Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 CLNS1AP1-201ENST00000435954 682 ntBASIC5.38□□□□□ -1.55
NKX3-1Q99801 AC010086.1-201ENST00000437359 1052 ntBASIC5.38□□□□□ -1.55
NKX3-1Q99801 PIK3IP1-AS1-201ENST00000440456 554 ntTSL 3 BASIC5.38□□□□□ -1.55
NKX3-1Q99801 AC234771.2-201ENST00000445718 597 ntBASIC5.38□□□□□ -1.55
NKX3-1Q99801 AC099670.1-201ENST00000455141 783 ntBASIC5.38□□□□□ -1.55
NKX3-1Q99801 RN7SL393P-201ENST00000463588 296 ntBASIC5.38□□□□□ -1.55
NKX3-1Q99801 RPL29P23-201ENST00000486188 442 ntBASIC5.38□□□□□ -1.55
NKX3-1Q99801 AC245088.1-201ENST00000486508 384 ntTSL 3 BASIC5.38□□□□□ -1.55
NKX3-1Q99801 RN7SL714P-201ENST00000487050 298 ntBASIC5.38□□□□□ -1.55
NKX3-1Q99801 RPL9P15-201ENST00000491096 532 ntBASIC5.38□□□□□ -1.55
NKX3-1Q99801 NACAP5-201ENST00000509863 636 ntBASIC5.38□□□□□ -1.55
NKX3-1Q99801 RN7SKP5-201ENST00000517045 272 ntBASIC5.38□□□□□ -1.55
NKX3-1Q99801 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC5.38□□□□□ -1.55
NKX3-1Q99801 AC090651.1-201ENST00000567865 634 ntBASIC5.38□□□□□ -1.55
NKX3-1Q99801 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC5.38□□□□□ -1.55
NKX3-1Q99801 AC010326.3-201ENST00000597780 679 ntTSL 5 BASIC5.38□□□□□ -1.55
NKX3-1Q99801 BPIFA4P-204ENST00000605211 656 ntTSL 2 BASIC5.38□□□□□ -1.55
NKX3-1Q99801 AC015819.1-201ENST00000613588 663 ntBASIC5.38□□□□□ -1.55
NKX3-1Q99801 OR1N2-202ENST00000616791 993 ntAPPRIS P2 BASIC5.38□□□□□ -1.55
NKX3-1Q99801 AC005899.7-201ENST00000618199 588 ntBASIC5.38□□□□□ -1.55
NKX3-1Q99801 Metazoa_SRP.81-201ENST00000618466 316 ntBASIC5.38□□□□□ -1.55
NKX3-1Q99801 MIR7854-201ENST00000620068 65 ntBASIC5.38□□□□□ -1.55
NKX3-1Q99801 AL162377.2-201ENST00000624532 337 ntBASIC5.38□□□□□ -1.55
NKX3-1Q99801 AL161457.2-202ENST00000629161 743 ntTSL 5 BASIC5.38□□□□□ -1.55
NKX3-1Q99801 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
NKX3-1Q99801 ZNF480-201ENST00000334564 1843 ntAPPRIS ALT2 TSL 2 BASIC5.38□□□□□ -1.55
NKX3-1Q99801 AP002512.4-202ENST00000641599 4530 ntBASIC5.38□□□□□ -1.55
NKX3-1Q99801 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC5.38□□□□□ -1.55
NKX3-1Q99801 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
NKX3-1Q99801 OR14A16-202ENST00000641093 1367 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
NKX3-1Q99801 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
NKX3-1Q99801 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC5.38□□□□□ -1.55
NKX3-1Q99801 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
NKX3-1Q99801 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
NKX3-1Q99801 AC024587.1-201ENST00000505925 2157 ntBASIC5.38□□□□□ -1.55
NKX3-1Q99801 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
NKX3-1Q99801 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC5.38□□□□□ -1.55
NKX3-1Q99801 RASSF8-213ENST00000542865 2219 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
NKX3-1Q99801 AL133243.2-201ENST00000610331 1621 ntBASIC5.37□□□□□ -1.55
NKX3-1Q99801 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
NKX3-1Q99801 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
NKX3-1Q99801 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
NKX3-1Q99801 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC5.37□□□□□ -1.55
NKX3-1Q99801 AC087516.1-201ENST00000561236 2428 ntBASIC5.37□□□□□ -1.55
NKX3-1Q99801 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
NKX3-1Q99801 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
NKX3-1Q99801 AC092692.1-201ENST00000623625 2595 ntBASIC5.37□□□□□ -1.55
NKX3-1Q99801 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC5.37□□□□□ -1.55
NKX3-1Q99801 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
NKX3-1Q99801 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
NKX3-1Q99801 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
NKX3-1Q99801 AL139352.1-201ENST00000255183 1001 ntTSL 2 BASIC5.37□□□□□ -1.55
NKX3-1Q99801 HHLA3-201ENST00000359875 898 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
NKX3-1Q99801 SNORD16-201ENST00000362803 99 ntBASIC5.37□□□□□ -1.55
NKX3-1Q99801 AC083799.1-201ENST00000366451 910 ntBASIC5.37□□□□□ -1.55
NKX3-1Q99801 ZNF669-202ENST00000366500 489 ntTSL 3 BASIC5.37□□□□□ -1.55
NKX3-1Q99801 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
NKX3-1Q99801 MRPS6P2-201ENST00000381143 370 ntBASIC5.37□□□□□ -1.55
NKX3-1Q99801 AC026310.1-201ENST00000396004 378 ntBASIC5.37□□□□□ -1.55
NKX3-1Q99801 AL050305.1-201ENST00000399993 1230 ntBASIC5.37□□□□□ -1.55
NKX3-1Q99801 AL354707.3-201ENST00000427308 331 ntBASIC5.37□□□□□ -1.55
NKX3-1Q99801 PRH1-201ENST00000428168 603 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
NKX3-1Q99801 AL445623.1-201ENST00000440888 237 ntTSL 3 BASIC5.37□□□□□ -1.55
NKX3-1Q99801 AC104457.2-201ENST00000446055 467 ntTSL 2 BASIC5.37□□□□□ -1.55
NKX3-1Q99801 COX4I1P2-201ENST00000447446 547 ntBASIC5.37□□□□□ -1.55
NKX3-1Q99801 HBBP1-202ENST00000454892 455 ntTSL 2 BASIC5.37□□□□□ -1.55
NKX3-1Q99801 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC5.37□□□□□ -1.55
NKX3-1Q99801 RN7SL83P-201ENST00000468131 297 ntBASIC5.37□□□□□ -1.55
NKX3-1Q99801 AL355032.1-201ENST00000472981 438 ntBASIC5.37□□□□□ -1.55
NKX3-1Q99801 SH2D1A-203ENST00000477673 461 ntTSL 2 BASIC5.37□□□□□ -1.55
NKX3-1Q99801 RN7SL104P-201ENST00000498686 293 ntBASIC5.37□□□□□ -1.55
NKX3-1Q99801 AC106864.2-201ENST00000505632 740 ntTSL 2 BASIC5.37□□□□□ -1.55
NKX3-1Q99801 AC130364.2-201ENST00000528639 604 ntBASIC5.37□□□□□ -1.55
NKX3-1Q99801 TMEM126B-211ENST00000534341 1273 ntTSL 2 BASIC5.37□□□□□ -1.55
NKX3-1Q99801 AC022509.1-202ENST00000537525 494 ntTSL 4 BASIC5.37□□□□□ -1.55
NKX3-1Q99801 NPIPB1P-201ENST00000547442 1129 ntTSL 5 BASIC5.37□□□□□ -1.55
NKX3-1Q99801 MYL2-203ENST00000548438 664 ntTSL 3 BASIC5.37□□□□□ -1.55
NKX3-1Q99801 AC078778.2-201ENST00000553061 567 ntTSL 5 BASIC5.37□□□□□ -1.55
NKX3-1Q99801 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC5.37□□□□□ -1.55
NKX3-1Q99801 AC105243.1-201ENST00000563172 1165 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
NKX3-1Q99801 GLYATL1P2-202ENST00000588046 902 ntBASIC5.37□□□□□ -1.55
NKX3-1Q99801 NPIPB1P-202ENST00000588786 828 ntBASIC5.37□□□□□ -1.55
NKX3-1Q99801 AC007786.1-202ENST00000590607 443 ntTSL 3 BASIC5.37□□□□□ -1.55
NKX3-1Q99801 AC005332.4-201ENST00000592752 579 ntBASIC5.37□□□□□ -1.55
NKX3-1Q99801 AC114477.1-201ENST00000605097 605 ntBASIC5.37□□□□□ -1.55
NKX3-1Q99801 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC5.37□□□□□ -1.55
NKX3-1Q99801 UBA3-213ENST00000631029 123 ntTSL 5 BASIC5.37□□□□□ -1.55
NKX3-1Q99801 AC116667.2-201ENST00000641075 823 ntBASIC5.37□□□□□ -1.55
NKX3-1Q99801 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
NKX3-1Q99801 AL137141.1-201ENST00000624622 4836 ntBASIC5.37□□□□□ -1.55
NKX3-1Q99801 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
NKX3-1Q99801 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
NKX3-1Q99801 CASC19-255ENST00000641733 1385 ntBASIC5.37□□□□□ -1.55
NKX3-1Q99801 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
NKX3-1Q99801 CHN1-204ENST00000409597 1445 ntTSL 3 BASIC5.37□□□□□ -1.55
NKX3-1Q99801 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC5.37□□□□□ -1.55
NKX3-1Q99801 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
NKX3-1Q99801 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC5.37□□□□□ -1.55
NKX3-1Q99801 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
NKX3-1Q99801 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 121.4 ms