Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 CD52-201ENST00000374213 468 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
LMX1BO60663 AL451046.1-201ENST00000406097 534 ntBASIC5.52□□□□□ -1.53
LMX1BO60663 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC5.52□□□□□ -1.53
LMX1BO60663 PVALB-204ENST00000417718 569 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
LMX1BO60663 AL606534.4-201ENST00000427176 792 ntTSL 5 BASIC5.52□□□□□ -1.53
LMX1BO60663 AC005532.1-201ENST00000430266 471 ntTSL 5 BASIC5.52□□□□□ -1.53
LMX1BO60663 HTR3E-AS1-201ENST00000431427 515 ntTSL 4 BASIC5.52□□□□□ -1.53
LMX1BO60663 AC007679.3-201ENST00000434035 414 ntBASIC5.52□□□□□ -1.53
LMX1BO60663 GAPDHP59-201ENST00000435908 267 ntBASIC5.52□□□□□ -1.53
LMX1BO60663 AC139712.3-201ENST00000443926 639 ntTSL 2 BASIC5.52□□□□□ -1.53
LMX1BO60663 TRIM6-205ENST00000445329 2951 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
LMX1BO60663 AL022237.1-201ENST00000446663 358 ntBASIC5.52□□□□□ -1.53
LMX1BO60663 AL022319.1-201ENST00000458183 1167 ntBASIC5.52□□□□□ -1.53
LMX1BO60663 AC092905.1-201ENST00000467527 949 ntBASIC5.52□□□□□ -1.53
LMX1BO60663 SLC25A51P1-201ENST00000468432 871 ntBASIC5.52□□□□□ -1.53
LMX1BO60663 AC094085.1-201ENST00000468914 584 ntBASIC5.52□□□□□ -1.53
LMX1BO60663 AC078785.1-205ENST00000491578 482 ntTSL 4 BASIC5.52□□□□□ -1.53
LMX1BO60663 AC131392.1-201ENST00000506490 633 ntBASIC5.52□□□□□ -1.53
LMX1BO60663 AC147055.1-201ENST00000509261 750 ntBASIC5.52□□□□□ -1.53
LMX1BO60663 TRIM51DP-201ENST00000529746 596 ntBASIC5.52□□□□□ -1.53
LMX1BO60663 AP005436.1-201ENST00000531454 488 ntTSL 2 BASIC5.52□□□□□ -1.53
LMX1BO60663 VEPH1-219ENST00000537559 992 ntTSL 5 BASIC5.52□□□□□ -1.53
LMX1BO60663 AC018558.5-201ENST00000565840 952 ntBASIC5.52□□□□□ -1.53
LMX1BO60663 AC092718.4-201ENST00000566639 716 ntBASIC5.52□□□□□ -1.53
LMX1BO60663 C16orf97-205ENST00000568524 406 ntTSL 5 BASIC5.52□□□□□ -1.53
LMX1BO60663 AC005291.1-201ENST00000577743 641 ntTSL 2 BASIC5.52□□□□□ -1.53
LMX1BO60663 MIR3189-201ENST00000578735 73 ntBASIC5.52□□□□□ -1.53
LMX1BO60663 ZNF814-214ENST00000600634 461 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
LMX1BO60663 IGFL2-AS1-206ENST00000601263 446 ntTSL 3 BASIC5.52□□□□□ -1.53
LMX1BO60663 AC073046.2-201ENST00000604756 527 ntBASIC5.52□□□□□ -1.53
LMX1BO60663 AC016542.1-201ENST00000608259 493 ntBASIC5.52□□□□□ -1.53
LMX1BO60663 AL355816.2-201ENST00000610049 647 ntBASIC5.52□□□□□ -1.53
LMX1BO60663 AL136097.3-201ENST00000611097 505 ntBASIC5.52□□□□□ -1.53
LMX1BO60663 AP003789.1-201ENST00000617737 605 ntBASIC5.52□□□□□ -1.53
LMX1BO60663 AC253576.2-201ENST00000618815 580 ntBASIC5.52□□□□□ -1.53
LMX1BO60663 HPVC1-201ENST00000629899 1198 ntBASIC5.52□□□□□ -1.53
LMX1BO60663 OSBPL9-206ENST00000453295 2842 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
LMX1BO60663 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC5.52□□□□□ -1.53
LMX1BO60663 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC5.52□□□□□ -1.53
LMX1BO60663 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC5.52□□□□□ -1.53
LMX1BO60663 IMMTP1-201ENST00000435590 2219 ntBASIC5.52□□□□□ -1.53
LMX1BO60663 AC074141.1-201ENST00000588129 2995 ntBASIC5.52□□□□□ -1.53
LMX1BO60663 AC068769.1-201ENST00000474767 2426 ntBASIC5.52□□□□□ -1.53
LMX1BO60663 TIMM21-201ENST00000169551 3095 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
LMX1BO60663 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
LMX1BO60663 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
LMX1BO60663 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC5.51□□□□□ -1.53
LMX1BO60663 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
LMX1BO60663 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
LMX1BO60663 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
LMX1BO60663 AC005225.5-201ENST00000623547 2225 ntBASIC5.51□□□□□ -1.53
LMX1BO60663 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
LMX1BO60663 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
LMX1BO60663 ATXN2-202ENST00000389153 3854 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
LMX1BO60663 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
LMX1BO60663 DNM1L-205ENST00000414834 4211 ntTSL 2 BASIC5.51□□□□□ -1.53
LMX1BO60663 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
LMX1BO60663 RNA5SP350-201ENST00000363298 111 ntBASIC5.51□□□□□ -1.53
LMX1BO60663 EEF1AKMT1-201ENST00000382754 875 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
LMX1BO60663 RNU6-1176P-201ENST00000390955 107 ntBASIC5.51□□□□□ -1.53
LMX1BO60663 YWHAZP6-201ENST00000399764 738 ntBASIC5.51□□□□□ -1.53
LMX1BO60663 AC244033.1-201ENST00000426826 870 ntBASIC5.51□□□□□ -1.53
LMX1BO60663 AC108479.1-201ENST00000431142 427 ntBASIC5.51□□□□□ -1.53
LMX1BO60663 MED28P4-201ENST00000433137 572 ntBASIC5.51□□□□□ -1.53
LMX1BO60663 UBE2V2P1-201ENST00000434717 398 ntBASIC5.51□□□□□ -1.53
LMX1BO60663 H3F3BP1-201ENST00000440551 403 ntBASIC5.51□□□□□ -1.53
LMX1BO60663 AL355390.2-201ENST00000446691 880 ntTSL 5 BASIC5.51□□□□□ -1.53
LMX1BO60663 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC5.51□□□□□ -1.53
LMX1BO60663 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC5.51□□□□□ -1.53
LMX1BO60663 AC108103.1-201ENST00000511286 446 ntBASIC5.51□□□□□ -1.53
LMX1BO60663 AC010230.1-201ENST00000514115 443 ntTSL 3 BASIC5.51□□□□□ -1.53
LMX1BO60663 OR4A46P-201ENST00000527255 933 ntBASIC5.51□□□□□ -1.53
LMX1BO60663 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC5.51□□□□□ -1.53
LMX1BO60663 AC009120.3-201ENST00000563335 499 ntBASIC5.51□□□□□ -1.53
LMX1BO60663 AL589863.1-201ENST00000595383 631 ntBASIC5.51□□□□□ -1.53
LMX1BO60663 AP005131.7-201ENST00000610087 611 ntBASIC5.51□□□□□ -1.53
LMX1BO60663 SMR3B-204ENST00000614072 783 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
LMX1BO60663 MIR6085-201ENST00000618314 110 ntBASIC5.51□□□□□ -1.53
LMX1BO60663 AD000090.1-201ENST00000638356 494 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
LMX1BO60663 OR2AK2-202ENST00000641852 1008 ntAPPRIS P2 BASIC5.51□□□□□ -1.53
LMX1BO60663 AL163152.1-201ENST00000642001 374 ntBASIC5.51□□□□□ -1.53
LMX1BO60663 KCNA2-209ENST00000639048 10836 ntTSL 5 BASIC5.51□□□□□ -1.53
LMX1BO60663 ZNF605-204ENST00000392321 6156 ntAPPRIS ALT2 TSL 2 BASIC5.51□□□□□ -1.53
LMX1BO60663 CYLD-207ENST00000564326 3259 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
LMX1BO60663 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
LMX1BO60663 AC083899.2-201ENST00000423285 1376 ntBASIC5.51□□□□□ -1.53
LMX1BO60663 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC5.51□□□□□ -1.53
LMX1BO60663 AL669831.5-218ENST00000591702 1873 ntBASIC5.51□□□□□ -1.53
LMX1BO60663 PLEKHA1-205ENST00000433307 3704 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
LMX1BO60663 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
LMX1BO60663 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC5.51□□□□□ -1.53
LMX1BO60663 AL353743.3-201ENST00000442109 1468 ntBASIC5.51□□□□□ -1.53
LMX1BO60663 ZNF675-201ENST00000359788 2301 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
LMX1BO60663 TMPRSS11F-201ENST00000356291 2088 ntAPPRIS P1 TSL 2 BASIC5.51□□□□□ -1.53
LMX1BO60663 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
LMX1BO60663 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC5.5□□□□□ -1.53
LMX1BO60663 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
LMX1BO60663 ATP6V1A-201ENST00000273398 4591 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
LMX1BO60663 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC5.5□□□□□ -1.53
LMX1BO60663 GABRA3-204ENST00000535043 1697 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms