Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AP005435.3-201ENST00000531260 3198 ntBASIC5.68□□□□□ -1.5
HOXD4P09016 ESRRG-212ENST00000463665 3359 ntTSL 2 BASIC5.68□□□□□ -1.5
HOXD4P09016 DDX18-201ENST00000263239 3796 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
HOXD4P09016 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
HOXD4P09016 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC5.68□□□□□ -1.5
HOXD4P09016 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
HOXD4P09016 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
HOXD4P09016 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC5.67□□□□□ -1.5
HOXD4P09016 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
HOXD4P09016 ZFY-202ENST00000383052 5113 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
HOXD4P09016 GALNT5-201ENST00000259056 6171 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
HOXD4P09016 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
HOXD4P09016 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
HOXD4P09016 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC5.67□□□□□ -1.5
HOXD4P09016 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC5.67□□□□□ -1.5
HOXD4P09016 AC116036.1-201ENST00000412199 367 ntBASIC5.67□□□□□ -1.5
HOXD4P09016 AC107079.1-201ENST00000416509 669 ntTSL 2 BASIC5.67□□□□□ -1.5
HOXD4P09016 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC5.67□□□□□ -1.5
HOXD4P09016 TEX50-201ENST00000417563 821 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
HOXD4P09016 DPPA2P2-201ENST00000418220 897 ntBASIC5.67□□□□□ -1.5
HOXD4P09016 AC009506.2-201ENST00000420635 840 ntBASIC5.67□□□□□ -1.5
HOXD4P09016 IPPKP1-201ENST00000422501 768 ntBASIC5.67□□□□□ -1.5
HOXD4P09016 SETP9-201ENST00000423837 832 ntBASIC5.67□□□□□ -1.5
HOXD4P09016 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC5.67□□□□□ -1.5
HOXD4P09016 AL606534.4-201ENST00000427176 792 ntTSL 5 BASIC5.67□□□□□ -1.5
HOXD4P09016 RPL5P2-201ENST00000429598 854 ntBASIC5.67□□□□□ -1.5
HOXD4P09016 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC5.67□□□□□ -1.5
HOXD4P09016 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC5.67□□□□□ -1.5
HOXD4P09016 AL355355.1-201ENST00000442900 793 ntBASIC5.67□□□□□ -1.5
HOXD4P09016 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC5.67□□□□□ -1.5
HOXD4P09016 MORF4-201ENST00000447135 971 ntBASIC5.67□□□□□ -1.5
HOXD4P09016 VN1R38P-201ENST00000450265 887 ntBASIC5.67□□□□□ -1.5
HOXD4P09016 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC5.67□□□□□ -1.5
HOXD4P09016 AC012123.2-201ENST00000485809 248 ntBASIC5.67□□□□□ -1.5
HOXD4P09016 AC027369.2-201ENST00000528030 440 ntBASIC5.67□□□□□ -1.5
HOXD4P09016 AC108136.1-201ENST00000530350 631 ntTSL 5 BASIC5.67□□□□□ -1.5
HOXD4P09016 PTER-205ENST00000535784 1203 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
HOXD4P09016 UBE2N-204ENST00000549833 960 ntTSL 3 BASIC5.67□□□□□ -1.5
HOXD4P09016 CYCSP38-201ENST00000559840 322 ntBASIC5.67□□□□□ -1.5
HOXD4P09016 ADAMTS7P4-205ENST00000560651 453 ntTSL 3 BASIC5.67□□□□□ -1.5
HOXD4P09016 AC008507.3-201ENST00000585753 472 ntBASIC5.67□□□□□ -1.5
HOXD4P09016 AC005332.4-201ENST00000592752 579 ntBASIC5.67□□□□□ -1.5
HOXD4P09016 AC012313.4-201ENST00000596296 495 ntTSL 3 BASIC5.67□□□□□ -1.5
HOXD4P09016 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC5.67□□□□□ -1.5
HOXD4P09016 AP001823.1-201ENST00000604056 1003 ntBASIC5.67□□□□□ -1.5
HOXD4P09016 AL138900.3-201ENST00000607010 629 ntTSL 2 BASIC5.67□□□□□ -1.5
HOXD4P09016 PPP3CB-AS1-213ENST00000620302 501 ntTSL 5 BASIC5.67□□□□□ -1.5
HOXD4P09016 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
HOXD4P09016 AC016745.2-201ENST00000608834 3443 ntBASIC5.67□□□□□ -1.5
HOXD4P09016 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC5.67□□□□□ -1.5
HOXD4P09016 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC5.67□□□□□ -1.5
HOXD4P09016 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.67□□□□□ -1.5
HOXD4P09016 CLEC2B-201ENST00000228438 1700 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
HOXD4P09016 AC125336.1-201ENST00000508893 2827 ntBASIC5.67□□□□□ -1.5
HOXD4P09016 AC010266.2-201ENST00000564741 3255 ntBASIC5.67□□□□□ -1.5
HOXD4P09016 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
HOXD4P09016 LINC01440-201ENST00000416190 1340 ntTSL 5 BASIC5.67□□□□□ -1.5
HOXD4P09016 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC5.67□□□□□ -1.5
HOXD4P09016 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC5.67□□□□□ -1.5
HOXD4P09016 PPFIA2-203ENST00000443686 3782 ntTSL 2 BASIC5.67□□□□□ -1.5
HOXD4P09016 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
HOXD4P09016 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC5.67□□□□□ -1.5
HOXD4P09016 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
HOXD4P09016 VNN3-203ENST00000392393 1603 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
HOXD4P09016 PLEKHA1-205ENST00000433307 3704 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
HOXD4P09016 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
HOXD4P09016 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
HOXD4P09016 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC5.66□□□□□ -1.5
HOXD4P09016 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC5.66□□□□□ -1.5
HOXD4P09016 RAP1GDS1-204ENST00000408900 1942 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
HOXD4P09016 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
HOXD4P09016 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
HOXD4P09016 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
HOXD4P09016 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
HOXD4P09016 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC5.66□□□□□ -1.5
HOXD4P09016 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC5.66□□□□□ -1.5
HOXD4P09016 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC5.66□□□□□ -1.5
HOXD4P09016 OR2M1P-201ENST00000318104 951 ntBASIC5.66□□□□□ -1.5
HOXD4P09016 HIST1H1T-201ENST00000338379 718 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
HOXD4P09016 MIR133A2-201ENST00000347538 102 ntBASIC5.66□□□□□ -1.5
HOXD4P09016 AL360271.1-201ENST00000395679 510 ntBASIC5.66□□□□□ -1.5
HOXD4P09016 AL109610.1-201ENST00000414598 431 ntTSL 3 BASIC5.66□□□□□ -1.5
HOXD4P09016 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC5.66□□□□□ -1.5
HOXD4P09016 AC130360.1-201ENST00000425489 1117 ntBASIC5.66□□□□□ -1.5
HOXD4P09016 AC007283.1-201ENST00000434645 445 ntTSL 5 BASIC5.66□□□□□ -1.5
HOXD4P09016 AC079612.2-201ENST00000446029 348 ntTSL 2 BASIC5.66□□□□□ -1.5
HOXD4P09016 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
HOXD4P09016 MAGI2-AS3-210ENST00000448636 798 ntTSL 5 BASIC5.66□□□□□ -1.5
HOXD4P09016 RN7SL214P-201ENST00000487317 265 ntBASIC5.66□□□□□ -1.5
HOXD4P09016 SNX18P24-201ENST00000505249 671 ntBASIC5.66□□□□□ -1.5
HOXD4P09016 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC5.66□□□□□ -1.5
HOXD4P09016 AC130365.2-201ENST00000525882 1201 ntBASIC5.66□□□□□ -1.5
HOXD4P09016 OR4A13P-201ENST00000529316 942 ntBASIC5.66□□□□□ -1.5
HOXD4P09016 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC5.66□□□□□ -1.5
HOXD4P09016 OR5AP2-201ENST00000544374 1006 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
HOXD4P09016 HMGN2P47-201ENST00000559378 272 ntBASIC5.66□□□□□ -1.5
HOXD4P09016 AC020978.2-201ENST00000563203 428 ntTSL 3 BASIC5.66□□□□□ -1.5
HOXD4P09016 AC008914.1-201ENST00000576302 797 ntTSL 3 BASIC5.66□□□□□ -1.5
HOXD4P09016 MIR3614-201ENST00000581261 86 ntBASIC5.66□□□□□ -1.5
HOXD4P09016 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 77 ms