Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 TMEM202-201ENST00000341689 1012 ntAPPRIS P2 TSL 5 BASIC5.44□□□□□ -1.54
SKA3Q8IX90 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC5.44□□□□□ -1.54
SKA3Q8IX90 RN7SKP144-201ENST00000411108 279 ntBASIC5.44□□□□□ -1.54
SKA3Q8IX90 RN7SKP17-201ENST00000411242 351 ntBASIC5.44□□□□□ -1.54
SKA3Q8IX90 AL359885.1-201ENST00000415786 903 ntBASIC5.44□□□□□ -1.54
SKA3Q8IX90 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC5.44□□□□□ -1.54
SKA3Q8IX90 DPPA2P2-201ENST00000418220 897 ntBASIC5.44□□□□□ -1.54
SKA3Q8IX90 AC007562.1-201ENST00000421819 517 ntBASIC5.44□□□□□ -1.54
SKA3Q8IX90 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
SKA3Q8IX90 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SKA3Q8IX90 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC5.44□□□□□ -1.54
SKA3Q8IX90 GAPDHP23-201ENST00000444823 993 ntBASIC5.44□□□□□ -1.54
SKA3Q8IX90 AC023274.2-201ENST00000445264 521 ntBASIC5.44□□□□□ -1.54
SKA3Q8IX90 KRTAP2-5P-201ENST00000446109 396 ntBASIC5.44□□□□□ -1.54
SKA3Q8IX90 AL022319.1-201ENST00000458183 1167 ntBASIC5.44□□□□□ -1.54
SKA3Q8IX90 OR7E22P-201ENST00000478335 1035 ntBASIC5.44□□□□□ -1.54
SKA3Q8IX90 RPL12P30-201ENST00000488389 499 ntBASIC5.44□□□□□ -1.54
SKA3Q8IX90 AC113367.2-201ENST00000505749 160 ntBASIC5.44□□□□□ -1.54
SKA3Q8IX90 AC112484.3-201ENST00000505910 329 ntBASIC5.44□□□□□ -1.54
SKA3Q8IX90 LINC01091-201ENST00000508111 645 ntTSL 5 BASIC5.44□□□□□ -1.54
SKA3Q8IX90 ZFPM2-AS1-201ENST00000509144 542 ntTSL 3 BASIC5.44□□□□□ -1.54
SKA3Q8IX90 MGC32805-204ENST00000509993 783 ntTSL 2 BASIC5.44□□□□□ -1.54
SKA3Q8IX90 AC013724.1-201ENST00000511962 783 ntTSL 2 BASIC5.44□□□□□ -1.54
SKA3Q8IX90 HMGN1P17-201ENST00000513734 295 ntBASIC5.44□□□□□ -1.54
SKA3Q8IX90 RNA5SP441-201ENST00000516809 88 ntBASIC5.44□□□□□ -1.54
SKA3Q8IX90 NATP-201ENST00000523491 878 ntBASIC5.44□□□□□ -1.54
SKA3Q8IX90 LRTOMT-218ENST00000541614 726 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
SKA3Q8IX90 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC5.44□□□□□ -1.54
SKA3Q8IX90 AC137800.1-201ENST00000562976 573 ntTSL 4 BASIC5.44□□□□□ -1.54
SKA3Q8IX90 AL078601.3-201ENST00000573303 535 ntBASIC5.44□□□□□ -1.54
SKA3Q8IX90 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC5.44□□□□□ -1.54
SKA3Q8IX90 ZNF682-208ENST00000596019 552 ntTSL 5 BASIC5.44□□□□□ -1.54
SKA3Q8IX90 AL132655.1-201ENST00000601795 1153 ntTSL 3 BASIC5.44□□□□□ -1.54
SKA3Q8IX90 AP000654.1-201ENST00000602510 1192 ntTSL 5 BASIC5.44□□□□□ -1.54
SKA3Q8IX90 MIR6889-201ENST00000613185 59 ntBASIC5.44□□□□□ -1.54
SKA3Q8IX90 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC5.44□□□□□ -1.54
SKA3Q8IX90 OR7A1P-202ENST00000641542 1158 ntBASIC5.44□□□□□ -1.54
SKA3Q8IX90 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
SKA3Q8IX90 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC5.44□□□□□ -1.54
SKA3Q8IX90 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC5.44□□□□□ -1.54
SKA3Q8IX90 AL353763.1-201ENST00000624467 1628 ntBASIC5.44□□□□□ -1.54
SKA3Q8IX90 VEZT-204ENST00000436874 4562 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SKA3Q8IX90 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC5.44□□□□□ -1.54
SKA3Q8IX90 EIF3EP1-201ENST00000433978 1316 ntBASIC5.44□□□□□ -1.54
SKA3Q8IX90 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SKA3Q8IX90 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
SKA3Q8IX90 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
SKA3Q8IX90 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC5.43□□□□□ -1.54
SKA3Q8IX90 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
SKA3Q8IX90 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
SKA3Q8IX90 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
SKA3Q8IX90 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
SKA3Q8IX90 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
SKA3Q8IX90 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SKA3Q8IX90 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC5.43□□□□□ -1.54
SKA3Q8IX90 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SKA3Q8IX90 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC5.43□□□□□ -1.54
SKA3Q8IX90 OR4N2-201ENST00000315947 924 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
SKA3Q8IX90 RN7SKP171-201ENST00000364417 303 ntBASIC5.43□□□□□ -1.54
SKA3Q8IX90 YWHAZP6-201ENST00000399764 738 ntBASIC5.43□□□□□ -1.54
SKA3Q8IX90 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC5.43□□□□□ -1.54
SKA3Q8IX90 AC107079.1-201ENST00000416509 669 ntTSL 2 BASIC5.43□□□□□ -1.54
SKA3Q8IX90 AL354766.1-201ENST00000423396 542 ntBASIC5.43□□□□□ -1.54
SKA3Q8IX90 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC5.43□□□□□ -1.54
SKA3Q8IX90 GAPDHP59-201ENST00000435908 267 ntBASIC5.43□□□□□ -1.54
SKA3Q8IX90 AL390879.1-201ENST00000439143 386 ntBASIC5.43□□□□□ -1.54
SKA3Q8IX90 AL590004.3-202ENST00000445883 451 ntBASIC5.43□□□□□ -1.54
SKA3Q8IX90 AP002856.1-201ENST00000447864 562 ntTSL 4 BASIC5.43□□□□□ -1.54
SKA3Q8IX90 EIF4E2P2-201ENST00000492033 736 ntBASIC5.43□□□□□ -1.54
SKA3Q8IX90 RN7SL362P-201ENST00000494228 267 ntBASIC5.43□□□□□ -1.54
SKA3Q8IX90 LINC02217-201ENST00000505844 687 ntTSL 2 BASIC5.43□□□□□ -1.54
SKA3Q8IX90 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC5.43□□□□□ -1.54
SKA3Q8IX90 LACTB2-AS1-203ENST00000518553 817 ntTSL 5 BASIC5.43□□□□□ -1.54
SKA3Q8IX90 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC5.43□□□□□ -1.54
SKA3Q8IX90 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC5.43□□□□□ -1.54
SKA3Q8IX90 AL132989.1-201ENST00000557322 576 ntTSL 3 BASIC5.43□□□□□ -1.54
SKA3Q8IX90 LINC01477-201ENST00000566101 1226 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
SKA3Q8IX90 AC022872.1-201ENST00000568391 781 ntTSL 2 BASIC5.43□□□□□ -1.54
SKA3Q8IX90 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC5.43□□□□□ -1.54
SKA3Q8IX90 AC004232.2-201ENST00000574245 821 ntBASIC5.43□□□□□ -1.54
SKA3Q8IX90 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC5.43□□□□□ -1.54
SKA3Q8IX90 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC5.43□□□□□ -1.54
SKA3Q8IX90 AL161457.2-204ENST00000609241 869 ntTSL 5 BASIC5.43□□□□□ -1.54
SKA3Q8IX90 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC5.43□□□□□ -1.54
SKA3Q8IX90 MIR6721-201ENST00000617181 87 ntBASIC5.43□□□□□ -1.54
SKA3Q8IX90 OXSM-209ENST00000626005 309 ntTSL 3 BASIC5.43□□□□□ -1.54
SKA3Q8IX90 TEX41-271ENST00000628213 993 ntTSL 5 BASIC5.43□□□□□ -1.54
SKA3Q8IX90 TEX41-293ENST00000630451 690 ntTSL 5 BASIC5.43□□□□□ -1.54
SKA3Q8IX90 AC003992.1-201ENST00000635364 557 ntBASIC5.43□□□□□ -1.54
SKA3Q8IX90 AC000095.2-202ENST00000637415 154 ntBASIC5.43□□□□□ -1.54
SKA3Q8IX90 ZNF192P1-201ENST00000440790 1628 ntTSL 5 BASIC5.43□□□□□ -1.54
SKA3Q8IX90 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC5.43□□□□□ -1.54
SKA3Q8IX90 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC5.43□□□□□ -1.54
SKA3Q8IX90 KANTR-203ENST00000604062 4251 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
SKA3Q8IX90 SLAMF6-203ENST00000368059 2743 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
SKA3Q8IX90 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC5.43□□□□□ -1.54
SKA3Q8IX90 SHQ1P1-201ENST00000437111 1544 ntBASIC5.43□□□□□ -1.54
SKA3Q8IX90 AC018717.1-201ENST00000457712 1505 ntBASIC5.43□□□□□ -1.54
SKA3Q8IX90 AC090181.3-201ENST00000624777 1514 ntBASIC5.43□□□□□ -1.54
SKA3Q8IX90 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC5.42□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms