Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC092865.3-201ENST00000425390 1026 ntBASIC5.71□□□□□ -1.5
FOXA1P55317 AC104463.2-201ENST00000428573 314 ntTSL 5 BASIC5.71□□□□□ -1.5
FOXA1P55317 AL445928.1-201ENST00000435545 222 ntBASIC5.71□□□□□ -1.5
FOXA1P55317 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC5.71□□□□□ -1.5
FOXA1P55317 AC096639.1-201ENST00000456240 347 ntTSL 5 BASIC5.71□□□□□ -1.5
FOXA1P55317 RN7SL269P-201ENST00000467795 305 ntBASIC5.71□□□□□ -1.5
FOXA1P55317 RPL5P12-201ENST00000477071 851 ntBASIC5.71□□□□□ -1.5
FOXA1P55317 AC079080.1-201ENST00000479841 822 ntBASIC5.71□□□□□ -1.5
FOXA1P55317 AC117386.2-203ENST00000489690 557 ntTSL 3 BASIC5.71□□□□□ -1.5
FOXA1P55317 RN7SL284P-201ENST00000498823 275 ntBASIC5.71□□□□□ -1.5
FOXA1P55317 AC008629.2-201ENST00000503783 483 ntBASIC5.71□□□□□ -1.5
FOXA1P55317 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC5.71□□□□□ -1.5
FOXA1P55317 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC5.71□□□□□ -1.5
FOXA1P55317 AC136777.2-201ENST00000522979 358 ntBASIC5.71□□□□□ -1.5
FOXA1P55317 FAU-203ENST00000525297 355 ntTSL 5 BASIC5.71□□□□□ -1.5
FOXA1P55317 AC110056.1-201ENST00000525759 911 ntBASIC5.71□□□□□ -1.5
FOXA1P55317 GLYAT-203ENST00000529732 1070 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
FOXA1P55317 AC090791.1-201ENST00000530960 492 ntTSL 3 BASIC5.71□□□□□ -1.5
FOXA1P55317 AL355838.1-201ENST00000554814 559 ntTSL 4 BASIC5.71□□□□□ -1.5
FOXA1P55317 AC079075.2-201ENST00000557964 449 ntTSL 4 BASIC5.71□□□□□ -1.5
FOXA1P55317 MT1CP-201ENST00000567054 174 ntBASIC5.71□□□□□ -1.5
FOXA1P55317 ZNF174-204ENST00000572544 1002 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
FOXA1P55317 TXNP4-201ENST00000575018 310 ntBASIC5.71□□□□□ -1.5
FOXA1P55317 WBP1LP11-201ENST00000586141 328 ntBASIC5.71□□□□□ -1.5
FOXA1P55317 AC068768.2-201ENST00000602352 343 ntBASIC5.71□□□□□ -1.5
FOXA1P55317 AL133481.2-203ENST00000607558 139 ntBASIC5.71□□□□□ -1.5
FOXA1P55317 AL021918.2-201ENST00000613415 194 ntBASIC5.71□□□□□ -1.5
FOXA1P55317 AC022400.9-201ENST00000623633 273 ntBASIC5.71□□□□□ -1.5
FOXA1P55317 AC079298.3-201ENST00000624941 977 ntTSL 3 BASIC5.71□□□□□ -1.5
FOXA1P55317 LINC02536-201ENST00000625799 625 ntTSL 3 BASIC5.71□□□□□ -1.5
FOXA1P55317 TEX41-271ENST00000628213 993 ntTSL 5 BASIC5.71□□□□□ -1.5
FOXA1P55317 AC073488.3-201ENST00000631611 778 ntBASIC5.71□□□□□ -1.5
FOXA1P55317 AC022021.1-201ENST00000634334 843 ntTSL 5 BASIC5.71□□□□□ -1.5
FOXA1P55317 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
FOXA1P55317 ESRRG-208ENST00000391890 5542 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
FOXA1P55317 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
FOXA1P55317 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
FOXA1P55317 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC5.71□□□□□ -1.5
FOXA1P55317 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
FOXA1P55317 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
FOXA1P55317 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
FOXA1P55317 XIAP-205ENST00000434753 8415 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
FOXA1P55317 LINC00320-204ENST00000437238 2004 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
FOXA1P55317 AC025470.1-201ENST00000510053 2032 ntBASIC5.7□□□□□ -1.5
FOXA1P55317 MFSD8-219ENST00000641228 2559 ntBASIC5.7□□□□□ -1.5
FOXA1P55317 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC5.7□□□□□ -1.5
FOXA1P55317 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
FOXA1P55317 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC5.7□□□□□ -1.5
FOXA1P55317 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC5.7□□□□□ -1.5
FOXA1P55317 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC5.7□□□□□ -1.5
FOXA1P55317 AC009135.2-201ENST00000624136 1768 ntBASIC5.7□□□□□ -1.5
FOXA1P55317 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
FOXA1P55317 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC5.7□□□□□ -1.5
FOXA1P55317 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
FOXA1P55317 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC5.7□□□□□ -1.5
FOXA1P55317 OR7A10-202ENST00000641129 1847 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
FOXA1P55317 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
FOXA1P55317 RN7SKP78-201ENST00000364711 318 ntBASIC5.7□□□□□ -1.5
FOXA1P55317 MIR4435-2HG-203ENST00000409569 514 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
FOXA1P55317 SULT1C2-204ENST00000409880 1206 ntTSL 3 BASIC5.7□□□□□ -1.5
FOXA1P55317 UBE2F-204ENST00000409953 924 ntTSL 3 BASIC5.7□□□□□ -1.5
FOXA1P55317 RPL35AP3-201ENST00000414680 288 ntBASIC5.7□□□□□ -1.5
FOXA1P55317 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC5.7□□□□□ -1.5
FOXA1P55317 AC022173.1-201ENST00000418554 577 ntTSL 4 BASIC5.7□□□□□ -1.5
FOXA1P55317 LINC01114-201ENST00000421071 482 ntTSL 3 BASIC5.7□□□□□ -1.5
FOXA1P55317 RPL7AP14-201ENST00000424041 802 ntBASIC5.7□□□□□ -1.5
FOXA1P55317 AC099782.1-201ENST00000425889 474 ntBASIC5.7□□□□□ -1.5
FOXA1P55317 RPSAP32-201ENST00000432681 526 ntBASIC5.7□□□□□ -1.5
FOXA1P55317 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC5.7□□□□□ -1.5
FOXA1P55317 GAPDHP59-201ENST00000435908 267 ntBASIC5.7□□□□□ -1.5
FOXA1P55317 AL590399.3-202ENST00000448491 495 ntTSL 5 BASIC5.7□□□□□ -1.5
FOXA1P55317 AL158835.1-204ENST00000449693 371 ntTSL 3 BASIC5.7□□□□□ -1.5
FOXA1P55317 AC011752.1-201ENST00000451476 494 ntTSL 5 BASIC5.7□□□□□ -1.5
FOXA1P55317 AC115223.1-201ENST00000466377 870 ntBASIC5.7□□□□□ -1.5
FOXA1P55317 AC006539.1-201ENST00000481419 501 ntBASIC5.7□□□□□ -1.5
FOXA1P55317 AC104779.1-201ENST00000503557 441 ntTSL 3 BASIC5.7□□□□□ -1.5
FOXA1P55317 NR1I3-229ENST00000511748 480 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
FOXA1P55317 RNA5SP441-201ENST00000516809 88 ntBASIC5.7□□□□□ -1.5
FOXA1P55317 AP001893.1-201ENST00000532866 362 ntTSL 5 BASIC5.7□□□□□ -1.5
FOXA1P55317 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC5.7□□□□□ -1.5
FOXA1P55317 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC5.7□□□□□ -1.5
FOXA1P55317 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
FOXA1P55317 AC103968.1-201ENST00000557841 573 ntBASIC5.7□□□□□ -1.5
FOXA1P55317 AC007346.1-201ENST00000569208 867 ntBASIC5.7□□□□□ -1.5
FOXA1P55317 AC233699.1-201ENST00000569955 1168 ntBASIC5.7□□□□□ -1.5
FOXA1P55317 AC010401.2-202ENST00000570663 396 ntTSL 2 BASIC5.7□□□□□ -1.5
FOXA1P55317 GARSP1-201ENST00000570895 719 ntBASIC5.7□□□□□ -1.5
FOXA1P55317 AL078601.3-201ENST00000573303 535 ntBASIC5.7□□□□□ -1.5
FOXA1P55317 LINC01533-204ENST00000590719 435 ntTSL 5 BASIC5.7□□□□□ -1.5
FOXA1P55317 AL352984.2-201ENST00000611153 546 ntBASIC5.7□□□□□ -1.5
FOXA1P55317 AL161457.2-201ENST00000629181 630 ntTSL 5 BASIC5.7□□□□□ -1.5
FOXA1P55317 ZNF402P-201ENST00000404435 3100 ntBASIC5.7□□□□□ -1.5
FOXA1P55317 AC140479.2-201ENST00000421567 3130 ntBASIC5.7□□□□□ -1.5
FOXA1P55317 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
FOXA1P55317 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC5.7□□□□□ -1.5
FOXA1P55317 FBXL21-201ENST00000297158 1305 ntBASIC5.7□□□□□ -1.5
FOXA1P55317 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC5.7□□□□□ -1.5
FOXA1P55317 OR2J2-203ENST00000641417 2392 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
FOXA1P55317 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC5.7□□□□□ -1.5
FOXA1P55317 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 76.9 ms