Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC010325.3-201ENST00000641084 394 ntBASIC5.76□□□□□ -1.49
FOXA1P55317 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
FOXA1P55317 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC5.76□□□□□ -1.49
FOXA1P55317 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC5.76□□□□□ -1.49
FOXA1P55317 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
FOXA1P55317 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
FOXA1P55317 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
FOXA1P55317 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
FOXA1P55317 KCNAB1-212ENST00000490337 3122 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
FOXA1P55317 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
FOXA1P55317 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC5.76□□□□□ -1.49
FOXA1P55317 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
FOXA1P55317 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC5.75□□□□□ -1.49
FOXA1P55317 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC5.75□□□□□ -1.49
FOXA1P55317 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC5.75□□□□□ -1.49
FOXA1P55317 LINC01362-202ENST00000452901 1712 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
FOXA1P55317 MIR188-201ENST00000385034 86 ntBASIC5.75□□□□□ -1.49
FOXA1P55317 RPL12P12-201ENST00000424633 501 ntBASIC5.75□□□□□ -1.49
FOXA1P55317 SCP2-207ENST00000435345 894 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
FOXA1P55317 AL513348.1-201ENST00000435554 440 ntTSL 3 BASIC5.75□□□□□ -1.49
FOXA1P55317 AC023141.3-201ENST00000436698 278 ntBASIC5.75□□□□□ -1.49
FOXA1P55317 RPSAP40-201ENST00000442343 891 ntBASIC5.75□□□□□ -1.49
FOXA1P55317 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC5.75□□□□□ -1.49
FOXA1P55317 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC5.75□□□□□ -1.49
FOXA1P55317 SUMO2P10-201ENST00000452006 288 ntBASIC5.75□□□□□ -1.49
FOXA1P55317 RPL12P39-201ENST00000455456 496 ntBASIC5.75□□□□□ -1.49
FOXA1P55317 PFN1P6-201ENST00000476786 399 ntBASIC5.75□□□□□ -1.49
FOXA1P55317 CPHL1P-204ENST00000482639 584 ntTSL 5 BASIC5.75□□□□□ -1.49
FOXA1P55317 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC5.75□□□□□ -1.49
FOXA1P55317 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC5.75□□□□□ -1.49
FOXA1P55317 MRPS21P8-201ENST00000569196 235 ntBASIC5.75□□□□□ -1.49
FOXA1P55317 AC012594.1-252ENST00000595011 876 ntTSL 5 BASIC5.75□□□□□ -1.49
FOXA1P55317 ZNF738-205ENST00000597810 747 ntAPPRIS ALT2 TSL 3 BASIC5.75□□□□□ -1.49
FOXA1P55317 MIR6774-201ENST00000614651 70 ntBASIC5.75□□□□□ -1.49
FOXA1P55317 Metazoa_SRP.38-201ENST00000615981 254 ntBASIC5.75□□□□□ -1.49
FOXA1P55317 AL138693.1-201ENST00000622219 129 ntBASIC5.75□□□□□ -1.49
FOXA1P55317 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC5.75□□□□□ -1.49
FOXA1P55317 AC007603.3-201ENST00000636915 979 ntBASIC5.75□□□□□ -1.49
FOXA1P55317 AC099654.15-201ENST00000639802 509 ntBASIC5.75□□□□□ -1.49
FOXA1P55317 5S_rRNA.29-201ENST00000641250 107 ntBASIC5.75□□□□□ -1.49
FOXA1P55317 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC5.75□□□□□ -1.49
FOXA1P55317 RRN3-202ENST00000327307 2039 ntTSL 2 BASIC5.75□□□□□ -1.49
FOXA1P55317 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
FOXA1P55317 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC5.75□□□□□ -1.49
FOXA1P55317 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
FOXA1P55317 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC5.75□□□□□ -1.49
FOXA1P55317 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
FOXA1P55317 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC5.75□□□□□ -1.49
FOXA1P55317 SAMD3-204ENST00000439090 2093 ntAPPRIS P1 TSL 2 BASIC5.75□□□□□ -1.49
FOXA1P55317 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
FOXA1P55317 ING3-204ENST00000431467 1447 ntTSL 2 BASIC5.74□□□□□ -1.49
FOXA1P55317 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
FOXA1P55317 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC5.74□□□□□ -1.49
FOXA1P55317 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
FOXA1P55317 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
FOXA1P55317 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
FOXA1P55317 RNU1-134P-201ENST00000362935 165 ntBASIC5.74□□□□□ -1.49
FOXA1P55317 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
FOXA1P55317 GNAT3-201ENST00000398291 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
FOXA1P55317 TOMM6-202ENST00000398884 637 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
FOXA1P55317 RN7SKP38-201ENST00000410782 309 ntBASIC5.74□□□□□ -1.49
FOXA1P55317 AL512622.1-201ENST00000414106 481 ntTSL 3 BASIC5.74□□□□□ -1.49
FOXA1P55317 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC5.74□□□□□ -1.49
FOXA1P55317 AL663074.2-201ENST00000440621 479 ntBASIC5.74□□□□□ -1.49
FOXA1P55317 RPS7P3-201ENST00000443360 580 ntBASIC5.74□□□□□ -1.49
FOXA1P55317 RPL5P10-201ENST00000445207 894 ntBASIC5.74□□□□□ -1.49
FOXA1P55317 LINC01370-202ENST00000445606 731 ntTSL 5 BASIC5.74□□□□□ -1.49
FOXA1P55317 SEPHS1P4-201ENST00000446112 1176 ntBASIC5.74□□□□□ -1.49
FOXA1P55317 AC004890.1-201ENST00000461005 181 ntBASIC5.74□□□□□ -1.49
FOXA1P55317 OR7E22P-201ENST00000478335 1035 ntBASIC5.74□□□□□ -1.49
FOXA1P55317 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC5.74□□□□□ -1.49
FOXA1P55317 AC093535.1-203ENST00000512500 730 ntTSL 3 BASIC5.74□□□□□ -1.49
FOXA1P55317 AC112242.1-201ENST00000515805 406 ntTSL 3 BASIC5.74□□□□□ -1.49
FOXA1P55317 MIR2117-201ENST00000516780 80 ntBASIC5.74□□□□□ -1.49
FOXA1P55317 AP003100.1-201ENST00000524772 832 ntTSL 3 BASIC5.74□□□□□ -1.49
FOXA1P55317 AL137224.1-201ENST00000527984 389 ntTSL 2 BASIC5.74□□□□□ -1.49
FOXA1P55317 AP002370.2-201ENST00000531424 545 ntTSL 3 BASIC5.74□□□□□ -1.49
FOXA1P55317 NPIPB14P-203ENST00000532298 987 ntBASIC5.74□□□□□ -1.49
FOXA1P55317 AC137800.1-201ENST00000562976 573 ntTSL 4 BASIC5.74□□□□□ -1.49
FOXA1P55317 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC5.74□□□□□ -1.49
FOXA1P55317 AC090826.1-203ENST00000569235 490 ntBASIC5.74□□□□□ -1.49
FOXA1P55317 AP003774.2-201ENST00000569737 558 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
FOXA1P55317 AC060780.2-201ENST00000589047 198 ntBASIC5.74□□□□□ -1.49
FOXA1P55317 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC5.74□□□□□ -1.49
FOXA1P55317 AC006115.2-201ENST00000596823 202 ntBASIC5.74□□□□□ -1.49
FOXA1P55317 AC012370.2-201ENST00000597541 1080 ntTSL 5 BASIC5.74□□□□□ -1.49
FOXA1P55317 AC073333.2-201ENST00000603589 769 ntBASIC5.74□□□□□ -1.49
FOXA1P55317 NQO2-209ENST00000606474 470 ntTSL 3 BASIC5.74□□□□□ -1.49
FOXA1P55317 AL135999.3-201ENST00000610501 812 ntBASIC5.74□□□□□ -1.49
FOXA1P55317 AC069542.2-201ENST00000624816 216 ntBASIC5.74□□□□□ -1.49
FOXA1P55317 RBMY1HP-201ENST00000382759 1389 ntBASIC5.74□□□□□ -1.49
FOXA1P55317 TMPRSS11F-201ENST00000356291 2088 ntAPPRIS P1 TSL 2 BASIC5.74□□□□□ -1.49
FOXA1P55317 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC5.74□□□□□ -1.49
FOXA1P55317 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC5.74□□□□□ -1.49
FOXA1P55317 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.49
FOXA1P55317 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC5.74□□□□□ -1.49
FOXA1P55317 AC004076.2-201ENST00000620532 3323 ntBASIC5.74□□□□□ -1.49
FOXA1P55317 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
FOXA1P55317 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
FOXA1P55317 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 136.8 ms