Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC092865.1-201ENST00000544395 1023 ntBASIC6.18□□□□□ -1.42
VPS39Q96JC1 LINC02463-201ENST00000546414 497 ntTSL 3 BASIC6.18□□□□□ -1.42
VPS39Q96JC1 AC123567.2-202ENST00000550759 446 ntTSL 3 BASIC6.18□□□□□ -1.42
VPS39Q96JC1 DAAM1-208ENST00000556135 582 ntTSL 3 BASIC6.18□□□□□ -1.42
VPS39Q96JC1 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC6.18□□□□□ -1.42
VPS39Q96JC1 LYRM1-208ENST00000567954 460 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
VPS39Q96JC1 AL161457.2-206ENST00000592778 802 ntTSL 5 BASIC6.18□□□□□ -1.42
VPS39Q96JC1 RPARP-AS1-204ENST00000594818 445 ntTSL 3 BASIC6.18□□□□□ -1.42
VPS39Q96JC1 AC010998.3-201ENST00000613871 631 ntBASIC6.18□□□□□ -1.42
VPS39Q96JC1 Metazoa_SRP.66-201ENST00000615609 282 ntBASIC6.18□□□□□ -1.42
VPS39Q96JC1 AL137067.2-201ENST00000621202 131 ntBASIC6.18□□□□□ -1.42
VPS39Q96JC1 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC6.18□□□□□ -1.42
VPS39Q96JC1 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC6.18□□□□□ -1.42
VPS39Q96JC1 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC6.18□□□□□ -1.42
VPS39Q96JC1 AC022164.1-201ENST00000568767 2673 ntBASIC6.18□□□□□ -1.42
VPS39Q96JC1 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
VPS39Q96JC1 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
VPS39Q96JC1 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC6.18□□□□□ -1.42
VPS39Q96JC1 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC6.18□□□□□ -1.42
VPS39Q96JC1 PMFBP1-207ENST00000537465 3935 ntAPPRIS ALT2 TSL 2 BASIC6.18□□□□□ -1.42
VPS39Q96JC1 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC6.17□□□□□ -1.42
VPS39Q96JC1 HSD17B4-202ENST00000414835 2551 ntTSL 2 BASIC6.17□□□□□ -1.42
VPS39Q96JC1 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
VPS39Q96JC1 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
VPS39Q96JC1 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
VPS39Q96JC1 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
VPS39Q96JC1 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC6.17□□□□□ -1.42
VPS39Q96JC1 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
VPS39Q96JC1 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
VPS39Q96JC1 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC6.17□□□□□ -1.42
VPS39Q96JC1 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC6.17□□□□□ -1.42
VPS39Q96JC1 TLR10-208ENST00000622002 3673 ntAPPRIS P1 TSL 3 BASIC6.17□□□□□ -1.42
VPS39Q96JC1 AC217777.1-201ENST00000570034 1471 ntBASIC6.17□□□□□ -1.42
VPS39Q96JC1 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC6.17□□□□□ -1.42
VPS39Q96JC1 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
VPS39Q96JC1 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
VPS39Q96JC1 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC6.17□□□□□ -1.42
VPS39Q96JC1 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
VPS39Q96JC1 AC003045.1-201ENST00000398779 713 ntBASIC6.17□□□□□ -1.42
VPS39Q96JC1 AL445213.1-201ENST00000412589 747 ntBASIC6.17□□□□□ -1.42
VPS39Q96JC1 AL360013.1-201ENST00000419031 858 ntBASIC6.17□□□□□ -1.42
VPS39Q96JC1 LINC01031-201ENST00000420807 779 ntTSL 3 BASIC6.17□□□□□ -1.42
VPS39Q96JC1 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC6.17□□□□□ -1.42
VPS39Q96JC1 PRUNEP1-201ENST00000425846 705 ntBASIC6.17□□□□□ -1.42
VPS39Q96JC1 AC112492.2-201ENST00000432774 1030 ntBASIC6.17□□□□□ -1.42
VPS39Q96JC1 AL022324.2-201ENST00000434827 780 ntBASIC6.17□□□□□ -1.42
VPS39Q96JC1 SOCS5P1-201ENST00000440415 949 ntBASIC6.17□□□□□ -1.42
VPS39Q96JC1 POU5F1P5-201ENST00000445059 658 ntBASIC6.17□□□□□ -1.42
VPS39Q96JC1 AL031275.1-201ENST00000457405 418 ntTSL 3 BASIC6.17□□□□□ -1.42
VPS39Q96JC1 RPL12P31-201ENST00000478433 450 ntBASIC6.17□□□□□ -1.42
VPS39Q96JC1 PPP1R11P1-201ENST00000486095 376 ntBASIC6.17□□□□□ -1.42
VPS39Q96JC1 LINC01386-201ENST00000506196 440 ntTSL 3 BASIC6.17□□□□□ -1.42
VPS39Q96JC1 AL035458.2-201ENST00000512005 478 ntTSL 3 BASIC6.17□□□□□ -1.42
VPS39Q96JC1 LINC01618-201ENST00000514957 727 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
VPS39Q96JC1 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC6.17□□□□□ -1.42
VPS39Q96JC1 AC124891.1-201ENST00000536322 519 ntBASIC6.17□□□□□ -1.42
VPS39Q96JC1 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC6.17□□□□□ -1.42
VPS39Q96JC1 AC112491.1-201ENST00000602890 248 ntTSL 5 BASIC6.17□□□□□ -1.42
VPS39Q96JC1 AL591167.1-201ENST00000607321 456 ntBASIC6.17□□□□□ -1.42
VPS39Q96JC1 ARF4-AS1-203ENST00000607782 552 ntTSL 3 BASIC6.17□□□□□ -1.42
VPS39Q96JC1 AC068726.1-201ENST00000610993 341 ntBASIC6.17□□□□□ -1.42
VPS39Q96JC1 MIR6811-201ENST00000620409 58 ntBASIC6.17□□□□□ -1.42
VPS39Q96JC1 AP003072.5-201ENST00000623872 773 ntBASIC6.17□□□□□ -1.42
VPS39Q96JC1 UBA3-213ENST00000631029 123 ntTSL 5 BASIC6.17□□□□□ -1.42
VPS39Q96JC1 MAPK10-350ENST00000641777 965 ntBASIC6.17□□□□□ -1.42
VPS39Q96JC1 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
VPS39Q96JC1 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
VPS39Q96JC1 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
VPS39Q96JC1 RUNX1T1-234ENST00000521553 1346 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
VPS39Q96JC1 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
VPS39Q96JC1 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
VPS39Q96JC1 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
VPS39Q96JC1 AC114876.1-201ENST00000490962 1366 ntBASIC6.17□□□□□ -1.42
VPS39Q96JC1 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC6.17□□□□□ -1.42
VPS39Q96JC1 CABYR-207ENST00000486759 1664 ntAPPRIS P4 TSL 5 BASIC6.17□□□□□ -1.42
VPS39Q96JC1 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC6.17□□□□□ -1.42
VPS39Q96JC1 LGALS8-204ENST00000352231 1402 ntAPPRIS P4 TSL 2 BASIC6.16□□□□□ -1.42
VPS39Q96JC1 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
VPS39Q96JC1 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
VPS39Q96JC1 PLN-201ENST00000357525 2001 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
VPS39Q96JC1 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
VPS39Q96JC1 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
VPS39Q96JC1 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
VPS39Q96JC1 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
VPS39Q96JC1 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC6.16□□□□□ -1.42
VPS39Q96JC1 RNU1-49P-201ENST00000363468 159 ntBASIC6.16□□□□□ -1.42
VPS39Q96JC1 SLC8A1-AS1-202ENST00000417875 344 ntTSL 2 BASIC6.16□□□□□ -1.42
VPS39Q96JC1 OR6R1P-201ENST00000431838 940 ntBASIC6.16□□□□□ -1.42
VPS39Q96JC1 AL049594.1-201ENST00000432834 805 ntTSL 3 BASIC6.16□□□□□ -1.42
VPS39Q96JC1 SCP2-207ENST00000435345 894 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
VPS39Q96JC1 AL731544.1-201ENST00000436500 370 ntTSL 5 BASIC6.16□□□□□ -1.42
VPS39Q96JC1 BX679664.2-201ENST00000439282 283 ntBASIC6.16□□□□□ -1.42
VPS39Q96JC1 GAPDHP23-201ENST00000444823 993 ntBASIC6.16□□□□□ -1.42
VPS39Q96JC1 KRTAP2-5P-201ENST00000446109 396 ntBASIC6.16□□□□□ -1.42
VPS39Q96JC1 SNX18P24-201ENST00000505249 671 ntBASIC6.16□□□□□ -1.42
VPS39Q96JC1 OR4D12P-201ENST00000509361 911 ntBASIC6.16□□□□□ -1.42
VPS39Q96JC1 WDFY3-AS1-201ENST00000510449 493 ntTSL 3 BASIC6.16□□□□□ -1.42
VPS39Q96JC1 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC6.16□□□□□ -1.42
VPS39Q96JC1 AC013724.1-201ENST00000511962 783 ntTSL 2 BASIC6.16□□□□□ -1.42
VPS39Q96JC1 AC113191.1-201ENST00000517759 403 ntBASIC6.16□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 109.1 ms