Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC011416.1-201ENST00000514947 1732 ntBASIC6.11□□□□□ -1.43
VPS39Q96JC1 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
VPS39Q96JC1 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC6.1□□□□□ -1.43
VPS39Q96JC1 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
VPS39Q96JC1 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
VPS39Q96JC1 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
VPS39Q96JC1 CFAP70-202ENST00000340329 1403 ntTSL 5 BASIC6.1□□□□□ -1.43
VPS39Q96JC1 LIPF-201ENST00000238983 1376 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
VPS39Q96JC1 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC6.1□□□□□ -1.43
VPS39Q96JC1 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC6.1□□□□□ -1.43
VPS39Q96JC1 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
VPS39Q96JC1 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
VPS39Q96JC1 RPL11P4-201ENST00000332269 436 ntBASIC6.1□□□□□ -1.43
VPS39Q96JC1 ZNF66-202ENST00000360204 1120 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
VPS39Q96JC1 PRELID1P1-201ENST00000403549 660 ntBASIC6.1□□□□□ -1.43
VPS39Q96JC1 MRPL35-203ENST00000409180 651 ntAPPRIS ALT1 TSL 3 BASIC6.1□□□□□ -1.43
VPS39Q96JC1 PTCD2P2-201ENST00000415579 1095 ntBASIC6.1□□□□□ -1.43
VPS39Q96JC1 AC074035.1-201ENST00000420725 1184 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
VPS39Q96JC1 AL034379.1-201ENST00000423216 253 ntBASIC6.1□□□□□ -1.43
VPS39Q96JC1 AC092651.1-201ENST00000426110 312 ntBASIC6.1□□□□□ -1.43
VPS39Q96JC1 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC6.1□□□□□ -1.43
VPS39Q96JC1 AC094019.1-201ENST00000434678 472 ntBASIC6.1□□□□□ -1.43
VPS39Q96JC1 BBIP1-205ENST00000436562 383 ntAPPRIS P1 TSL 3 BASIC6.1□□□□□ -1.43
VPS39Q96JC1 AL356121.1-201ENST00000442911 156 ntBASIC6.1□□□□□ -1.43
VPS39Q96JC1 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
VPS39Q96JC1 HIGD1AP16-201ENST00000450986 258 ntBASIC6.1□□□□□ -1.43
VPS39Q96JC1 AL136982.3-201ENST00000454709 688 ntTSL 3 BASIC6.1□□□□□ -1.43
VPS39Q96JC1 PFN2-209ENST00000481275 560 ntTSL 4 BASIC6.1□□□□□ -1.43
VPS39Q96JC1 RN7SL104P-201ENST00000498686 293 ntBASIC6.1□□□□□ -1.43
VPS39Q96JC1 H2AFV-208ENST00000521529 439 ntTSL 5 BASIC6.1□□□□□ -1.43
VPS39Q96JC1 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC6.1□□□□□ -1.43
VPS39Q96JC1 AC244502.2-201ENST00000543361 851 ntBASIC6.1□□□□□ -1.43
VPS39Q96JC1 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC6.1□□□□□ -1.43
VPS39Q96JC1 AL049779.3-201ENST00000557141 606 ntBASIC6.1□□□□□ -1.43
VPS39Q96JC1 AL133297.1-201ENST00000568149 404 ntTSL 2 BASIC6.1□□□□□ -1.43
VPS39Q96JC1 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC6.1□□□□□ -1.43
VPS39Q96JC1 AC091151.1-201ENST00000587369 726 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
VPS39Q96JC1 AC135983.2-201ENST00000604301 628 ntTSL 5 BASIC6.1□□□□□ -1.43
VPS39Q96JC1 AC007100.1-201ENST00000606382 478 ntTSL 5 BASIC6.1□□□□□ -1.43
VPS39Q96JC1 MIR6885-201ENST00000612241 66 ntBASIC6.1□□□□□ -1.43
VPS39Q96JC1 MVP-219ENST00000629059 120 ntTSL 5 BASIC6.1□□□□□ -1.43
VPS39Q96JC1 AL161457.2-202ENST00000629161 743 ntTSL 5 BASIC6.1□□□□□ -1.43
VPS39Q96JC1 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
VPS39Q96JC1 HELLS-205ENST00000394036 3131 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
VPS39Q96JC1 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC6.1□□□□□ -1.43
VPS39Q96JC1 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC6.1□□□□□ -1.43
VPS39Q96JC1 AL513548.1-201ENST00000562904 1724 ntBASIC6.1□□□□□ -1.43
VPS39Q96JC1 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC6.1□□□□□ -1.43
VPS39Q96JC1 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
VPS39Q96JC1 GTDC1-212ENST00000463875 1563 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
VPS39Q96JC1 AC004656.1-201ENST00000568479 4951 ntBASIC6.09□□□□□ -1.43
VPS39Q96JC1 CBLB-205ENST00000407712 1493 ntTSL 2 BASIC6.09□□□□□ -1.43
VPS39Q96JC1 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC6.09□□□□□ -1.43
VPS39Q96JC1 ZNF610-202ENST00000327920 1855 ntAPPRIS P3 TSL 2 BASIC6.09□□□□□ -1.43
VPS39Q96JC1 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC6.09□□□□□ -1.43
VPS39Q96JC1 TCF12-214ENST00000559710 1314 ntTSL 2 BASIC6.09□□□□□ -1.43
VPS39Q96JC1 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC6.09□□□□□ -1.43
VPS39Q96JC1 TRAV25-201ENST00000390454 403 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
VPS39Q96JC1 AL121977.1-201ENST00000401636 979 ntBASIC6.09□□□□□ -1.43
VPS39Q96JC1 MTND2P12-201ENST00000417560 1252 ntBASIC6.09□□□□□ -1.43
VPS39Q96JC1 AC244033.1-201ENST00000426826 870 ntBASIC6.09□□□□□ -1.43
VPS39Q96JC1 OR3D1P-201ENST00000438288 955 ntBASIC6.09□□□□□ -1.43
VPS39Q96JC1 AL138921.1-201ENST00000444359 846 ntTSL 5 BASIC6.09□□□□□ -1.43
VPS39Q96JC1 AL512593.1-201ENST00000444758 779 ntBASIC6.09□□□□□ -1.43
VPS39Q96JC1 RPS18P1-201ENST00000447840 458 ntBASIC6.09□□□□□ -1.43
VPS39Q96JC1 AL162739.1-201ENST00000450606 307 ntBASIC6.09□□□□□ -1.43
VPS39Q96JC1 CEACAMP11-201ENST00000455211 583 ntBASIC6.09□□□□□ -1.43
VPS39Q96JC1 LINC01596-201ENST00000503609 592 ntTSL 2 BASIC6.09□□□□□ -1.43
VPS39Q96JC1 LINC01091-201ENST00000508111 645 ntTSL 5 BASIC6.09□□□□□ -1.43
VPS39Q96JC1 AC090958.1-201ENST00000511122 351 ntBASIC6.09□□□□□ -1.43
VPS39Q96JC1 TPT1-AS1-209ENST00000520585 818 ntTSL 5 BASIC6.09□□□□□ -1.43
VPS39Q96JC1 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
VPS39Q96JC1 AC092376.1-201ENST00000569677 335 ntTSL 2 BASIC6.09□□□□□ -1.43
VPS39Q96JC1 LINC01320-205ENST00000604250 857 ntTSL 5 BASIC6.09□□□□□ -1.43
VPS39Q96JC1 AL161457.2-204ENST00000609241 869 ntTSL 5 BASIC6.09□□□□□ -1.43
VPS39Q96JC1 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC6.09□□□□□ -1.43
VPS39Q96JC1 GAPDHP41-201ENST00000613707 975 ntBASIC6.09□□□□□ -1.43
VPS39Q96JC1 AP000432.2-201ENST00000624164 2048 ntBASIC6.09□□□□□ -1.43
VPS39Q96JC1 AC016583.1-201ENST00000624221 2431 ntBASIC6.09□□□□□ -1.43
VPS39Q96JC1 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
VPS39Q96JC1 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC6.09□□□□□ -1.43
VPS39Q96JC1 SLC17A4-202ENST00000397076 2331 ntTSL 2 BASIC6.09□□□□□ -1.43
VPS39Q96JC1 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC6.09□□□□□ -1.44
VPS39Q96JC1 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC6.08□□□□□ -1.44
VPS39Q96JC1 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
VPS39Q96JC1 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
VPS39Q96JC1 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
VPS39Q96JC1 TAF12-202ENST00000373824 1334 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
VPS39Q96JC1 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC6.08□□□□□ -1.44
VPS39Q96JC1 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC6.08□□□□□ -1.44
VPS39Q96JC1 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
VPS39Q96JC1 CD84-201ENST00000311224 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
VPS39Q96JC1 RNA5SP77-201ENST00000365394 120 ntBASIC6.08□□□□□ -1.44
VPS39Q96JC1 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC6.08□□□□□ -1.44
VPS39Q96JC1 CAV1-203ENST00000393468 845 ntAPPRIS ALT1 TSL 1 (best) BASIC6.08□□□□□ -1.44
VPS39Q96JC1 SNORA77.2-201ENST00000408571 112 ntBASIC6.08□□□□□ -1.44
VPS39Q96JC1 AL807757.2-201ENST00000416455 779 ntTSL 3 BASIC6.08□□□□□ -1.44
VPS39Q96JC1 AC010740.1-201ENST00000417035 684 ntBASIC6.08□□□□□ -1.44
VPS39Q96JC1 RPS7P8-201ENST00000418311 581 ntBASIC6.08□□□□□ -1.44
VPS39Q96JC1 AC234781.4-201ENST00000419384 244 ntBASIC6.08□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 94.8 ms