Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 RNU11-6P-201ENST00000391127 133 ntBASIC5.47□□□□□ -1.53
LMX1BO60663 AL445238.1-204ENST00000400311 463 ntBASIC5.47□□□□□ -1.53
LMX1BO60663 GCNT1P4-201ENST00000404096 329 ntBASIC5.47□□□□□ -1.53
LMX1BO60663 RNA5SP198-201ENST00000410376 127 ntBASIC5.47□□□□□ -1.53
LMX1BO60663 AMYP1-201ENST00000440059 1023 ntBASIC5.47□□□□□ -1.53
LMX1BO60663 RPL5P7-201ENST00000444235 813 ntBASIC5.47□□□□□ -1.53
LMX1BO60663 PPIAP20-201ENST00000449839 135 ntBASIC5.47□□□□□ -1.53
LMX1BO60663 AP000547.1-201ENST00000454360 617 ntBASIC5.47□□□□□ -1.53
LMX1BO60663 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC5.47□□□□□ -1.53
LMX1BO60663 AC073594.1-201ENST00000462065 364 ntBASIC5.47□□□□□ -1.53
LMX1BO60663 UCK2-205ENST00000469256 753 ntTSL 3 BASIC5.47□□□□□ -1.53
LMX1BO60663 AC245088.1-201ENST00000486508 384 ntTSL 3 BASIC5.47□□□□□ -1.53
LMX1BO60663 CAB39P1-201ENST00000502277 460 ntBASIC5.47□□□□□ -1.53
LMX1BO60663 AC109439.2-201ENST00000502421 564 ntTSL 4 BASIC5.47□□□□□ -1.53
LMX1BO60663 AC018645.1-201ENST00000505003 109 ntBASIC5.47□□□□□ -1.53
LMX1BO60663 SNX18P25-201ENST00000510539 758 ntBASIC5.47□□□□□ -1.53
LMX1BO60663 AC108063.1-201ENST00000513586 414 ntTSL 3 BASIC5.47□□□□□ -1.53
LMX1BO60663 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC5.47□□□□□ -1.53
LMX1BO60663 AP001208.1-201ENST00000518612 408 ntTSL 3 BASIC5.47□□□□□ -1.53
LMX1BO60663 LINC01151-201ENST00000521608 571 ntTSL 4 BASIC5.47□□□□□ -1.53
LMX1BO60663 GLYATL1P2-201ENST00000529451 510 ntTSL 2 BASIC5.47□□□□□ -1.53
LMX1BO60663 AC012555.2-201ENST00000549448 413 ntTSL 3 BASIC5.47□□□□□ -1.53
LMX1BO60663 PWRN1-207ENST00000565893 818 ntTSL 3 BASIC5.47□□□□□ -1.53
LMX1BO60663 RAB27A-212ENST00000569493 1013 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
LMX1BO60663 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC5.47□□□□□ -1.53
LMX1BO60663 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC5.47□□□□□ -1.53
LMX1BO60663 AC138473.1-201ENST00000605717 526 ntBASIC5.47□□□□□ -1.53
LMX1BO60663 TULP3P1-203ENST00000606237 586 ntTSL 4 BASIC5.47□□□□□ -1.53
LMX1BO60663 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC5.47□□□□□ -1.53
LMX1BO60663 MIR6729-201ENST00000618194 65 ntBASIC5.47□□□□□ -1.53
LMX1BO60663 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC5.47□□□□□ -1.53
LMX1BO60663 AC244205.1-201ENST00000624935 705 ntTSL 2 BASIC5.47□□□□□ -1.53
LMX1BO60663 PCBP1-AS1-360ENST00000630377 598 ntTSL 5 BASIC5.47□□□□□ -1.53
LMX1BO60663 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
LMX1BO60663 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
LMX1BO60663 ZNF19-206ENST00000565100 2087 ntTSL 5 BASIC5.47□□□□□ -1.53
LMX1BO60663 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC5.47□□□□□ -1.53
LMX1BO60663 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
LMX1BO60663 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC5.47□□□□□ -1.53
LMX1BO60663 FASTKD1-204ENST00000453153 2967 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
LMX1BO60663 AC024341.1-201ENST00000526444 1552 ntBASIC5.46□□□□□ -1.53
LMX1BO60663 AC096921.2-201ENST00000561507 1916 ntBASIC5.46□□□□□ -1.53
LMX1BO60663 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC5.46□□□□□ -1.53
LMX1BO60663 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC5.46□□□□□ -1.53
LMX1BO60663 AC104966.1-201ENST00000467010 1464 ntBASIC5.46□□□□□ -1.53
LMX1BO60663 AL731532.1-201ENST00000623972 4236 ntBASIC5.46□□□□□ -1.54
LMX1BO60663 HDAC1P2-201ENST00000453661 1398 ntBASIC5.46□□□□□ -1.54
LMX1BO60663 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
LMX1BO60663 TTC39B-207ENST00000507993 1950 ntAPPRIS ALT2 TSL 2 BASIC5.46□□□□□ -1.54
LMX1BO60663 AC092692.1-201ENST00000623625 2595 ntBASIC5.46□□□□□ -1.54
LMX1BO60663 TEX11-202ENST00000374320 2224 ntTSL 2 BASIC5.46□□□□□ -1.54
LMX1BO60663 SATL1-202ENST00000509231 2224 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
LMX1BO60663 AKAP17BP-201ENST00000431706 2719 ntBASIC5.46□□□□□ -1.54
LMX1BO60663 OR4K5-201ENST00000315915 1078 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
LMX1BO60663 RPL11P4-201ENST00000332269 436 ntBASIC5.46□□□□□ -1.54
LMX1BO60663 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC5.46□□□□□ -1.54
LMX1BO60663 AC017035.1-201ENST00000411999 1115 ntBASIC5.46□□□□□ -1.54
LMX1BO60663 HSFY7P-201ENST00000432672 318 ntBASIC5.46□□□□□ -1.54
LMX1BO60663 HSFY8P-201ENST00000437934 318 ntBASIC5.46□□□□□ -1.54
LMX1BO60663 COX4I1P2-201ENST00000447446 547 ntBASIC5.46□□□□□ -1.54
LMX1BO60663 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC5.46□□□□□ -1.54
LMX1BO60663 HSFY5P-201ENST00000453726 309 ntBASIC5.46□□□□□ -1.54
LMX1BO60663 RARRES2P3-201ENST00000457739 473 ntBASIC5.46□□□□□ -1.54
LMX1BO60663 AK5-208ENST00000478255 556 ntTSL 2 BASIC5.46□□□□□ -1.54
LMX1BO60663 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC5.46□□□□□ -1.54
LMX1BO60663 AC010343.3-202ENST00000510327 619 ntTSL 3 BASIC5.46□□□□□ -1.54
LMX1BO60663 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC5.46□□□□□ -1.54
LMX1BO60663 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC5.46□□□□□ -1.54
LMX1BO60663 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC5.46□□□□□ -1.54
LMX1BO60663 IGLVIV-64-201ENST00000518581 301 ntBASIC5.46□□□□□ -1.54
LMX1BO60663 AC022915.3-201ENST00000518620 594 ntTSL 4 BASIC5.46□□□□□ -1.54
LMX1BO60663 AP001804.1-201ENST00000526868 919 ntBASIC5.46□□□□□ -1.54
LMX1BO60663 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC5.46□□□□□ -1.54
LMX1BO60663 A2MP1-201ENST00000543404 1201 ntTSL 5 BASIC5.46□□□□□ -1.54
LMX1BO60663 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC5.46□□□□□ -1.54
LMX1BO60663 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC5.46□□□□□ -1.54
LMX1BO60663 RGS6-215ENST00000554782 1110 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
LMX1BO60663 AC010325.1-202ENST00000562076 279 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.54
LMX1BO60663 AC009063.2-203ENST00000567860 745 ntTSL 2 BASIC5.46□□□□□ -1.54
LMX1BO60663 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC5.46□□□□□ -1.54
LMX1BO60663 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC5.46□□□□□ -1.54
LMX1BO60663 AC011458.1-201ENST00000604034 617 ntBASIC5.46□□□□□ -1.54
LMX1BO60663 KATNBL1P1-201ENST00000605192 748 ntBASIC5.46□□□□□ -1.54
LMX1BO60663 AC091167.5-201ENST00000605689 894 ntBASIC5.46□□□□□ -1.54
LMX1BO60663 PCGEM1-202ENST00000606314 759 ntTSL 5 BASIC5.46□□□□□ -1.54
LMX1BO60663 Metazoa_SRP.70-201ENST00000612622 273 ntBASIC5.46□□□□□ -1.54
LMX1BO60663 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC5.46□□□□□ -1.54
LMX1BO60663 BRCC3-209ENST00000620502 882 ntAPPRIS ALT2 TSL 5 BASIC5.46□□□□□ -1.54
LMX1BO60663 AP001043.1-201ENST00000626259 773 ntTSL 5 BASIC5.46□□□□□ -1.54
LMX1BO60663 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC5.46□□□□□ -1.54
LMX1BO60663 AF067845.4-201ENST00000633198 480 ntTSL 3 BASIC5.46□□□□□ -1.54
LMX1BO60663 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC5.46□□□□□ -1.54
LMX1BO60663 PLCB1-202ENST00000378637 3864 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
LMX1BO60663 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC5.46□□□□□ -1.54
LMX1BO60663 UBE3A-205ENST00000566215 3176 ntAPPRIS P3 TSL 1 (best) BASIC5.46□□□□□ -1.54
LMX1BO60663 MIPEPP2-201ENST00000422560 1819 ntBASIC5.46□□□□□ -1.54
LMX1BO60663 LINC02183-201ENST00000637822 1732 ntTSL 5 BASIC5.45□□□□□ -1.54
LMX1BO60663 ZNF566-202ENST00000424129 2644 ntAPPRIS P3 TSL 2 BASIC5.45□□□□□ -1.54
LMX1BO60663 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
LMX1BO60663 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC5.45□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 68 ms