Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 ARHGAP29-201ENST00000260526 6087 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
LIG3P49916 AC110597.1-201ENST00000562669 3176 ntBASIC7.43□□□□□ -1.22
LIG3P49916 ANKRD17-203ENST00000509867 8105 ntAPPRIS ALT2 TSL 1 (best) BASIC7.43□□□□□ -1.22
LIG3P49916 OAS2-202ENST00000392583 4734 ntAPPRIS ALT2 TSL 1 (best) BASIC7.43□□□□□ -1.22
LIG3P49916 AP003486.1-201ENST00000525716 3994 ntBASIC7.43□□□□□ -1.22
LIG3P49916 CYLD-203ENST00000427738 8503 ntTSL 5 BASIC7.43□□□□□ -1.22
LIG3P49916 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC7.43□□□□□ -1.22
LIG3P49916 AP002026.1-201ENST00000500358 4825 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
LIG3P49916 CATSPER2-202ENST00000381761 1758 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
LIG3P49916 TMBIM6-202ENST00000395006 2598 ntAPPRIS P3 TSL 1 (best) BASIC7.43□□□□□ -1.22
LIG3P49916 LINC00907-205ENST00000589068 1812 ntTSL 2 BASIC7.43□□□□□ -1.22
LIG3P49916 TRAF5-202ENST00000336184 3972 ntAPPRIS P1 TSL 5 BASIC7.43□□□□□ -1.22
LIG3P49916 PRRC2C-202ENST00000367742 10366 ntAPPRIS ALT2 TSL 5 BASIC7.43□□□□□ -1.22
LIG3P49916 KDM4C-215ENST00000543771 3332 ntTSL 2 BASIC7.42□□□□□ -1.22
LIG3P49916 PCBP1-AS1-210ENST00000416395 2451 ntTSL 2 BASIC7.42□□□□□ -1.22
LIG3P49916 AC139426.3-201ENST00000605648 2059 ntBASIC7.42□□□□□ -1.22
LIG3P49916 SLC25A40-201ENST00000341119 4045 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
LIG3P49916 ZNF790-206ENST00000613249 2183 ntAPPRIS P1 TSL 4 BASIC7.42□□□□□ -1.22
LIG3P49916 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
LIG3P49916 UTP4-204ENST00000563094 4183 ntTSL 2 BASIC7.42□□□□□ -1.22
LIG3P49916 PKIA-201ENST00000352966 1736 ntAPPRIS P1 TSL 2 BASIC7.42□□□□□ -1.22
LIG3P49916 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
LIG3P49916 P2RY14-202ENST00000424796 1780 ntAPPRIS P1 TSL 2 BASIC7.42□□□□□ -1.22
LIG3P49916 SNX18P3-202ENST00000565670 1750 ntBASIC7.42□□□□□ -1.22
LIG3P49916 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC7.42□□□□□ -1.22
LIG3P49916 Y_RNA.51-201ENST00000362725 102 ntBASIC7.42□□□□□ -1.22
LIG3P49916 RNA5SP238-201ENST00000365464 120 ntBASIC7.42□□□□□ -1.22
LIG3P49916 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC7.42□□□□□ -1.22
LIG3P49916 MIR205HG-201ENST00000366437 704 ntTSL 3 BASIC7.42□□□□□ -1.22
LIG3P49916 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
LIG3P49916 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC7.42□□□□□ -1.22
LIG3P49916 AL355379.1-201ENST00000405542 640 ntBASIC7.42□□□□□ -1.22
LIG3P49916 AL590084.1-201ENST00000407885 387 ntBASIC7.42□□□□□ -1.22
LIG3P49916 RNU4-74P-201ENST00000411280 161 ntBASIC7.42□□□□□ -1.22
LIG3P49916 LINC01505-201ENST00000411451 686 ntTSL 3 BASIC7.42□□□□□ -1.22
LIG3P49916 RPS21P8-201ENST00000413365 247 ntBASIC7.42□□□□□ -1.22
LIG3P49916 AC096537.2-201ENST00000413707 714 ntBASIC7.42□□□□□ -1.22
LIG3P49916 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC7.42□□□□□ -1.22
LIG3P49916 LMLN-AS1-201ENST00000423460 542 ntTSL 5 BASIC7.42□□□□□ -1.22
LIG3P49916 OR5P4P-201ENST00000424698 917 ntBASIC7.42□□□□□ -1.22
LIG3P49916 LINC01049-201ENST00000426840 742 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
LIG3P49916 CENPN-204ENST00000428963 971 ntTSL 2 BASIC7.42□□□□□ -1.22
LIG3P49916 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
LIG3P49916 OR51B8P-201ENST00000449892 769 ntBASIC7.42□□□□□ -1.22
LIG3P49916 AC009411.2-201ENST00000458359 539 ntTSL 4 BASIC7.42□□□□□ -1.22
LIG3P49916 AC069528.1-202ENST00000482888 637 ntBASIC7.42□□□□□ -1.22
LIG3P49916 PFN2-217ENST00000498307 556 ntTSL 4 BASIC7.42□□□□□ -1.22
LIG3P49916 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC7.42□□□□□ -1.22
LIG3P49916 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC7.42□□□□□ -1.22
LIG3P49916 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC7.42□□□□□ -1.22
LIG3P49916 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC7.42□□□□□ -1.22
LIG3P49916 C5orf58-205ENST00000524171 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC7.42□□□□□ -1.22
LIG3P49916 DEFB130C-202ENST00000530001 230 ntBASIC7.42□□□□□ -1.22
LIG3P49916 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC7.42□□□□□ -1.22
LIG3P49916 ATP5J2P4-201ENST00000538774 267 ntBASIC7.42□□□□□ -1.22
LIG3P49916 EGLN3P1-201ENST00000541727 720 ntBASIC7.42□□□□□ -1.22
LIG3P49916 MYL6-211ENST00000548580 528 ntTSL 2 BASIC7.42□□□□□ -1.22
LIG3P49916 AL121839.1-201ENST00000556233 1185 ntBASIC7.42□□□□□ -1.22
LIG3P49916 AL132640.2-202ENST00000559732 614 ntBASIC7.42□□□□□ -1.22
LIG3P49916 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC7.42□□□□□ -1.22
LIG3P49916 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC7.42□□□□□ -1.22
LIG3P49916 AC012447.1-201ENST00000577914 682 ntTSL 3 BASIC7.42□□□□□ -1.22
LIG3P49916 AP006587.6-201ENST00000582128 1091 ntBASIC7.42□□□□□ -1.22
LIG3P49916 AC015688.2-201ENST00000584523 262 ntBASIC7.42□□□□□ -1.22
LIG3P49916 AP001269.3-201ENST00000588718 329 ntBASIC7.42□□□□□ -1.22
LIG3P49916 AC118757.1-202ENST00000589074 609 ntTSL 2 BASIC7.42□□□□□ -1.22
LIG3P49916 AC006116.6-201ENST00000593258 1103 ntBASIC7.42□□□□□ -1.22
LIG3P49916 AC053481.5-201ENST00000602932 397 ntAPPRIS P1 TSL 5 BASIC7.42□□□□□ -1.22
LIG3P49916 AL021707.7-201ENST00000607991 416 ntBASIC7.42□□□□□ -1.22
LIG3P49916 AP000255.1-201ENST00000610276 676 ntBASIC7.42□□□□□ -1.22
LIG3P49916 AL139123.1-201ENST00000612008 430 ntBASIC7.42□□□□□ -1.22
LIG3P49916 AC080112.3-201ENST00000612552 880 ntBASIC7.42□□□□□ -1.22
LIG3P49916 AC018659.2-201ENST00000624690 715 ntBASIC7.42□□□□□ -1.22
LIG3P49916 PCDH15-213ENST00000395445 5917 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
LIG3P49916 TRIM64EP-201ENST00000531233 1307 ntBASIC7.42□□□□□ -1.22
LIG3P49916 Z98257.1-202ENST00000431027 2493 ntTSL 5 BASIC7.42□□□□□ -1.22
LIG3P49916 NOX1-204ENST00000372966 2529 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
LIG3P49916 MEF2C-244ENST00000636998 5936 ntTSL 5 BASIC7.42□□□□□ -1.22
LIG3P49916 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC7.42□□□□□ -1.22
LIG3P49916 AC008163.1-201ENST00000636281 1455 ntTSL 5 BASIC7.42□□□□□ -1.22
LIG3P49916 DMD-202ENST00000343523 5623 ntTSL 5 BASIC7.42□□□□□ -1.22
LIG3P49916 LINC01232-204ENST00000626729 2796 ntTSL 2 BASIC7.42□□□□□ -1.22
LIG3P49916 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC7.41□□□□□ -1.22
LIG3P49916 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC7.41□□□□□ -1.22
LIG3P49916 AC100858.3-201ENST00000533516 1605 ntTSL 5 BASIC7.41□□□□□ -1.22
LIG3P49916 SPRY3-201ENST00000302805 9019 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
LIG3P49916 TMEM68-219ENST00000617977 4512 ntTSL 5 BASIC7.41□□□□□ -1.22
LIG3P49916 AP4E1-203ENST00000560508 6653 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
LIG3P49916 PAK3-203ENST00000372007 8940 ntAPPRIS P3 TSL 1 (best) BASIC7.41□□□□□ -1.22
LIG3P49916 ABL2-201ENST00000344730 6910 ntAPPRIS ALT2 TSL 1 (best) BASIC7.41□□□□□ -1.22
LIG3P49916 ITGA2-201ENST00000296585 7869 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
LIG3P49916 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
LIG3P49916 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC7.41□□□□□ -1.22
LIG3P49916 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
LIG3P49916 AC073365.1-203ENST00000641055 1992 ntBASIC7.41□□□□□ -1.22
LIG3P49916 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
LIG3P49916 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
LIG3P49916 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC7.41□□□□□ -1.22
LIG3P49916 IL22-201ENST00000328087 1150 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
LIG3P49916 KLRG1-202ENST00000356986 1206 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 112.7 ms