Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC026108.1-201ENST00000635444 547 ntBASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 MCTP2-208ENST00000557742 1957 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 ABLIM1-207ENST00000392955 7408 ntTSL 5 BASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 AC073544.1-201ENST00000600110 1595 ntBASIC7.84□□□□□ -1.15
CCDC39Q9UFE4 AL731556.1-201ENST00000394628 3711 ntBASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 LINC01720-201ENST00000413356 2216 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 STK32A-202ENST00000397936 5393 ntAPPRIS P1 TSL 5 BASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 MEF2C-249ENST00000637481 6088 ntTSL 5 BASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 GOLT1B-201ENST00000229314 3227 ntAPPRIS P2 TSL 1 (best) BASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 ARMCX5-201ENST00000246174 2899 ntAPPRIS P1 TSL 2 BASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 TTC33-207ENST00000637375 1824 ntTSL 5 BASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 ALS2CR12-207ENST00000439709 1626 ntAPPRIS ALT2 TSL 2 BASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 BLOC1S2-206ENST00000618916 2470 ntTSL 5 BASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 RNU5E-10P-201ENST00000363506 118 ntBASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 RNU4-28P-201ENST00000364739 141 ntBASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 RNU12-2P-201ENST00000364789 156 ntBASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 AP002784.2-201ENST00000397300 549 ntBASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 RN7SKP148-201ENST00000410179 275 ntBASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 AC017035.1-201ENST00000411999 1115 ntBASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 NRIR-202ENST00000414795 506 ntTSL 3 BASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 AL139042.1-201ENST00000429137 305 ntTSL 3 BASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 AL513303.1-201ENST00000432452 591 ntTSL 2 BASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 CCDC13-AS1-202ENST00000446950 554 ntTSL 4 BASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 AL357143.1-201ENST00000457239 934 ntTSL 5 BASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 AL391863.1-202ENST00000457427 612 ntTSL 5 BASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 MTND4LP3-201ENST00000468320 276 ntBASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 AC002401.2-201ENST00000511361 430 ntTSL 3 BASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 MTCO3P27-201ENST00000514397 196 ntBASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 RN7SKP248-201ENST00000516278 305 ntBASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 XAGE1B-205ENST00000518075 472 ntAPPRIS P1 TSL 2 BASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 SFTA3-210ENST00000521945 1116 ntTSL 2 BASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 AC083973.1-201ENST00000523459 590 ntTSL 2 BASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 AC011410.1-201ENST00000524175 705 ntTSL 5 BASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 AC068205.2-201ENST00000532864 771 ntTSL 5 BASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 MAGOHB-204ENST00000539554 666 ntTSL 3 BASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 RFPL1S-203ENST00000539579 330 ntBASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 ZNF321P-202ENST00000550843 495 ntBASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 PWRN1-206ENST00000565512 433 ntTSL 2 BASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 AC106730.2-201ENST00000566641 540 ntBASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 LINC01919-201ENST00000578610 568 ntTSL 5 BASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 SIGLECL1-205ENST00000597824 870 ntAPPRIS ALT2 TSL 1 (best) BASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 AC124856.1-201ENST00000600819 896 ntBASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 AC024451.4-201ENST00000602578 752 ntBASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 AC015540.1-201ENST00000615828 501 ntBASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 AC121761.2-201ENST00000617300 689 ntBASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 OR1N1-202ENST00000619659 939 ntBASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 AC018558.4-201ENST00000622153 281 ntBASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 AP002782.1-201ENST00000623107 614 ntBASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 AC022021.1-201ENST00000634334 843 ntTSL 5 BASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 DNAJC15-201ENST00000379221 7853 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 ATG12-202ENST00000500945 1430 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 KIF20A-201ENST00000394894 3201 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 AC009120.2-204ENST00000621548 2032 ntBASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 FABP2-201ENST00000274024 2478 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
CCDC39Q9UFE4 ATAD1-202ENST00000328142 2939 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 LINC01103-201ENST00000430551 1457 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 LRRC37B-201ENST00000327564 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 KCNAB1-212ENST00000490337 3122 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 OR4K1-201ENST00000285600 1076 ntAPPRIS P1 BASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 OR2M1P-201ENST00000318104 951 ntBASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 HYPM-201ENST00000341016 501 ntAPPRIS P1 BASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 AMELX-201ENST00000348912 737 ntTSL 5 BASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 RNA5SP114-201ENST00000363780 113 ntBASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 RN7SKP47-201ENST00000365347 328 ntBASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 XAGE5-202ENST00000375501 415 ntAPPRIS P1 TSL 5 BASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 SNORA70.9-201ENST00000384370 135 ntBASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 TRAV38-1-201ENST00000390464 353 ntAPPRIS P1 BASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 SLC20A1P1-201ENST00000413906 956 ntBASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 MTATP6P20-201ENST00000414147 562 ntBASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 AL359885.1-201ENST00000415786 903 ntBASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 P2RY10P2-201ENST00000416730 913 ntBASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 AC007384.1-202ENST00000417026 891 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 RPL22P18-201ENST00000417197 377 ntBASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 BPESC1-201ENST00000418282 3522 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 QRSL1P2-201ENST00000418582 964 ntBASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 KRR1P1-201ENST00000419430 803 ntBASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 GRPEL2P2-201ENST00000421856 670 ntBASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 AL121882.1-201ENST00000422893 417 ntBASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC7.82□□□□□ -1.16
CCDC39Q9UFE4 HIGD1AP4-201ENST00000430194 280 ntBASIC7.82□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 85.2 ms