Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC6.29□□□□□ -1.4
PCDH9Q9HC56 OR7E22P-201ENST00000478335 1035 ntBASIC6.29□□□□□ -1.4
PCDH9Q9HC56 PFN2-209ENST00000481275 560 ntTSL 4 BASIC6.29□□□□□ -1.4
PCDH9Q9HC56 RN7SL362P-201ENST00000494228 267 ntBASIC6.29□□□□□ -1.4
PCDH9Q9HC56 AC024587.1-201ENST00000505925 2157 ntBASIC6.29□□□□□ -1.4
PCDH9Q9HC56 MGC32805-204ENST00000509993 783 ntTSL 2 BASIC6.29□□□□□ -1.4
PCDH9Q9HC56 RNU6-362P-201ENST00000516736 90 ntBASIC6.29□□□□□ -1.4
PCDH9Q9HC56 Y_RNA.710-201ENST00000516975 110 ntBASIC6.29□□□□□ -1.4
PCDH9Q9HC56 AC100801.1-201ENST00000517368 517 ntTSL 3 BASIC6.29□□□□□ -1.4
PCDH9Q9HC56 AZIN1-AS1-208ENST00000519257 619 ntTSL 3 BASIC6.29□□□□□ -1.4
PCDH9Q9HC56 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC6.29□□□□□ -1.4
PCDH9Q9HC56 LINC02412-201ENST00000552584 1269 ntTSL 5 BASIC6.29□□□□□ -1.4
PCDH9Q9HC56 AL132989.1-201ENST00000557322 576 ntTSL 3 BASIC6.29□□□□□ -1.4
PCDH9Q9HC56 AC105020.2-201ENST00000564683 572 ntTSL 5 BASIC6.29□□□□□ -1.4
PCDH9Q9HC56 PWRN1-206ENST00000565512 433 ntTSL 2 BASIC6.29□□□□□ -1.4
PCDH9Q9HC56 AL078601.3-201ENST00000573303 535 ntBASIC6.29□□□□□ -1.4
PCDH9Q9HC56 AC141002.1-201ENST00000607025 279 ntBASIC6.29□□□□□ -1.4
PCDH9Q9HC56 RN7SL261P-201ENST00000613441 282 ntBASIC6.29□□□□□ -1.4
PCDH9Q9HC56 AC015574.1-202ENST00000616588 456 ntTSL 5 BASIC6.29□□□□□ -1.4
PCDH9Q9HC56 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC6.29□□□□□ -1.4
PCDH9Q9HC56 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC6.29□□□□□ -1.4
PCDH9Q9HC56 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC6.29□□□□□ -1.4
PCDH9Q9HC56 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
PCDH9Q9HC56 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
PCDH9Q9HC56 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC6.29□□□□□ -1.4
PCDH9Q9HC56 ZNF402P-201ENST00000404435 3100 ntBASIC6.29□□□□□ -1.4
PCDH9Q9HC56 DYNC2LI1-201ENST00000260605 1399 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
PCDH9Q9HC56 AP002004.1-203ENST00000531091 1768 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
PCDH9Q9HC56 AL078595.2-201ENST00000605309 1780 ntBASIC6.29□□□□□ -1.4
PCDH9Q9HC56 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
PCDH9Q9HC56 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC6.28□□□□□ -1.4
PCDH9Q9HC56 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC6.28□□□□□ -1.4
PCDH9Q9HC56 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC6.28□□□□□ -1.4
PCDH9Q9HC56 AC011416.1-201ENST00000514947 1732 ntBASIC6.28□□□□□ -1.4
PCDH9Q9HC56 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
PCDH9Q9HC56 AC008080.4-201ENST00000420185 1589 ntTSL 2 BASIC6.28□□□□□ -1.4
PCDH9Q9HC56 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
PCDH9Q9HC56 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC6.28□□□□□ -1.4
PCDH9Q9HC56 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC6.28□□□□□ -1.4
PCDH9Q9HC56 RN7SKP166-201ENST00000410812 305 ntBASIC6.28□□□□□ -1.4
PCDH9Q9HC56 RN7SKP144-201ENST00000411108 279 ntBASIC6.28□□□□□ -1.4
PCDH9Q9HC56 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC6.28□□□□□ -1.4
PCDH9Q9HC56 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC6.28□□□□□ -1.4
PCDH9Q9HC56 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
PCDH9Q9HC56 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
PCDH9Q9HC56 HNRNPA1P18-201ENST00000433537 927 ntBASIC6.28□□□□□ -1.4
PCDH9Q9HC56 USP24P1-201ENST00000433802 779 ntBASIC6.28□□□□□ -1.4
PCDH9Q9HC56 AC073410.1-201ENST00000435125 589 ntBASIC6.28□□□□□ -1.4
PCDH9Q9HC56 RPS3AP38-201ENST00000435889 763 ntBASIC6.28□□□□□ -1.4
PCDH9Q9HC56 KRTAP2-5P-201ENST00000446109 396 ntBASIC6.28□□□□□ -1.4
PCDH9Q9HC56 AC005165.2-201ENST00000466070 380 ntBASIC6.28□□□□□ -1.4
PCDH9Q9HC56 TRBV5-2-201ENST00000489095 273 ntBASIC6.28□□□□□ -1.4
PCDH9Q9HC56 AP000926.3-201ENST00000497201 299 ntBASIC6.28□□□□□ -1.4
PCDH9Q9HC56 AC112484.3-201ENST00000505910 329 ntBASIC6.28□□□□□ -1.4
PCDH9Q9HC56 ZFPM2-AS1-201ENST00000509144 542 ntTSL 3 BASIC6.28□□□□□ -1.4
PCDH9Q9HC56 RNA5SP441-201ENST00000516809 88 ntBASIC6.28□□□□□ -1.4
PCDH9Q9HC56 AC036111.2-201ENST00000533247 901 ntBASIC6.28□□□□□ -1.4
PCDH9Q9HC56 CLEC2B-202ENST00000538152 745 ntTSL 2 BASIC6.28□□□□□ -1.4
PCDH9Q9HC56 LRTOMT-218ENST00000541614 726 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
PCDH9Q9HC56 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC6.28□□□□□ -1.4
PCDH9Q9HC56 NPM1P42-201ENST00000560329 862 ntBASIC6.28□□□□□ -1.4
PCDH9Q9HC56 LINC01477-201ENST00000566101 1226 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
PCDH9Q9HC56 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC6.28□□□□□ -1.4
PCDH9Q9HC56 AC004034.1-201ENST00000573260 510 ntTSL 3 BASIC6.28□□□□□ -1.4
PCDH9Q9HC56 MIR4420-201ENST00000583944 77 ntBASIC6.28□□□□□ -1.4
PCDH9Q9HC56 AL161457.2-204ENST00000609241 869 ntTSL 5 BASIC6.28□□□□□ -1.4
PCDH9Q9HC56 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC6.28□□□□□ -1.4
PCDH9Q9HC56 MAPK10-350ENST00000641777 965 ntBASIC6.28□□□□□ -1.4
PCDH9Q9HC56 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
PCDH9Q9HC56 AC104662.2-201ENST00000512921 1388 ntAPPRIS P1 TSL 2 BASIC6.28□□□□□ -1.4
PCDH9Q9HC56 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
PCDH9Q9HC56 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
PCDH9Q9HC56 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
PCDH9Q9HC56 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC6.27□□□□□ -1.4
PCDH9Q9HC56 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.41
PCDH9Q9HC56 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC6.27□□□□□ -1.41
PCDH9Q9HC56 AL020995.1-201ENST00000427524 1680 ntTSL 2 BASIC6.27□□□□□ -1.41
PCDH9Q9HC56 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC6.27□□□□□ -1.41
PCDH9Q9HC56 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
PCDH9Q9HC56 AC090181.3-201ENST00000624777 1514 ntBASIC6.27□□□□□ -1.41
PCDH9Q9HC56 NUDT6-202ENST00000339154 1065 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
PCDH9Q9HC56 RN7SKP77-201ENST00000363261 353 ntBASIC6.27□□□□□ -1.41
PCDH9Q9HC56 RN7SKP171-201ENST00000364417 303 ntBASIC6.27□□□□□ -1.41
PCDH9Q9HC56 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC6.27□□□□□ -1.41
PCDH9Q9HC56 YWHAZP6-201ENST00000399764 738 ntBASIC6.27□□□□□ -1.41
PCDH9Q9HC56 RN7SKP86-201ENST00000410454 332 ntBASIC6.27□□□□□ -1.41
PCDH9Q9HC56 AC117434.1-201ENST00000419971 836 ntBASIC6.27□□□□□ -1.41
PCDH9Q9HC56 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC6.27□□□□□ -1.41
PCDH9Q9HC56 GAPDHP59-201ENST00000435908 267 ntBASIC6.27□□□□□ -1.41
PCDH9Q9HC56 CLNS1AP1-201ENST00000435954 682 ntBASIC6.27□□□□□ -1.41
PCDH9Q9HC56 AL512593.1-201ENST00000444758 779 ntBASIC6.27□□□□□ -1.41
PCDH9Q9HC56 AC124945.1-201ENST00000485133 188 ntBASIC6.27□□□□□ -1.41
PCDH9Q9HC56 RPL34P33-201ENST00000486062 334 ntBASIC6.27□□□□□ -1.41
PCDH9Q9HC56 RPL12P30-201ENST00000488389 499 ntBASIC6.27□□□□□ -1.41
PCDH9Q9HC56 AL117692.1-201ENST00000494283 713 ntBASIC6.27□□□□□ -1.41
PCDH9Q9HC56 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC6.27□□□□□ -1.41
PCDH9Q9HC56 AK6-203ENST00000502819 743 ntTSL 5 BASIC6.27□□□□□ -1.41
PCDH9Q9HC56 OCIAD1-216ENST00000509122 1204 ntTSL 5 BASIC6.27□□□□□ -1.41
PCDH9Q9HC56 LINC02503-201ENST00000510505 812 ntTSL 2 BASIC6.27□□□□□ -1.41
PCDH9Q9HC56 HMGN1P17-201ENST00000513734 295 ntBASIC6.27□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 119.7 ms