Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 CYCSP17-201ENST00000407870 315 ntBASIC6.34□□□□□ -1.39
MSX2P35548 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC6.34□□□□□ -1.39
MSX2P35548 PPIAP30-201ENST00000415473 519 ntBASIC6.34□□□□□ -1.39
MSX2P35548 BX664727.1-201ENST00000416024 466 ntBASIC6.34□□□□□ -1.39
MSX2P35548 AL158050.1-201ENST00000416077 457 ntBASIC6.34□□□□□ -1.39
MSX2P35548 RPS24P7-201ENST00000416921 246 ntBASIC6.34□□□□□ -1.39
MSX2P35548 RPL12P43-201ENST00000420608 499 ntBASIC6.34□□□□□ -1.39
MSX2P35548 MTCO3P30-201ENST00000426425 670 ntBASIC6.34□□□□□ -1.39
MSX2P35548 USP9YP24-201ENST00000434374 697 ntBASIC6.34□□□□□ -1.39
MSX2P35548 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC6.34□□□□□ -1.39
MSX2P35548 MTCYBP29-201ENST00000436327 1006 ntBASIC6.34□□□□□ -1.39
MSX2P35548 AC114812.2-201ENST00000439336 663 ntTSL 2 BASIC6.34□□□□□ -1.39
MSX2P35548 USP9YP17-201ENST00000444617 696 ntBASIC6.34□□□□□ -1.39
MSX2P35548 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC6.34□□□□□ -1.39
MSX2P35548 AC004022.1-201ENST00000447766 1066 ntBASIC6.34□□□□□ -1.39
MSX2P35548 AL731661.2-201ENST00000448824 806 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
MSX2P35548 ZNF886P-201ENST00000450781 723 ntBASIC6.34□□□□□ -1.39
MSX2P35548 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
MSX2P35548 AC108463.2-201ENST00000451230 412 ntTSL 5 BASIC6.34□□□□□ -1.39
MSX2P35548 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
MSX2P35548 CT45A5-201ENST00000487941 1161 ntAPPRIS P1 TSL 2 BASIC6.34□□□□□ -1.39
MSX2P35548 AC079594.1-201ENST00000489757 331 ntBASIC6.34□□□□□ -1.39
MSX2P35548 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC6.34□□□□□ -1.39
MSX2P35548 RPL23AP80-201ENST00000495605 424 ntBASIC6.34□□□□□ -1.39
MSX2P35548 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC6.34□□□□□ -1.39
MSX2P35548 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC6.34□□□□□ -1.39
MSX2P35548 PCNAP1-201ENST00000505363 709 ntBASIC6.34□□□□□ -1.39
MSX2P35548 AC106798.1-202ENST00000506819 589 ntTSL 4 BASIC6.34□□□□□ -1.39
MSX2P35548 AC021193.1-201ENST00000511607 420 ntBASIC6.34□□□□□ -1.39
MSX2P35548 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC6.34□□□□□ -1.39
MSX2P35548 OR56A7P-201ENST00000524865 941 ntBASIC6.34□□□□□ -1.39
MSX2P35548 AP005436.1-201ENST00000531454 488 ntTSL 2 BASIC6.34□□□□□ -1.39
MSX2P35548 AC090115.2-201ENST00000548060 883 ntBASIC6.34□□□□□ -1.39
MSX2P35548 AL162511.1-201ENST00000556542 879 ntTSL 4 BASIC6.34□□□□□ -1.39
MSX2P35548 GS1-279B7.1-203ENST00000565520 609 ntTSL 5 BASIC6.34□□□□□ -1.39
MSX2P35548 AC124283.2-201ENST00000575085 318 ntTSL 3 BASIC6.34□□□□□ -1.39
MSX2P35548 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC6.34□□□□□ -1.39
MSX2P35548 AC084373.1-201ENST00000603311 235 ntBASIC6.34□□□□□ -1.39
MSX2P35548 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC6.34□□□□□ -1.39
MSX2P35548 FAM27E3-202ENST00000614611 340 ntBASIC6.34□□□□□ -1.39
MSX2P35548 AL356752.1-201ENST00000615844 593 ntBASIC6.34□□□□□ -1.39
MSX2P35548 AC004232.3-201ENST00000622977 525 ntBASIC6.34□□□□□ -1.39
MSX2P35548 AP001962.1-201ENST00000624114 559 ntBASIC6.34□□□□□ -1.39
MSX2P35548 LINC00251-201ENST00000627569 1055 ntTSL 3 BASIC6.34□□□□□ -1.39
MSX2P35548 LINC01646-202ENST00000634256 1107 ntTSL 5 BASIC6.34□□□□□ -1.39
MSX2P35548 BX649567.1-201ENST00000642071 1134 ntBASIC6.34□□□□□ -1.39
MSX2P35548 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
MSX2P35548 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC6.34□□□□□ -1.39
MSX2P35548 AC005225.5-201ENST00000623547 2225 ntBASIC6.34□□□□□ -1.39
MSX2P35548 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
MSX2P35548 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC6.34□□□□□ -1.4
MSX2P35548 TCP1P3-201ENST00000414406 1498 ntBASIC6.34□□□□□ -1.4
MSX2P35548 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC6.34□□□□□ -1.4
MSX2P35548 SPAG6-209ENST00000538630 2376 ntTSL 5 BASIC6.33□□□□□ -1.4
MSX2P35548 ZNF711-202ENST00000360700 4844 ntAPPRIS ALT2 TSL 1 (best) BASIC6.33□□□□□ -1.4
MSX2P35548 KCNJ1-203ENST00000392664 1674 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
MSX2P35548 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
MSX2P35548 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC6.33□□□□□ -1.4
MSX2P35548 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
MSX2P35548 RAP1GDS1-204ENST00000408900 1942 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
MSX2P35548 PIGN-217ENST00000591238 1622 ntTSL 5 BASIC6.33□□□□□ -1.4
MSX2P35548 LGI1-219ENST00000636155 1618 ntTSL 5 BASIC6.33□□□□□ -1.4
MSX2P35548 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC6.33□□□□□ -1.4
MSX2P35548 OR11H13P-201ENST00000359695 979 ntBASIC6.33□□□□□ -1.4
MSX2P35548 MIR16-2-201ENST00000362117 81 ntBASIC6.33□□□□□ -1.4
MSX2P35548 RNU4-81P-201ENST00000363561 144 ntBASIC6.33□□□□□ -1.4
MSX2P35548 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC6.33□□□□□ -1.4
MSX2P35548 RNU6-354P-201ENST00000383862 107 ntBASIC6.33□□□□□ -1.4
MSX2P35548 RNU6-610P-201ENST00000384264 107 ntBASIC6.33□□□□□ -1.4
MSX2P35548 RPL36A-202ENST00000392994 691 ntTSL 2 BASIC6.33□□□□□ -1.4
MSX2P35548 AL445238.1-204ENST00000400311 463 ntBASIC6.33□□□□□ -1.4
MSX2P35548 AL359715.1-201ENST00000404330 555 ntBASIC6.33□□□□□ -1.4
MSX2P35548 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC6.33□□□□□ -1.4
MSX2P35548 LSM5-203ENST00000409782 649 ntTSL 5 BASIC6.33□□□□□ -1.4
MSX2P35548 RNU2-5P-201ENST00000410533 180 ntBASIC6.33□□□□□ -1.4
MSX2P35548 MKX-AS1-201ENST00000412244 745 ntTSL 3 BASIC6.33□□□□□ -1.4
MSX2P35548 LIPT1P1-201ENST00000415870 1186 ntBASIC6.33□□□□□ -1.4
MSX2P35548 VDAC1P10-201ENST00000416715 891 ntBASIC6.33□□□□□ -1.4
MSX2P35548 SLC4A1APP1-201ENST00000419995 602 ntBASIC6.33□□□□□ -1.4
MSX2P35548 AC090960.1-201ENST00000421072 306 ntBASIC6.33□□□□□ -1.4
MSX2P35548 RPL34P27-201ENST00000428810 349 ntBASIC6.33□□□□□ -1.4
MSX2P35548 LINC01522-201ENST00000428999 429 ntTSL 2 BASIC6.33□□□□□ -1.4
MSX2P35548 RPL5P2-201ENST00000429598 854 ntBASIC6.33□□□□□ -1.4
MSX2P35548 PRPS1P2-201ENST00000430496 937 ntBASIC6.33□□□□□ -1.4
MSX2P35548 AL049646.2-201ENST00000436848 258 ntTSL 2 BASIC6.33□□□□□ -1.4
MSX2P35548 MTND4P6-201ENST00000438297 472 ntBASIC6.33□□□□□ -1.4
MSX2P35548 GSTA7P-201ENST00000438425 448 ntBASIC6.33□□□□□ -1.4
MSX2P35548 ZNF138-205ENST00000440155 1066 ntAPPRIS P3 TSL 2 BASIC6.33□□□□□ -1.4
MSX2P35548 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC6.33□□□□□ -1.4
MSX2P35548 AL122008.4-201ENST00000446433 388 ntTSL 3 BASIC6.33□□□□□ -1.4
MSX2P35548 NEURL1-AS1-201ENST00000447820 439 ntTSL 2 BASIC6.33□□□□□ -1.4
MSX2P35548 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC6.33□□□□□ -1.4
MSX2P35548 CADM2-AS2-201ENST00000467225 768 ntTSL 5 BASIC6.33□□□□□ -1.4
MSX2P35548 RPS2P25-201ENST00000467247 580 ntBASIC6.33□□□□□ -1.4
MSX2P35548 RPL7AP56-201ENST00000476420 791 ntBASIC6.33□□□□□ -1.4
MSX2P35548 AL591122.1-201ENST00000487348 492 ntBASIC6.33□□□□□ -1.4
MSX2P35548 AC112518.2-201ENST00000508565 425 ntBASIC6.33□□□□□ -1.4
MSX2P35548 OSTC-204ENST00000512478 663 ntTSL 5 BASIC6.33□□□□□ -1.4
MSX2P35548 AC097537.1-201ENST00000514864 1213 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
MSX2P35548 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 72.2 ms