Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RN7SL860P-201ENST00000473738 223 ntBASIC6.22□□□□□ -1.41
COL28A1Q2UY09 RPL7AP23-201ENST00000482625 776 ntBASIC6.22□□□□□ -1.41
COL28A1Q2UY09 AC245088.1-201ENST00000486508 384 ntTSL 3 BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 RPL32P9-201ENST00000487963 407 ntBASIC6.22□□□□□ -1.41
COL28A1Q2UY09 AC117386.2-203ENST00000489690 557 ntTSL 3 BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 ATP5LP3-201ENST00000514223 304 ntBASIC6.22□□□□□ -1.41
COL28A1Q2UY09 AC022915.3-201ENST00000518620 594 ntTSL 4 BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 IGKV3D-25-201ENST00000519599 235 ntBASIC6.22□□□□□ -1.41
COL28A1Q2UY09 AC103718.1-201ENST00000522667 683 ntTSL 3 BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 OR11H12-201ENST00000550708 1085 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 SNRPGP1-201ENST00000553864 222 ntBASIC6.22□□□□□ -1.41
COL28A1Q2UY09 AC007346.1-201ENST00000569208 867 ntBASIC6.22□□□□□ -1.41
COL28A1Q2UY09 SNORD95-201ENST00000579879 68 ntBASIC6.22□□□□□ -1.41
COL28A1Q2UY09 MRO-208ENST00000588444 866 ntTSL 3 BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 AC009237.12-201ENST00000604755 742 ntBASIC6.22□□□□□ -1.41
COL28A1Q2UY09 LINC02362-201ENST00000608785 516 ntTSL 3 BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 LINC02362-202ENST00000610683 724 ntTSL 5 BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 CKLF-CMTM1-206ENST00000616804 678 ntAPPRIS ALT2 TSL 2 BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 Metazoa_SRP.129-201ENST00000619776 251 ntBASIC6.22□□□□□ -1.41
COL28A1Q2UY09 AC131009.3-201ENST00000621809 287 ntBASIC6.22□□□□□ -1.41
COL28A1Q2UY09 AL118508.4-201ENST00000624142 1176 ntBASIC6.22□□□□□ -1.41
COL28A1Q2UY09 AL450990.1-201ENST00000632868 582 ntTSL 4 BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 C11orf72-201ENST00000333139 2431 ntTSL 2 BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 OR2G6-202ENST00000641501 5840 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 RBPJP7-201ENST00000442803 1447 ntBASIC6.22□□□□□ -1.41
COL28A1Q2UY09 RBPJP5-201ENST00000449433 1447 ntBASIC6.22□□□□□ -1.41
COL28A1Q2UY09 CDH7-201ENST00000323011 2728 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 AC010329.1-201ENST00000593903 8328 ntBASIC6.22□□□□□ -1.41
COL28A1Q2UY09 LRRC37B-201ENST00000327564 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 IL1RL1-202ENST00000311734 3994 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 ZNF559-212ENST00000592896 1488 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
COL28A1Q2UY09 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC6.21□□□□□ -1.41
COL28A1Q2UY09 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC6.21□□□□□ -1.41
COL28A1Q2UY09 CASC19-246ENST00000641625 1606 ntBASIC6.21□□□□□ -1.41
COL28A1Q2UY09 GYPA-214ENST00000641688 1764 ntAPPRIS ALT2 BASIC6.21□□□□□ -1.41
COL28A1Q2UY09 ECHDC1-210ENST00000454859 2341 ntAPPRIS P3 TSL 1 (best) BASIC6.21□□□□□ -1.41
COL28A1Q2UY09 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC6.21□□□□□ -1.41
COL28A1Q2UY09 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC6.21□□□□□ -1.41
COL28A1Q2UY09 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC6.21□□□□□ -1.41
COL28A1Q2UY09 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
COL28A1Q2UY09 CMAHP-202ENST00000377993 1681 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
COL28A1Q2UY09 DAPL1-201ENST00000309950 552 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
COL28A1Q2UY09 Y_RNA.62-201ENST00000362840 99 ntBASIC6.21□□□□□ -1.42
COL28A1Q2UY09 SNORA51.9-201ENST00000384295 124 ntBASIC6.21□□□□□ -1.42
COL28A1Q2UY09 AL136116.2-201ENST00000404020 785 ntBASIC6.21□□□□□ -1.42
COL28A1Q2UY09 DHFRP5-201ENST00000406944 564 ntBASIC6.21□□□□□ -1.42
COL28A1Q2UY09 AL139805.1-201ENST00000407837 289 ntBASIC6.21□□□□□ -1.42
COL28A1Q2UY09 DAPL1-203ENST00000409042 544 ntTSL 4 BASIC6.21□□□□□ -1.42
COL28A1Q2UY09 LINC01497-201ENST00000420427 665 ntTSL 3 BASIC6.21□□□□□ -1.42
COL28A1Q2UY09 PAICSP2-201ENST00000429118 1150 ntBASIC6.21□□□□□ -1.42
COL28A1Q2UY09 BRWD1-IT1-201ENST00000435608 489 ntTSL 3 BASIC6.21□□□□□ -1.42
COL28A1Q2UY09 KRTAP2-5P-201ENST00000446109 396 ntBASIC6.21□□□□□ -1.42
COL28A1Q2UY09 XXYLT1-AS2-202ENST00000447975 784 ntTSL 2 BASIC6.21□□□□□ -1.42
COL28A1Q2UY09 RPL26P30-201ENST00000453533 435 ntBASIC6.21□□□□□ -1.42
COL28A1Q2UY09 AL356390.1-201ENST00000455684 397 ntBASIC6.21□□□□□ -1.42
COL28A1Q2UY09 AC084211.1-201ENST00000473893 328 ntTSL 2 BASIC6.21□□□□□ -1.42
COL28A1Q2UY09 ARPP21-231ENST00000474696 572 ntTSL 2 BASIC6.21□□□□□ -1.42
COL28A1Q2UY09 SNHG12-207ENST00000475441 444 ntTSL 3 BASIC6.21□□□□□ -1.42
COL28A1Q2UY09 RPL24-206ENST00000495401 478 ntTSL 2 BASIC6.21□□□□□ -1.42
COL28A1Q2UY09 AL136038.1-201ENST00000497246 351 ntBASIC6.21□□□□□ -1.42
COL28A1Q2UY09 AC106864.2-201ENST00000505632 740 ntTSL 2 BASIC6.21□□□□□ -1.42
COL28A1Q2UY09 ERVH-1-201ENST00000507666 639 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
COL28A1Q2UY09 ST13P12-201ENST00000508958 1094 ntBASIC6.21□□□□□ -1.42
COL28A1Q2UY09 AC083923.2-202ENST00000517773 498 ntTSL 3 BASIC6.21□□□□□ -1.42
COL28A1Q2UY09 AC090572.3-201ENST00000519041 804 ntTSL 3 BASIC6.21□□□□□ -1.42
COL28A1Q2UY09 AC087272.1-201ENST00000523624 533 ntBASIC6.21□□□□□ -1.42
COL28A1Q2UY09 AC010547.6-201ENST00000571789 193 ntBASIC6.21□□□□□ -1.42
COL28A1Q2UY09 AC091768.1-201ENST00000609258 930 ntBASIC6.21□□□□□ -1.42
COL28A1Q2UY09 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC6.21□□□□□ -1.42
COL28A1Q2UY09 AC021422.1-201ENST00000621212 473 ntBASIC6.21□□□□□ -1.42
COL28A1Q2UY09 CCL14-204ENST00000622526 472 ntTSL 3 BASIC6.21□□□□□ -1.42
COL28A1Q2UY09 AL078581.3-201ENST00000627304 744 ntTSL 5 BASIC6.21□□□□□ -1.42
COL28A1Q2UY09 TTC41P-205ENST00000551270 3963 ntBASIC6.21□□□□□ -1.42
COL28A1Q2UY09 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL28A1Q2UY09 ROR1-AS1-201ENST00000412349 1574 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
COL28A1Q2UY09 VTCN1-207ENST00000539893 2719 ntTSL 2 BASIC6.21□□□□□ -1.42
COL28A1Q2UY09 SCRN1-202ENST00000409497 1732 ntAPPRIS P1 TSL 2 BASIC6.21□□□□□ -1.42
COL28A1Q2UY09 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC6.21□□□□□ -1.42
COL28A1Q2UY09 ALS2CR12-203ENST00000405148 2013 ntAPPRIS P3 TSL 5 BASIC6.21□□□□□ -1.42
COL28A1Q2UY09 ZNF329-203ENST00000597186 3930 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.42
COL28A1Q2UY09 AL359694.2-201ENST00000567753 1615 ntBASIC6.21□□□□□ -1.42
COL28A1Q2UY09 AMY1B-202ENST00000370080 1787 ntAPPRIS P1 TSL 2 BASIC6.21□□□□□ -1.42
COL28A1Q2UY09 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC6.21□□□□□ -1.42
COL28A1Q2UY09 AC006600.2-201ENST00000624834 2506 ntBASIC6.21□□□□□ -1.42
COL28A1Q2UY09 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL28A1Q2UY09 OR8B8-202ENST00000642064 3914 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
COL28A1Q2UY09 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL28A1Q2UY09 EPB41L2-209ENST00000525193 2121 ntTSL 5 BASIC6.2□□□□□ -1.42
COL28A1Q2UY09 DCSTAMP-201ENST00000297581 1953 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL28A1Q2UY09 LRRC39-202ENST00000370137 1396 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 112.8 ms