Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
FOXA1P55317 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC5.73□□□□□ -1.49
FOXA1P55317 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
FOXA1P55317 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
FOXA1P55317 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
FOXA1P55317 TINAG-201ENST00000259782 1754 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
FOXA1P55317 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
FOXA1P55317 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
FOXA1P55317 BMP10-201ENST00000295379 1584 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
FOXA1P55317 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
FOXA1P55317 IFRD1-216ENST00000535603 3397 ntTSL 2 BASIC5.73□□□□□ -1.49
FOXA1P55317 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
FOXA1P55317 SNRPEP6-201ENST00000407465 277 ntBASIC5.73□□□□□ -1.49
FOXA1P55317 AL445224.1-201ENST00000420595 737 ntTSL 5 BASIC5.73□□□□□ -1.49
FOXA1P55317 RPL7AP51-201ENST00000422016 760 ntBASIC5.73□□□□□ -1.49
FOXA1P55317 AC130360.1-201ENST00000425489 1117 ntBASIC5.73□□□□□ -1.49
FOXA1P55317 AC244453.3-201ENST00000426275 459 ntTSL 5 BASIC5.73□□□□□ -1.49
FOXA1P55317 AC099677.3-201ENST00000427081 395 ntBASIC5.73□□□□□ -1.49
FOXA1P55317 AC083795.1-201ENST00000491760 320 ntBASIC5.73□□□□□ -1.49
FOXA1P55317 AC106822.1-201ENST00000502647 526 ntBASIC5.73□□□□□ -1.49
FOXA1P55317 OR7E99P-201ENST00000505750 922 ntBASIC5.73□□□□□ -1.49
FOXA1P55317 AC008957.1-202ENST00000512329 681 ntTSL 3 BASIC5.73□□□□□ -1.49
FOXA1P55317 AC116917.1-201ENST00000520558 305 ntBASIC5.73□□□□□ -1.49
FOXA1P55317 AC130365.2-201ENST00000525882 1201 ntBASIC5.73□□□□□ -1.49
FOXA1P55317 AP001000.1-201ENST00000526843 742 ntBASIC5.73□□□□□ -1.49
FOXA1P55317 RAB30-209ENST00000532548 644 ntTSL 3 BASIC5.73□□□□□ -1.49
FOXA1P55317 OLR1-210ENST00000544577 924 ntTSL 5 BASIC5.73□□□□□ -1.49
FOXA1P55317 AC093525.4-201ENST00000562232 459 ntTSL 5 BASIC5.73□□□□□ -1.49
FOXA1P55317 AC087392.1-201ENST00000576252 820 ntTSL 2 BASIC5.73□□□□□ -1.49
FOXA1P55317 STARD6-202ENST00000577499 696 ntTSL 2 BASIC5.73□□□□□ -1.49
FOXA1P55317 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC5.73□□□□□ -1.49
FOXA1P55317 CBLN2-208ENST00000584764 543 ntTSL 4 BASIC5.73□□□□□ -1.49
FOXA1P55317 IGFL2-AS1-206ENST00000601263 446 ntTSL 3 BASIC5.73□□□□□ -1.49
FOXA1P55317 AC025857.2-201ENST00000602711 238 ntBASIC5.73□□□□□ -1.49
FOXA1P55317 MUC1-221ENST00000610359 1101 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
FOXA1P55317 MUC1-227ENST00000615517 951 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
FOXA1P55317 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
FOXA1P55317 AC073488.6-201ENST00000632293 754 ntBASIC5.73□□□□□ -1.49
FOXA1P55317 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
FOXA1P55317 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
FOXA1P55317 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC5.73□□□□□ -1.49
FOXA1P55317 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC5.73□□□□□ -1.49
FOXA1P55317 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
FOXA1P55317 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC5.73□□□□□ -1.49
FOXA1P55317 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC5.72□□□□□ -1.49
FOXA1P55317 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC5.72□□□□□ -1.49
FOXA1P55317 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC5.72□□□□□ -1.49
FOXA1P55317 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC5.72□□□□□ -1.49
FOXA1P55317 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
FOXA1P55317 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
FOXA1P55317 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
FOXA1P55317 MARK2P4-201ENST00000503381 2380 ntBASIC5.72□□□□□ -1.49
FOXA1P55317 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
FOXA1P55317 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
FOXA1P55317 CDH7-201ENST00000323011 2728 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
FOXA1P55317 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
FOXA1P55317 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
FOXA1P55317 LINC02086-202ENST00000492522 2091 ntTSL 5 BASIC5.72□□□□□ -1.49
FOXA1P55317 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
FOXA1P55317 OR2L2-201ENST00000366479 1134 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
FOXA1P55317 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
FOXA1P55317 RPA3-204ENST00000406109 434 ntTSL 3 BASIC5.72□□□□□ -1.49
FOXA1P55317 RN7SKP17-201ENST00000411242 351 ntBASIC5.72□□□□□ -1.49
FOXA1P55317 GAS5-202ENST00000414075 413 ntTSL 2 BASIC5.72□□□□□ -1.49
FOXA1P55317 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
FOXA1P55317 AC010240.2-201ENST00000445363 1205 ntBASIC5.72□□□□□ -1.49
FOXA1P55317 PPIAP7-201ENST00000454070 489 ntBASIC5.72□□□□□ -1.49
FOXA1P55317 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC5.72□□□□□ -1.49
FOXA1P55317 AC004129.2-201ENST00000457229 287 ntBASIC5.72□□□□□ -1.49
FOXA1P55317 SNRPCP11-201ENST00000492453 205 ntBASIC5.72□□□□□ -1.49
FOXA1P55317 TPT1-AS1-209ENST00000520585 818 ntTSL 5 BASIC5.72□□□□□ -1.49
FOXA1P55317 AC090155.1-201ENST00000520800 407 ntTSL 3 BASIC5.72□□□□□ -1.49
FOXA1P55317 AP000620.1-201ENST00000527147 504 ntBASIC5.72□□□□□ -1.49
FOXA1P55317 AL359232.1-202ENST00000556874 1206 ntTSL 2 BASIC5.72□□□□□ -1.49
FOXA1P55317 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC5.72□□□□□ -1.49
FOXA1P55317 RPGRIP1L-208ENST00000566096 893 ntTSL 2 BASIC5.72□□□□□ -1.49
FOXA1P55317 ZNF682-208ENST00000596019 552 ntTSL 5 BASIC5.72□□□□□ -1.49
FOXA1P55317 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC5.72□□□□□ -1.49
FOXA1P55317 AC015819.1-201ENST00000613588 663 ntBASIC5.72□□□□□ -1.49
FOXA1P55317 AC134980.1-214ENST00000638815 687 ntTSL 5 BASIC5.72□□□□□ -1.49
FOXA1P55317 UGP2-232ENST00000640075 567 ntTSL 5 BASIC5.72□□□□□ -1.49
FOXA1P55317 PSG10P-201ENST00000501199 1500 ntBASIC5.72□□□□□ -1.49
FOXA1P55317 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
FOXA1P55317 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC5.72□□□□□ -1.49
FOXA1P55317 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
FOXA1P55317 TCF12-205ENST00000537840 1598 ntTSL 2 BASIC5.72□□□□□ -1.49
FOXA1P55317 AC027279.4-201ENST00000624371 2072 ntBASIC5.71□□□□□ -1.49
FOXA1P55317 CPS1-IT1-201ENST00000628368 2306 ntBASIC5.71□□□□□ -1.49
FOXA1P55317 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC5.71□□□□□ -1.49
FOXA1P55317 MFSD8-239ENST00000641590 2479 ntBASIC5.71□□□□□ -1.49
FOXA1P55317 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.49
FOXA1P55317 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC5.71□□□□□ -1.5
FOXA1P55317 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC5.71□□□□□ -1.5
FOXA1P55317 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
FOXA1P55317 AL161901.1-201ENST00000624954 3425 ntBASIC5.71□□□□□ -1.5
FOXA1P55317 MTCO1P28-201ENST00000574177 1528 ntBASIC5.71□□□□□ -1.5
FOXA1P55317 SPINK5-203ENST00000398454 2915 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
FOXA1P55317 PSMA3-201ENST00000216455 970 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
FOXA1P55317 CRYBA1-201ENST00000225387 783 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
FOXA1P55317 RN7SKP77-201ENST00000363261 353 ntBASIC5.71□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 108.6 ms