Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
NKX3-1Q99801 OR4F17-201ENST00000318050 1054 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
NKX3-1Q99801 OR4F4-201ENST00000326183 1054 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
NKX3-1Q99801 OR4F5-201ENST00000335137 1054 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
NKX3-1Q99801 AC019178.1-201ENST00000392337 440 ntBASIC5.41□□□□□ -1.54
NKX3-1Q99801 Z82198.3-201ENST00000421145 199 ntBASIC5.41□□□□□ -1.54
NKX3-1Q99801 AC083862.1-201ENST00000427378 1242 ntBASIC5.41□□□□□ -1.54
NKX3-1Q99801 RPL34P27-201ENST00000428810 349 ntBASIC5.41□□□□□ -1.54
NKX3-1Q99801 AL513348.1-201ENST00000435554 440 ntTSL 3 BASIC5.41□□□□□ -1.54
NKX3-1Q99801 AC079763.1-201ENST00000441295 738 ntTSL 3 BASIC5.41□□□□□ -1.54
NKX3-1Q99801 AC245291.3-201ENST00000443400 292 ntBASIC5.41□□□□□ -1.54
NKX3-1Q99801 AL158835.1-204ENST00000449693 371 ntTSL 3 BASIC5.41□□□□□ -1.54
NKX3-1Q99801 WDR11-AS1-201ENST00000451706 1108 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
NKX3-1Q99801 AC092164.1-201ENST00000452212 726 ntTSL 2 BASIC5.41□□□□□ -1.54
NKX3-1Q99801 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC5.41□□□□□ -1.54
NKX3-1Q99801 RARRES2P3-201ENST00000457739 473 ntBASIC5.41□□□□□ -1.54
NKX3-1Q99801 AP002371.1-201ENST00000463604 433 ntBASIC5.41□□□□□ -1.54
NKX3-1Q99801 SSBP1-205ENST00000465582 731 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
NKX3-1Q99801 AP003385.3-201ENST00000472498 287 ntBASIC5.41□□□□□ -1.54
NKX3-1Q99801 AC108941.2-201ENST00000506796 716 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
NKX3-1Q99801 AC093815.1-201ENST00000508637 280 ntBASIC5.41□□□□□ -1.54
NKX3-1Q99801 AC008708.1-201ENST00000517346 474 ntTSL 3 BASIC5.41□□□□□ -1.54
NKX3-1Q99801 AC083923.2-202ENST00000517773 498 ntTSL 3 BASIC5.41□□□□□ -1.54
NKX3-1Q99801 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC5.41□□□□□ -1.54
NKX3-1Q99801 AL133399.1-201ENST00000527476 298 ntBASIC5.41□□□□□ -1.54
NKX3-1Q99801 AC084851.2-201ENST00000530377 364 ntBASIC5.41□□□□□ -1.54
NKX3-1Q99801 RGS6-215ENST00000554782 1110 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
NKX3-1Q99801 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
NKX3-1Q99801 AL133163.3-201ENST00000556448 504 ntTSL 5 BASIC5.41□□□□□ -1.54
NKX3-1Q99801 AC084782.2-201ENST00000561934 839 ntTSL 3 BASIC5.41□□□□□ -1.54
NKX3-1Q99801 RNU4ATAC-201ENST00000580972 127 ntBASIC5.41□□□□□ -1.54
NKX3-1Q99801 WBP1LP11-201ENST00000586141 328 ntBASIC5.41□□□□□ -1.54
NKX3-1Q99801 CHMP1B-AS1-201ENST00000586474 553 ntTSL 4 BASIC5.41□□□□□ -1.54
NKX3-1Q99801 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC5.41□□□□□ -1.54
NKX3-1Q99801 AC004805.3-201ENST00000603178 310 ntBASIC5.41□□□□□ -1.54
NKX3-1Q99801 AC092944.2-201ENST00000605443 889 ntBASIC5.41□□□□□ -1.54
NKX3-1Q99801 MIR6889-201ENST00000613185 59 ntBASIC5.41□□□□□ -1.54
NKX3-1Q99801 AC016911.1-201ENST00000613297 452 ntBASIC5.41□□□□□ -1.54
NKX3-1Q99801 AL031658.2-201ENST00000616850 651 ntBASIC5.41□□□□□ -1.54
NKX3-1Q99801 AL353684.1-201ENST00000622677 1120 ntBASIC5.41□□□□□ -1.54
NKX3-1Q99801 CFTRP2-201ENST00000634304 199 ntBASIC5.41□□□□□ -1.54
NKX3-1Q99801 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
NKX3-1Q99801 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC5.41□□□□□ -1.54
NKX3-1Q99801 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
NKX3-1Q99801 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC5.41□□□□□ -1.54
NKX3-1Q99801 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
NKX3-1Q99801 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
NKX3-1Q99801 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC5.4□□□□□ -1.54
NKX3-1Q99801 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
NKX3-1Q99801 SNW1-204ENST00000554775 1687 ntTSL 5 BASIC5.4□□□□□ -1.54
NKX3-1Q99801 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC5.4□□□□□ -1.54
NKX3-1Q99801 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC5.4□□□□□ -1.54
NKX3-1Q99801 SEC61A2-202ENST00000304267 2030 ntTSL 2 BASIC5.4□□□□□ -1.54
NKX3-1Q99801 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.54
NKX3-1Q99801 ACTR3C-201ENST00000252071 1218 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
NKX3-1Q99801 PIH1D3-201ENST00000336387 993 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.54
NKX3-1Q99801 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
NKX3-1Q99801 ST3GAL3-212ENST00000372362 468 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
NKX3-1Q99801 RFPL3S-201ENST00000382084 1117 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
NKX3-1Q99801 SMARCE1P6-201ENST00000398372 1216 ntBASIC5.4□□□□□ -1.54
NKX3-1Q99801 CLHC1-204ENST00000407122 2139 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.54
NKX3-1Q99801 AC092651.1-201ENST00000426110 312 ntBASIC5.4□□□□□ -1.54
NKX3-1Q99801 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC5.4□□□□□ -1.54
NKX3-1Q99801 AL138767.3-201ENST00000438082 495 ntTSL 3 BASIC5.4□□□□□ -1.54
NKX3-1Q99801 AC064862.5-201ENST00000440618 334 ntBASIC5.4□□□□□ -1.54
NKX3-1Q99801 AL139161.1-201ENST00000443207 190 ntTSL 5 BASIC5.4□□□□□ -1.54
NKX3-1Q99801 OR13K1P-201ENST00000444577 975 ntBASIC5.4□□□□□ -1.54
NKX3-1Q99801 AL445307.1-201ENST00000446476 602 ntTSL 3 BASIC5.4□□□□□ -1.54
NKX3-1Q99801 AL020997.1-201ENST00000446554 349 ntBASIC5.4□□□□□ -1.54
NKX3-1Q99801 RBMY2HP-201ENST00000457961 720 ntBASIC5.4□□□□□ -1.54
NKX3-1Q99801 AL445687.2-201ENST00000458156 728 ntBASIC5.4□□□□□ -1.54
NKX3-1Q99801 MORF4L2P1-201ENST00000503761 858 ntBASIC5.4□□□□□ -1.54
NKX3-1Q99801 AC008945.1-201ENST00000505144 499 ntBASIC5.4□□□□□ -1.54
NKX3-1Q99801 USP17L23-201ENST00000506619 551 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
NKX3-1Q99801 AC093870.1-201ENST00000506837 213 ntBASIC5.4□□□□□ -1.54
NKX3-1Q99801 AC138517.1-201ENST00000515724 568 ntBASIC5.4□□□□□ -1.54
NKX3-1Q99801 RNA5SP400-201ENST00000517155 111 ntBASIC5.4□□□□□ -1.54
NKX3-1Q99801 AP001208.1-201ENST00000518612 408 ntTSL 3 BASIC5.4□□□□□ -1.54
NKX3-1Q99801 AC245519.1-201ENST00000522799 512 ntTSL 4 BASIC5.4□□□□□ -1.54
NKX3-1Q99801 HNRNPRP2-201ENST00000528421 743 ntBASIC5.4□□□□□ -1.54
NKX3-1Q99801 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC5.4□□□□□ -1.54
NKX3-1Q99801 ST3GAL3-232ENST00000531451 420 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
NKX3-1Q99801 EBF2-204ENST00000535548 1017 ntTSL 2 BASIC5.4□□□□□ -1.54
NKX3-1Q99801 AL357153.3-201ENST00000553982 611 ntTSL 3 BASIC5.4□□□□□ -1.54
NKX3-1Q99801 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC5.4□□□□□ -1.54
NKX3-1Q99801 RPL7AP69-201ENST00000595306 806 ntBASIC5.4□□□□□ -1.54
NKX3-1Q99801 AC027334.1-201ENST00000603257 310 ntBASIC5.4□□□□□ -1.54
NKX3-1Q99801 GMCL1P2-201ENST00000605230 823 ntBASIC5.4□□□□□ -1.54
NKX3-1Q99801 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC5.4□□□□□ -1.54
NKX3-1Q99801 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC5.4□□□□□ -1.54
NKX3-1Q99801 AC006924.1-201ENST00000610750 559 ntBASIC5.4□□□□□ -1.54
NKX3-1Q99801 SMR3B-204ENST00000614072 783 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
NKX3-1Q99801 RPL31P11-201ENST00000426558 1558 ntBASIC5.4□□□□□ -1.55
NKX3-1Q99801 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC5.4□□□□□ -1.55
NKX3-1Q99801 AL132656.3-201ENST00000606384 1595 ntBASIC5.4□□□□□ -1.55
NKX3-1Q99801 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC5.4□□□□□ -1.55
NKX3-1Q99801 ZNF605-204ENST00000392321 6156 ntAPPRIS ALT2 TSL 2 BASIC5.4□□□□□ -1.55
NKX3-1Q99801 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
NKX3-1Q99801 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
NKX3-1Q99801 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC5.4□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms