Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC7.62□□□□□ -1.19
SHANK3Q9BYB0 LINC00921-201ENST00000572123 243 ntTSL 5 BASIC7.62□□□□□ -1.19
SHANK3Q9BYB0 MIR4330-201ENST00000579077 105 ntBASIC7.62□□□□□ -1.19
SHANK3Q9BYB0 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC7.62□□□□□ -1.19
SHANK3Q9BYB0 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC7.62□□□□□ -1.19
SHANK3Q9BYB0 AL512329.2-201ENST00000607350 548 ntBASIC7.62□□□□□ -1.19
SHANK3Q9BYB0 OR7E25P-202ENST00000641088 5937 ntBASIC7.62□□□□□ -1.19
SHANK3Q9BYB0 HMGB1-203ENST00000341423 5485 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
SHANK3Q9BYB0 CACNA2D3-212ENST00000620722 3296 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
SHANK3Q9BYB0 CTAGE11P-201ENST00000451540 2353 ntBASIC7.62□□□□□ -1.19
SHANK3Q9BYB0 SOX5-205ENST00000451604 4261 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
SHANK3Q9BYB0 FGD4-202ENST00000427716 8242 ntAPPRIS P1 TSL 2 BASIC7.62□□□□□ -1.19
SHANK3Q9BYB0 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
SHANK3Q9BYB0 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC7.62□□□□□ -1.19
SHANK3Q9BYB0 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC7.62□□□□□ -1.19
SHANK3Q9BYB0 ARNTL2-207ENST00000542388 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC7.62□□□□□ -1.19
SHANK3Q9BYB0 CNTNAP4-206ENST00000478060 3708 ntTSL 5 BASIC7.62□□□□□ -1.19
SHANK3Q9BYB0 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC7.61□□□□□ -1.19
SHANK3Q9BYB0 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC7.61□□□□□ -1.19
SHANK3Q9BYB0 B3GALT1-201ENST00000392690 5094 ntAPPRIS P1 BASIC7.61□□□□□ -1.19
SHANK3Q9BYB0 AC253576.1-201ENST00000511645 1156 ntBASIC7.61□□□□□ -1.19
SHANK3Q9BYB0 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC7.61□□□□□ -1.19
SHANK3Q9BYB0 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC7.61□□□□□ -1.19
SHANK3Q9BYB0 AC104996.1-201ENST00000583250 591 ntTSL 5 BASIC7.61□□□□□ -1.19
SHANK3Q9BYB0 AC245389.2-201ENST00000616023 576 ntBASIC7.61□□□□□ -1.19
SHANK3Q9BYB0 AC242843.1-201ENST00000618702 573 ntBASIC7.61□□□□□ -1.19
SHANK3Q9BYB0 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC7.61□□□□□ -1.19
SHANK3Q9BYB0 TULP4-202ENST00000367097 11295 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
SHANK3Q9BYB0 ZNF138-204ENST00000437743 2574 ntAPPRIS ALT2 TSL 1 (best) BASIC7.61□□□□□ -1.19
SHANK3Q9BYB0 EBLN2-201ENST00000533473 1679 ntAPPRIS P1 BASIC7.61□□□□□ -1.19
SHANK3Q9BYB0 RNF146-215ENST00000616343 2077 ntAPPRIS ALT1 TSL 5 BASIC7.61□□□□□ -1.19
SHANK3Q9BYB0 AL133243.4-201ENST00000623116 3109 ntBASIC7.61□□□□□ -1.19
SHANK3Q9BYB0 ERC1-202ENST00000355446 5796 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
SHANK3Q9BYB0 KIF13A-203ENST00000378814 6924 ntAPPRIS ALT2 TSL 1 (best) BASIC7.61□□□□□ -1.19
SHANK3Q9BYB0 TNC-202ENST00000350763 7641 ntAPPRIS P2 TSL 1 (best) BASIC7.61□□□□□ -1.19
SHANK3Q9BYB0 RGS4-203ENST00000367909 3200 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
SHANK3Q9BYB0 EYA3-203ENST00000373871 6085 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
SHANK3Q9BYB0 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC7.61□□□□□ -1.19
SHANK3Q9BYB0 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
SHANK3Q9BYB0 KCNJ15-220ENST00000612702 3046 ntAPPRIS P1 TSL 4 BASIC7.61□□□□□ -1.19
SHANK3Q9BYB0 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC7.61□□□□□ -1.19
SHANK3Q9BYB0 MTIF2-201ENST00000263629 2528 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
SHANK3Q9BYB0 TAS2R8-201ENST00000240615 1243 ntAPPRIS P1 BASIC7.61□□□□□ -1.19
SHANK3Q9BYB0 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC7.61□□□□□ -1.19
SHANK3Q9BYB0 HIVEP3-202ENST00000372584 12319 ntAPPRIS ALT2 TSL 1 (best) BASIC7.61□□□□□ -1.19
SHANK3Q9BYB0 MIR130A-201ENST00000385274 89 ntBASIC7.61□□□□□ -1.19
SHANK3Q9BYB0 AL589647.1-201ENST00000402485 466 ntBASIC7.61□□□□□ -1.19
SHANK3Q9BYB0 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC7.61□□□□□ -1.19
SHANK3Q9BYB0 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC7.61□□□□□ -1.19
SHANK3Q9BYB0 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
SHANK3Q9BYB0 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC7.61□□□□□ -1.19
SHANK3Q9BYB0 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC7.61□□□□□ -1.19
SHANK3Q9BYB0 AC027334.1-201ENST00000603257 310 ntBASIC7.61□□□□□ -1.19
SHANK3Q9BYB0 NAA60-237ENST00000615865 326 ntTSL 5 BASIC7.61□□□□□ -1.19
SHANK3Q9BYB0 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC7.61□□□□□ -1.19
SHANK3Q9BYB0 CDY5P-201ENST00000411487 1580 ntBASIC7.6□□□□□ -1.19
SHANK3Q9BYB0 CDY9P-201ENST00000451397 1580 ntBASIC7.6□□□□□ -1.19
SHANK3Q9BYB0 AC087477.2-202ENST00000558499 4856 ntTSL 4 BASIC7.6□□□□□ -1.19
SHANK3Q9BYB0 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC7.6□□□□□ -1.19
SHANK3Q9BYB0 AC005618.1-201ENST00000606901 3148 ntBASIC7.6□□□□□ -1.19
SHANK3Q9BYB0 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
SHANK3Q9BYB0 BRD7-202ENST00000394689 2145 ntAPPRIS ALT1 TSL 1 (best) BASIC7.6□□□□□ -1.19
SHANK3Q9BYB0 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
SHANK3Q9BYB0 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC7.6□□□□□ -1.19
SHANK3Q9BYB0 VTA1-202ENST00000367630 7028 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
SHANK3Q9BYB0 MME-203ENST00000460393 5622 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
SHANK3Q9BYB0 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC7.6□□□□□ -1.19
SHANK3Q9BYB0 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
SHANK3Q9BYB0 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC7.6□□□□□ -1.19
SHANK3Q9BYB0 AL772161.1-201ENST00000439130 476 ntBASIC7.6□□□□□ -1.19
SHANK3Q9BYB0 AL022319.1-201ENST00000458183 1167 ntBASIC7.6□□□□□ -1.19
SHANK3Q9BYB0 AC073581.1-201ENST00000519036 575 ntBASIC7.6□□□□□ -1.19
SHANK3Q9BYB0 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC7.6□□□□□ -1.19
SHANK3Q9BYB0 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC7.6□□□□□ -1.19
SHANK3Q9BYB0 AC005832.1-201ENST00000544380 572 ntTSL 4 BASIC7.6□□□□□ -1.19
SHANK3Q9BYB0 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC7.6□□□□□ -1.19
SHANK3Q9BYB0 AL118522.2-201ENST00000616045 615 ntBASIC7.6□□□□□ -1.19
SHANK3Q9BYB0 METTL15-211ENST00000634762 718 ntTSL 5 BASIC7.6□□□□□ -1.19
SHANK3Q9BYB0 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC7.6□□□□□ -1.19
SHANK3Q9BYB0 LRRC37A6P-202ENST00000448648 5444 ntBASIC7.6□□□□□ -1.19
SHANK3Q9BYB0 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
SHANK3Q9BYB0 MCFD2-202ENST00000409105 4210 ntAPPRIS P1 TSL 5 BASIC7.6□□□□□ -1.19
SHANK3Q9BYB0 ZNF720-202ENST00000398696 1339 ntTSL 4 BASIC7.6□□□□□ -1.19
SHANK3Q9BYB0 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC7.6□□□□□ -1.19
SHANK3Q9BYB0 INPP5F-208ENST00000637174 3168 ntTSL 5 BASIC7.6□□□□□ -1.19
SHANK3Q9BYB0 LINC02044-201ENST00000490139 2502 ntTSL 2 BASIC7.6□□□□□ -1.19
SHANK3Q9BYB0 AC097478.1-206ENST00000513572 2010 ntTSL 3 BASIC7.59□□□□□ -1.19
SHANK3Q9BYB0 DNAH10-201ENST00000409039 14473 ntAPPRIS ALT2 TSL 5 BASIC7.59□□□□□ -1.19
SHANK3Q9BYB0 BICC1-202ENST00000373886 5475 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
SHANK3Q9BYB0 IL1RAP-212ENST00000443369 2760 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
SHANK3Q9BYB0 PAK5-201ENST00000353224 4500 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
SHANK3Q9BYB0 TMEM68-219ENST00000617977 4512 ntTSL 5 BASIC7.59□□□□□ -1.19
SHANK3Q9BYB0 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC7.59□□□□□ -1.19
SHANK3Q9BYB0 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC7.59□□□□□ -1.19
SHANK3Q9BYB0 TBC1D30-204ENST00000542120 7433 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
SHANK3Q9BYB0 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC7.59□□□□□ -1.19
SHANK3Q9BYB0 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC7.59□□□□□ -1.19
SHANK3Q9BYB0 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC7.59□□□□□ -1.19
SHANK3Q9BYB0 CYCSP6-201ENST00000434498 302 ntBASIC7.59□□□□□ -1.19
SHANK3Q9BYB0 AC009948.1-206ENST00000436616 1020 ntTSL 3 BASIC7.59□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 91.2 ms