Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AC097537.1-201ENST00000514864 1213 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
HOXC4P09017 TPM3P3-201ENST00000521343 354 ntBASIC5.93□□□□□ -1.46
HOXC4P09017 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC5.93□□□□□ -1.46
HOXC4P09017 PCNAP4-201ENST00000532690 730 ntBASIC5.93□□□□□ -1.46
HOXC4P09017 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC5.93□□□□□ -1.46
HOXC4P09017 AC079950.1-201ENST00000551229 568 ntTSL 4 BASIC5.93□□□□□ -1.46
HOXC4P09017 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC5.93□□□□□ -1.46
HOXC4P09017 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC5.93□□□□□ -1.46
HOXC4P09017 AC027243.2-201ENST00000602530 724 ntBASIC5.93□□□□□ -1.46
HOXC4P09017 AC009120.7-201ENST00000623452 780 ntBASIC5.93□□□□□ -1.46
HOXC4P09017 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC5.93□□□□□ -1.46
HOXC4P09017 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
HOXC4P09017 AL662795.2-201ENST00000624252 3706 ntBASIC5.93□□□□□ -1.46
HOXC4P09017 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
HOXC4P09017 AC134980.1-209ENST00000639059 2317 ntTSL 2 BASIC5.93□□□□□ -1.46
HOXC4P09017 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
HOXC4P09017 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
HOXC4P09017 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
HOXC4P09017 CLEC4E-201ENST00000299663 2159 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
HOXC4P09017 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
HOXC4P09017 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC5.93□□□□□ -1.46
HOXC4P09017 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC5.93□□□□□ -1.46
HOXC4P09017 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
HOXC4P09017 AL353763.1-201ENST00000624467 1628 ntBASIC5.92□□□□□ -1.46
HOXC4P09017 CACNA1E-209ENST00000621551 14886 ntAPPRIS ALT2 TSL 5 BASIC5.92□□□□□ -1.46
HOXC4P09017 FGF1-213ENST00000610990 3802 ntAPPRIS P1 TSL 4 BASIC5.92□□□□□ -1.46
HOXC4P09017 CYLD-203ENST00000427738 8503 ntTSL 5 BASIC5.92□□□□□ -1.46
HOXC4P09017 LY86-AS1-202ENST00000435641 2819 ntTSL 2 BASIC5.92□□□□□ -1.46
HOXC4P09017 POT1-202ENST00000393329 3950 ntTSL 5 BASIC5.92□□□□□ -1.46
HOXC4P09017 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
HOXC4P09017 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC5.92□□□□□ -1.46
HOXC4P09017 CLEC2D-201ENST00000261339 465 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
HOXC4P09017 OR56A3-201ENST00000329564 948 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
HOXC4P09017 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
HOXC4P09017 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
HOXC4P09017 CLEC4A-204ENST00000360500 597 ntTSL 5 BASIC5.92□□□□□ -1.46
HOXC4P09017 RNA5SP435-201ENST00000364044 108 ntBASIC5.92□□□□□ -1.46
HOXC4P09017 OR2J1-201ENST00000377171 1273 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
HOXC4P09017 IGLV3-10-201ENST00000390315 382 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
HOXC4P09017 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC5.92□□□□□ -1.46
HOXC4P09017 LIX1L-AS1-202ENST00000412239 570 ntTSL 2 BASIC5.92□□□□□ -1.46
HOXC4P09017 MYL6P5-201ENST00000412707 459 ntBASIC5.92□□□□□ -1.46
HOXC4P09017 CDY17P-201ENST00000414121 1282 ntBASIC5.92□□□□□ -1.46
HOXC4P09017 RPL23AP18-201ENST00000416139 468 ntBASIC5.92□□□□□ -1.46
HOXC4P09017 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC5.92□□□□□ -1.46
HOXC4P09017 RPS3P2-201ENST00000421346 701 ntBASIC5.92□□□□□ -1.46
HOXC4P09017 NMD3P2-201ENST00000421815 761 ntBASIC5.92□□□□□ -1.46
HOXC4P09017 IPPKP1-201ENST00000422501 768 ntBASIC5.92□□□□□ -1.46
HOXC4P09017 AK3P5-201ENST00000432033 519 ntBASIC5.92□□□□□ -1.46
HOXC4P09017 MIS18A-AS1-201ENST00000453549 769 ntTSL 5 BASIC5.92□□□□□ -1.46
HOXC4P09017 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC5.92□□□□□ -1.46
HOXC4P09017 AC008705.1-201ENST00000518837 489 ntTSL 3 BASIC5.92□□□□□ -1.46
HOXC4P09017 CETN3-206ENST00000522864 738 ntTSL 3 BASIC5.92□□□□□ -1.46
HOXC4P09017 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC5.92□□□□□ -1.46
HOXC4P09017 OR4A42P-201ENST00000531397 938 ntBASIC5.92□□□□□ -1.46
HOXC4P09017 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC5.92□□□□□ -1.46
HOXC4P09017 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC5.92□□□□□ -1.46
HOXC4P09017 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC5.92□□□□□ -1.46
HOXC4P09017 LINC01320-205ENST00000604250 857 ntTSL 5 BASIC5.92□□□□□ -1.46
HOXC4P09017 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC5.92□□□□□ -1.46
HOXC4P09017 LINC00284-211ENST00000620454 534 ntTSL 4 BASIC5.92□□□□□ -1.46
HOXC4P09017 5S_rRNA.28-201ENST00000638107 119 ntBASIC5.92□□□□□ -1.46
HOXC4P09017 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
HOXC4P09017 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
HOXC4P09017 AC009831.5-201ENST00000624000 3189 ntBASIC5.92□□□□□ -1.46
HOXC4P09017 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC5.92□□□□□ -1.46
HOXC4P09017 A1CF-206ENST00000395489 9517 ntTSL 2 BASIC5.92□□□□□ -1.46
HOXC4P09017 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
HOXC4P09017 LGALS17A-201ENST00000412609 2562 ntTSL 2 BASIC5.92□□□□□ -1.46
HOXC4P09017 NDUFS1-205ENST00000449699 2371 ntAPPRIS P1 TSL 2 BASIC5.92□□□□□ -1.46
HOXC4P09017 MAT2B-201ENST00000280969 2226 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
HOXC4P09017 PAPD4-203ENST00000428308 2204 ntAPPRIS P3 TSL 2 BASIC5.91□□□□□ -1.46
HOXC4P09017 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC5.91□□□□□ -1.46
HOXC4P09017 CCDC26-201ENST00000446592 1721 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
HOXC4P09017 VEGFD-201ENST00000297904 2037 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
HOXC4P09017 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
HOXC4P09017 USP9YP3-201ENST00000434481 1766 ntBASIC5.91□□□□□ -1.46
HOXC4P09017 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
HOXC4P09017 NAT1-210ENST00000545197 1827 ntTSL 5 BASIC5.91□□□□□ -1.46
HOXC4P09017 OR10R3P-201ENST00000361688 942 ntBASIC5.91□□□□□ -1.46
HOXC4P09017 OR2W1-201ENST00000377175 1028 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
HOXC4P09017 RNU6-316P-201ENST00000391027 107 ntBASIC5.91□□□□□ -1.46
HOXC4P09017 OR7E101P-201ENST00000400428 513 ntBASIC5.91□□□□□ -1.46
HOXC4P09017 RPS3AP2-201ENST00000407190 754 ntBASIC5.91□□□□□ -1.46
HOXC4P09017 TMA16P2-201ENST00000413187 601 ntBASIC5.91□□□□□ -1.46
HOXC4P09017 GSTM2-205ENST00000414179 982 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
HOXC4P09017 OSBPL10-AS1-202ENST00000418728 458 ntTSL 5 BASIC5.91□□□□□ -1.46
HOXC4P09017 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC5.91□□□□□ -1.46
HOXC4P09017 KATNBL1P2-201ENST00000433311 835 ntBASIC5.91□□□□□ -1.46
HOXC4P09017 AL445928.1-201ENST00000435545 222 ntBASIC5.91□□□□□ -1.46
HOXC4P09017 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC5.91□□□□□ -1.46
HOXC4P09017 AC073109.1-201ENST00000445066 978 ntBASIC5.91□□□□□ -1.46
HOXC4P09017 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC5.91□□□□□ -1.46
HOXC4P09017 AP006222.1-205ENST00000450734 457 ntBASIC5.91□□□□□ -1.46
HOXC4P09017 AC007998.1-201ENST00000474156 672 ntBASIC5.91□□□□□ -1.46
HOXC4P09017 CCDC11P1-201ENST00000503137 1162 ntBASIC5.91□□□□□ -1.46
HOXC4P09017 PSMA2P2-201ENST00000504319 686 ntBASIC5.91□□□□□ -1.46
HOXC4P09017 AC006499.4-201ENST00000510947 694 ntBASIC5.91□□□□□ -1.46
HOXC4P09017 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC5.91□□□□□ -1.46
HOXC4P09017 AC027808.1-201ENST00000560873 683 ntTSL 3 BASIC5.91□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 97.5 ms