Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 OR52E7P-201ENST00000452394 933 ntBASIC7.23□□□□□ -1.25
SMARCA1P28370 CTSLP6-201ENST00000458273 1002 ntBASIC7.23□□□□□ -1.25
SMARCA1P28370 MARK2P8-201ENST00000476069 952 ntBASIC7.23□□□□□ -1.25
SMARCA1P28370 RPL34P33-201ENST00000486062 334 ntBASIC7.23□□□□□ -1.25
SMARCA1P28370 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
SMARCA1P28370 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC7.23□□□□□ -1.25
SMARCA1P28370 RNA5SP473-201ENST00000516402 125 ntBASIC7.23□□□□□ -1.25
SMARCA1P28370 RNA5SP441-201ENST00000516809 88 ntBASIC7.23□□□□□ -1.25
SMARCA1P28370 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC7.23□□□□□ -1.25
SMARCA1P28370 NPIPB14P-203ENST00000532298 987 ntBASIC7.23□□□□□ -1.25
SMARCA1P28370 AC025423.2-201ENST00000537570 439 ntBASIC7.23□□□□□ -1.25
SMARCA1P28370 NPIPB1P-201ENST00000547442 1129 ntTSL 5 BASIC7.23□□□□□ -1.25
SMARCA1P28370 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC7.23□□□□□ -1.25
SMARCA1P28370 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC7.23□□□□□ -1.25
SMARCA1P28370 MIR3154-201ENST00000577829 84 ntBASIC7.23□□□□□ -1.25
SMARCA1P28370 NPIPB1P-202ENST00000588786 828 ntBASIC7.23□□□□□ -1.25
SMARCA1P28370 AC020915.5-201ENST00000596836 964 ntBASIC7.23□□□□□ -1.25
SMARCA1P28370 LINC01435-212ENST00000601212 742 ntTSL 5 BASIC7.23□□□□□ -1.25
SMARCA1P28370 AC096586.2-201ENST00000610260 441 ntBASIC7.23□□□□□ -1.25
SMARCA1P28370 AL683826.1-201ENST00000624104 627 ntBASIC7.23□□□□□ -1.25
SMARCA1P28370 CSDE1-205ENST00000438362 4167 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
SMARCA1P28370 AC105749.1-201ENST00000631338 2008 ntBASIC7.23□□□□□ -1.25
SMARCA1P28370 NCOA2-201ENST00000452400 8447 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
SMARCA1P28370 ZNF229-203ENST00000613197 4835 ntAPPRIS ALT2 TSL 1 (best) BASIC7.23□□□□□ -1.25
SMARCA1P28370 LINC00284-201ENST00000423211 3208 ntTSL 2 BASIC7.23□□□□□ -1.25
SMARCA1P28370 P2RY14-202ENST00000424796 1780 ntAPPRIS P1 TSL 2 BASIC7.23□□□□□ -1.25
SMARCA1P28370 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
SMARCA1P28370 SH3BGRL-201ENST00000373212 1923 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
SMARCA1P28370 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
SMARCA1P28370 FAM160A1-203ENST00000505231 4156 ntAPPRIS P1 TSL 5 BASIC7.23□□□□□ -1.25
SMARCA1P28370 MYO5A-209ENST00000553916 5989 ntTSL 5 BASIC7.23□□□□□ -1.25
SMARCA1P28370 MUSK-206ENST00000416899 3344 ntTSL 5 BASIC7.22□□□□□ -1.25
SMARCA1P28370 LRRC37B-202ENST00000341671 3025 ntAPPRIS P3 TSL 1 (best) BASIC7.22□□□□□ -1.25
SMARCA1P28370 ADNP-202ENST00000371602 6115 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
SMARCA1P28370 KIAA2012-205ENST00000541917 3543 ntAPPRIS P2 TSL 5 BASIC7.22□□□□□ -1.25
SMARCA1P28370 TTLL5-217ENST00000556893 3071 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
SMARCA1P28370 N4BP2-201ENST00000261435 9744 ntAPPRIS P1 TSL 5 BASIC7.22□□□□□ -1.25
SMARCA1P28370 CACNA1E-209ENST00000621551 14886 ntAPPRIS ALT2 TSL 5 BASIC7.22□□□□□ -1.25
SMARCA1P28370 DAZ2-202ENST00000382306 3781 ntAPPRIS ALT2 TSL 5 BASIC7.22□□□□□ -1.25
SMARCA1P28370 AP000547.3-204ENST00000588548 2523 ntBASIC7.22□□□□□ -1.25
SMARCA1P28370 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC7.22□□□□□ -1.25
SMARCA1P28370 RN7SKP187-201ENST00000365536 330 ntBASIC7.22□□□□□ -1.25
SMARCA1P28370 RN7SKP144-201ENST00000411108 279 ntBASIC7.22□□□□□ -1.25
SMARCA1P28370 AL121885.3-201ENST00000422833 115 ntTSL 3 BASIC7.22□□□□□ -1.25
SMARCA1P28370 RPL7AP14-201ENST00000424041 802 ntBASIC7.22□□□□□ -1.25
SMARCA1P28370 CR848007.2-201ENST00000424918 787 ntBASIC7.22□□□□□ -1.25
SMARCA1P28370 AL590623.1-201ENST00000427864 105 ntBASIC7.22□□□□□ -1.25
SMARCA1P28370 ZEB2-AS1-203ENST00000428623 436 ntTSL 2 BASIC7.22□□□□□ -1.25
SMARCA1P28370 RPL17P35-201ENST00000432217 549 ntBASIC7.22□□□□□ -1.25
SMARCA1P28370 AL160004.1-201ENST00000434311 478 ntTSL 3 BASIC7.22□□□□□ -1.25
SMARCA1P28370 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC7.22□□□□□ -1.25
SMARCA1P28370 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC7.22□□□□□ -1.25
SMARCA1P28370 AC016908.1-201ENST00000442571 1219 ntBASIC7.22□□□□□ -1.25
SMARCA1P28370 AC007099.1-201ENST00000451622 1185 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
SMARCA1P28370 RN7SL168P-201ENST00000463821 279 ntBASIC7.22□□□□□ -1.25
SMARCA1P28370 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC7.22□□□□□ -1.25
SMARCA1P28370 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC7.22□□□□□ -1.25
SMARCA1P28370 AP002453.1-201ENST00000492327 668 ntBASIC7.22□□□□□ -1.25
SMARCA1P28370 OCIAD1-216ENST00000509122 1204 ntTSL 5 BASIC7.22□□□□□ -1.25
SMARCA1P28370 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC7.22□□□□□ -1.25
SMARCA1P28370 MGC32805-204ENST00000509993 783 ntTSL 2 BASIC7.22□□□□□ -1.25
SMARCA1P28370 SNORA26.10-201ENST00000516427 141 ntBASIC7.22□□□□□ -1.25
SMARCA1P28370 SNORA70.17-201ENST00000516449 133 ntBASIC7.22□□□□□ -1.25
SMARCA1P28370 EIF4A2P3-201ENST00000525903 1055 ntBASIC7.22□□□□□ -1.25
SMARCA1P28370 AC084855.1-201ENST00000528696 572 ntTSL 2 BASIC7.22□□□□□ -1.25
SMARCA1P28370 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC7.22□□□□□ -1.25
SMARCA1P28370 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC7.22□□□□□ -1.25
SMARCA1P28370 AC093525.4-201ENST00000562232 459 ntTSL 5 BASIC7.22□□□□□ -1.25
SMARCA1P28370 AC138907.7-201ENST00000568972 358 ntTSL 5 BASIC7.22□□□□□ -1.25
SMARCA1P28370 AP005136.2-201ENST00000583253 1049 ntBASIC7.22□□□□□ -1.25
SMARCA1P28370 AP001381.1-201ENST00000584109 534 ntTSL 5 BASIC7.22□□□□□ -1.25
SMARCA1P28370 APOC2-205ENST00000592257 444 ntTSL 3 BASIC7.22□□□□□ -1.25
SMARCA1P28370 BNIP3P39-201ENST00000601077 554 ntBASIC7.22□□□□□ -1.25
SMARCA1P28370 MIR7109-201ENST00000613748 65 ntBASIC7.22□□□□□ -1.25
SMARCA1P28370 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC7.22□□□□□ -1.25
SMARCA1P28370 AL590396.2-201ENST00000636511 1041 ntBASIC7.22□□□□□ -1.25
SMARCA1P28370 AC024651.2-201ENST00000562480 2098 ntBASIC7.22□□□□□ -1.25
SMARCA1P28370 BPESC1-201ENST00000418282 3522 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
SMARCA1P28370 ZBTB8B-201ENST00000609129 12834 ntAPPRIS P1 TSL 5 BASIC7.22□□□□□ -1.25
SMARCA1P28370 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
SMARCA1P28370 SNX18P3-202ENST00000565670 1750 ntBASIC7.22□□□□□ -1.25
SMARCA1P28370 G6PC-201ENST00000253801 3096 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
SMARCA1P28370 ZC3H11A-202ENST00000367210 5877 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
SMARCA1P28370 CLCN3-211ENST00000613795 5874 ntTSL 5 BASIC7.22□□□□□ -1.25
SMARCA1P28370 CEP152-201ENST00000325747 4986 ntAPPRIS ALT2 TSL 1 (best) BASIC7.22□□□□□ -1.25
SMARCA1P28370 FASTKD2-203ENST00000403094 2344 ntAPPRIS P1 TSL 5 BASIC7.22□□□□□ -1.25
SMARCA1P28370 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC7.22□□□□□ -1.25
SMARCA1P28370 IGF2R-201ENST00000356956 14044 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
SMARCA1P28370 AC010168.2-201ENST00000562691 5428 ntBASIC7.22□□□□□ -1.25
SMARCA1P28370 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC7.21□□□□□ -1.25
SMARCA1P28370 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC7.21□□□□□ -1.25
SMARCA1P28370 AC011416.1-201ENST00000514947 1732 ntBASIC7.21□□□□□ -1.25
SMARCA1P28370 ZNF735-201ENST00000429565 1570 ntAPPRIS P1 TSL 5 BASIC7.21□□□□□ -1.25
SMARCA1P28370 AC093010.2-202ENST00000493033 3023 ntTSL 2 BASIC7.21□□□□□ -1.25
SMARCA1P28370 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.25
SMARCA1P28370 TMEM67-205ENST00000453321 4651 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
SMARCA1P28370 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC7.21□□□□□ -1.26
SMARCA1P28370 LGSN-204ENST00000622415 1612 ntTSL 2 BASIC7.21□□□□□ -1.26
SMARCA1P28370 RNA5SP279-201ENST00000365513 117 ntBASIC7.21□□□□□ -1.26
SMARCA1P28370 RNU6-1176P-201ENST00000390955 107 ntBASIC7.21□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 119.5 ms