Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 NME1P1-201ENST00000420914 382 ntBASIC5.95□□□□□ -1.46
HOXC4P09017 RPS29P14-201ENST00000431518 171 ntBASIC5.95□□□□□ -1.46
HOXC4P09017 NDUFS5P5-201ENST00000437256 321 ntBASIC5.95□□□□□ -1.46
HOXC4P09017 AC108488.1-202ENST00000439547 482 ntTSL 3 BASIC5.95□□□□□ -1.46
HOXC4P09017 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC5.95□□□□□ -1.46
HOXC4P09017 AL022319.1-201ENST00000458183 1167 ntBASIC5.95□□□□□ -1.46
HOXC4P09017 AC011476.1-201ENST00000466725 307 ntBASIC5.95□□□□□ -1.46
HOXC4P09017 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC5.95□□□□□ -1.46
HOXC4P09017 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
HOXC4P09017 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC5.95□□□□□ -1.46
HOXC4P09017 OR4A40P-201ENST00000533878 948 ntBASIC5.95□□□□□ -1.46
HOXC4P09017 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC5.95□□□□□ -1.46
HOXC4P09017 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC5.95□□□□□ -1.46
HOXC4P09017 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC5.95□□□□□ -1.46
HOXC4P09017 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC5.95□□□□□ -1.46
HOXC4P09017 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC5.95□□□□□ -1.46
HOXC4P09017 AC008395.1-201ENST00000601752 607 ntTSL 5 BASIC5.95□□□□□ -1.46
HOXC4P09017 AL117336.3-201ENST00000603160 1107 ntTSL 3 BASIC5.95□□□□□ -1.46
HOXC4P09017 AC100767.2-201ENST00000604840 693 ntBASIC5.95□□□□□ -1.46
HOXC4P09017 AL138960.1-201ENST00000613838 513 ntBASIC5.95□□□□□ -1.46
HOXC4P09017 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC5.95□□□□□ -1.46
HOXC4P09017 AL391117.1-201ENST00000640003 1186 ntTSL 5 BASIC5.95□□□□□ -1.46
HOXC4P09017 AC119674.1-202ENST00000641333 1860 ntBASIC5.95□□□□□ -1.46
HOXC4P09017 OR2T5-201ENST00000641363 2525 ntAPPRIS P1 BASIC5.95□□□□□ -1.46
HOXC4P09017 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC5.95□□□□□ -1.46
HOXC4P09017 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC5.95□□□□□ -1.46
HOXC4P09017 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC5.95□□□□□ -1.46
HOXC4P09017 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC5.95□□□□□ -1.46
HOXC4P09017 PRRC2C-202ENST00000367742 10366 ntAPPRIS ALT2 TSL 5 BASIC5.95□□□□□ -1.46
HOXC4P09017 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC5.95□□□□□ -1.46
HOXC4P09017 PRICKLE1-202ENST00000445766 4075 ntAPPRIS P1 TSL 5 BASIC5.94□□□□□ -1.46
HOXC4P09017 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC5.94□□□□□ -1.46
HOXC4P09017 FASTKD2-203ENST00000403094 2344 ntAPPRIS P1 TSL 5 BASIC5.94□□□□□ -1.46
HOXC4P09017 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
HOXC4P09017 SHQ1P1-201ENST00000437111 1544 ntBASIC5.94□□□□□ -1.46
HOXC4P09017 PKIB-207ENST00000392491 1379 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
HOXC4P09017 PSG7-206ENST00000623675 1392 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
HOXC4P09017 NSF-206ENST00000575068 2667 ntTSL 2 BASIC5.94□□□□□ -1.46
HOXC4P09017 AC008040.1-202ENST00000483289 6251 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
HOXC4P09017 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
HOXC4P09017 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
HOXC4P09017 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
HOXC4P09017 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
HOXC4P09017 ZCCHC6-204ENST00000375957 2262 ntTSL 2 BASIC5.94□□□□□ -1.46
HOXC4P09017 NHS-205ENST00000617601 8163 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
HOXC4P09017 ZNF28-201ENST00000339844 650 ntTSL 4 BASIC5.94□□□□□ -1.46
HOXC4P09017 RNU1-150P-201ENST00000362491 162 ntBASIC5.94□□□□□ -1.46
HOXC4P09017 RN7SKP128-201ENST00000364270 303 ntBASIC5.94□□□□□ -1.46
HOXC4P09017 LYPLA1P3-201ENST00000402650 695 ntBASIC5.94□□□□□ -1.46
HOXC4P09017 AL096800.1-201ENST00000405326 893 ntBASIC5.94□□□□□ -1.46
HOXC4P09017 BCL11A-205ENST00000409351 756 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
HOXC4P09017 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC5.94□□□□□ -1.46
HOXC4P09017 AC007568.1-201ENST00000422912 471 ntBASIC5.94□□□□□ -1.46
HOXC4P09017 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC5.94□□□□□ -1.46
HOXC4P09017 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC5.94□□□□□ -1.46
HOXC4P09017 RPL23AP19-201ENST00000436229 369 ntBASIC5.94□□□□□ -1.46
HOXC4P09017 BMS1P10-201ENST00000443754 1120 ntBASIC5.94□□□□□ -1.46
HOXC4P09017 AL358876.1-201ENST00000453364 1075 ntBASIC5.94□□□□□ -1.46
HOXC4P09017 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC5.94□□□□□ -1.46
HOXC4P09017 PDE4D-225ENST00000515835 590 ntTSL 4 BASIC5.94□□□□□ -1.46
HOXC4P09017 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC5.94□□□□□ -1.46
HOXC4P09017 AP000763.3-201ENST00000542598 334 ntTSL 5 BASIC5.94□□□□□ -1.46
HOXC4P09017 AC068305.2-201ENST00000550567 1205 ntBASIC5.94□□□□□ -1.46
HOXC4P09017 AL356801.1-201ENST00000559320 294 ntBASIC5.94□□□□□ -1.46
HOXC4P09017 MIR4776-2-201ENST00000580204 80 ntBASIC5.94□□□□□ -1.46
HOXC4P09017 COX6CP7-201ENST00000597056 208 ntBASIC5.94□□□□□ -1.46
HOXC4P09017 ASNSD1-208ENST00000607690 535 ntTSL 2 BASIC5.94□□□□□ -1.46
HOXC4P09017 AC004836.1-201ENST00000623032 634 ntBASIC5.94□□□□□ -1.46
HOXC4P09017 SNX18P12-201ENST00000624821 759 ntBASIC5.94□□□□□ -1.46
HOXC4P09017 AL161457.2-201ENST00000629181 630 ntTSL 5 BASIC5.94□□□□□ -1.46
HOXC4P09017 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC5.94□□□□□ -1.46
HOXC4P09017 AC012564.1-201ENST00000636802 557 ntTSL 4 BASIC5.94□□□□□ -1.46
HOXC4P09017 BX284613.1-201ENST00000452221 1641 ntBASIC5.94□□□□□ -1.46
HOXC4P09017 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC5.94□□□□□ -1.46
HOXC4P09017 KIF27-202ENST00000334204 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC5.94□□□□□ -1.46
HOXC4P09017 PATJ-203ENST00000371158 8505 ntAPPRIS P1 TSL 5 BASIC5.94□□□□□ -1.46
HOXC4P09017 TCF12-214ENST00000559710 1314 ntTSL 2 BASIC5.94□□□□□ -1.46
HOXC4P09017 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
HOXC4P09017 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
HOXC4P09017 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC5.94□□□□□ -1.46
HOXC4P09017 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC5.94□□□□□ -1.46
HOXC4P09017 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
HOXC4P09017 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
HOXC4P09017 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
HOXC4P09017 NCAPG2-202ENST00000409339 5253 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
HOXC4P09017 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC5.93□□□□□ -1.46
HOXC4P09017 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC5.93□□□□□ -1.46
HOXC4P09017 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
HOXC4P09017 PLEKHH2-201ENST00000282406 6981 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
HOXC4P09017 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC5.93□□□□□ -1.46
HOXC4P09017 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
HOXC4P09017 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
HOXC4P09017 SELENOWP1-201ENST00000322792 252 ntBASIC5.93□□□□□ -1.46
HOXC4P09017 CAPSL-201ENST00000397366 969 ntAPPRIS P1 TSL 3 BASIC5.93□□□□□ -1.46
HOXC4P09017 LINC01047-201ENST00000415193 778 ntTSL 5 BASIC5.93□□□□□ -1.46
HOXC4P09017 C7orf69-201ENST00000418326 675 ntTSL 4 BASIC5.93□□□□□ -1.46
HOXC4P09017 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
HOXC4P09017 HNRNPA1P18-201ENST00000433537 927 ntBASIC5.93□□□□□ -1.46
HOXC4P09017 HLA-DPA3-207ENST00000454398 229 ntBASIC5.93□□□□□ -1.46
HOXC4P09017 AC112187.1-201ENST00000455837 479 ntBASIC5.93□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 83.8 ms