Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
FOXA1P55317 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
FOXA1P55317 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
FOXA1P55317 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
FOXA1P55317 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
FOXA1P55317 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC5.69□□□□□ -1.5
FOXA1P55317 OFD1P17-201ENST00000437639 3018 ntBASIC5.69□□□□□ -1.5
FOXA1P55317 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
FOXA1P55317 C5orf63-201ENST00000296662 966 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
FOXA1P55317 S100A5-201ENST00000368717 506 ntAPPRIS P1 TSL 3 BASIC5.69□□□□□ -1.5
FOXA1P55317 MIR551B-201ENST00000384984 96 ntBASIC5.69□□□□□ -1.5
FOXA1P55317 YWHAZP6-201ENST00000399764 738 ntBASIC5.69□□□□□ -1.5
FOXA1P55317 AL096711.1-201ENST00000404780 554 ntBASIC5.69□□□□□ -1.5
FOXA1P55317 METTL15P3-201ENST00000415522 1221 ntBASIC5.69□□□□□ -1.5
FOXA1P55317 RPS4XP5-201ENST00000419038 768 ntBASIC5.69□□□□□ -1.5
FOXA1P55317 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC5.69□□□□□ -1.5
FOXA1P55317 CRIP1P1-201ENST00000427567 185 ntBASIC5.69□□□□□ -1.5
FOXA1P55317 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC5.69□□□□□ -1.5
FOXA1P55317 RPSAP65-201ENST00000429660 595 ntBASIC5.69□□□□□ -1.5
FOXA1P55317 AC242426.1-201ENST00000435270 960 ntBASIC5.69□□□□□ -1.5
FOXA1P55317 AC096775.1-201ENST00000437724 448 ntBASIC5.69□□□□□ -1.5
FOXA1P55317 AL353662.1-201ENST00000439099 327 ntBASIC5.69□□□□□ -1.5
FOXA1P55317 AL445466.1-201ENST00000448432 357 ntBASIC5.69□□□□□ -1.5
FOXA1P55317 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC5.69□□□□□ -1.5
FOXA1P55317 AL358612.1-201ENST00000452911 481 ntTSL 3 BASIC5.69□□□□□ -1.5
FOXA1P55317 AL157777.1-201ENST00000468100 304 ntBASIC5.69□□□□□ -1.5
FOXA1P55317 AC005017.1-201ENST00000482002 490 ntBASIC5.69□□□□□ -1.5
FOXA1P55317 RPL29P23-201ENST00000486188 442 ntBASIC5.69□□□□□ -1.5
FOXA1P55317 PDCL3P4-201ENST00000489621 720 ntBASIC5.69□□□□□ -1.5
FOXA1P55317 AP002453.1-201ENST00000492327 668 ntBASIC5.69□□□□□ -1.5
FOXA1P55317 AC096576.2-201ENST00000511835 948 ntTSL 3 BASIC5.69□□□□□ -1.5
FOXA1P55317 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC5.69□□□□□ -1.5
FOXA1P55317 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC5.69□□□□□ -1.5
FOXA1P55317 AL132989.1-201ENST00000557322 576 ntTSL 3 BASIC5.69□□□□□ -1.5
FOXA1P55317 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC5.69□□□□□ -1.5
FOXA1P55317 CNEP1R1-204ENST00000562576 656 ntTSL 5 BASIC5.69□□□□□ -1.5
FOXA1P55317 AL513327.3-201ENST00000602618 469 ntBASIC5.69□□□□□ -1.5
FOXA1P55317 C5orf63-208ENST00000607731 478 ntTSL 5 BASIC5.69□□□□□ -1.5
FOXA1P55317 OSTC-205ENST00000613215 876 ntTSL 2 BASIC5.69□□□□□ -1.5
FOXA1P55317 uc_338.29-201ENST00000615099 168 ntBASIC5.69□□□□□ -1.5
FOXA1P55317 Metazoa_SRP.81-201ENST00000618466 316 ntBASIC5.69□□□□□ -1.5
FOXA1P55317 AL445670.1-201ENST00000618889 801 ntBASIC5.69□□□□□ -1.5
FOXA1P55317 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC5.69□□□□□ -1.5
FOXA1P55317 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
FOXA1P55317 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
FOXA1P55317 C2CD6-201ENST00000286195 2104 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
FOXA1P55317 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
FOXA1P55317 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC5.69□□□□□ -1.5
FOXA1P55317 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC5.69□□□□□ -1.5
FOXA1P55317 GNL2P1-201ENST00000451274 2190 ntBASIC5.69□□□□□ -1.5
FOXA1P55317 AC140134.1-201ENST00000511830 3544 ntBASIC5.69□□□□□ -1.5
FOXA1P55317 WDR95P-201ENST00000425638 1542 ntBASIC5.69□□□□□ -1.5
FOXA1P55317 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
FOXA1P55317 MS4A7-211ENST00000534016 1378 ntTSL 2 BASIC5.68□□□□□ -1.5
FOXA1P55317 AC008627.1-201ENST00000517511 1704 ntBASIC5.68□□□□□ -1.5
FOXA1P55317 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
FOXA1P55317 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
FOXA1P55317 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
FOXA1P55317 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
FOXA1P55317 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
FOXA1P55317 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
FOXA1P55317 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
FOXA1P55317 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
FOXA1P55317 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
FOXA1P55317 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC5.68□□□□□ -1.5
FOXA1P55317 TRAV1-2-201ENST00000390423 402 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
FOXA1P55317 RNA5SP91-201ENST00000390902 119 ntBASIC5.68□□□□□ -1.5
FOXA1P55317 SNX24-202ENST00000395451 1050 ntTSL 3 BASIC5.68□□□□□ -1.5
FOXA1P55317 C2orf88-202ENST00000396974 998 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
FOXA1P55317 AL049712.1-201ENST00000418739 872 ntTSL 3 BASIC5.68□□□□□ -1.5
FOXA1P55317 LINC02246-202ENST00000418954 717 ntTSL 2 BASIC5.68□□□□□ -1.5
FOXA1P55317 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC5.68□□□□□ -1.5
FOXA1P55317 AC108479.1-201ENST00000431142 427 ntBASIC5.68□□□□□ -1.5
FOXA1P55317 AL353751.1-203ENST00000437032 603 ntTSL 3 BASIC5.68□□□□□ -1.5
FOXA1P55317 AL583839.2-201ENST00000443716 641 ntTSL 3 BASIC5.68□□□□□ -1.5
FOXA1P55317 TRIM60P16-201ENST00000444048 694 ntBASIC5.68□□□□□ -1.5
FOXA1P55317 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC5.68□□□□□ -1.5
FOXA1P55317 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC5.68□□□□□ -1.5
FOXA1P55317 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC5.68□□□□□ -1.5
FOXA1P55317 AP000842.2-202ENST00000526211 569 ntTSL 4 BASIC5.68□□□□□ -1.5
FOXA1P55317 NAV2-IT1-201ENST00000528204 506 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
FOXA1P55317 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC5.68□□□□□ -1.5
FOXA1P55317 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC5.68□□□□□ -1.5
FOXA1P55317 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC5.68□□□□□ -1.5
FOXA1P55317 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC5.68□□□□□ -1.5
FOXA1P55317 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
FOXA1P55317 TEX41-218ENST00000596540 882 ntTSL 5 BASIC5.68□□□□□ -1.5
FOXA1P55317 AC009237.12-201ENST00000604755 742 ntBASIC5.68□□□□□ -1.5
FOXA1P55317 AC015574.1-202ENST00000616588 456 ntTSL 5 BASIC5.68□□□□□ -1.5
FOXA1P55317 AL357140.4-201ENST00000636827 412 ntBASIC5.68□□□□□ -1.5
FOXA1P55317 OR11H2-202ENST00000641517 1085 ntBASIC5.68□□□□□ -1.5
FOXA1P55317 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC5.68□□□□□ -1.5
FOXA1P55317 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
FOXA1P55317 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
FOXA1P55317 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
FOXA1P55317 RASSF8-216ENST00000615708 1328 ntTSL 5 BASIC5.68□□□□□ -1.5
FOXA1P55317 ESF1-201ENST00000202816 3216 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
FOXA1P55317 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
FOXA1P55317 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
FOXA1P55317 PYROXD1-205ENST00000538582 3639 ntTSL 2 BASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 89.6 ms