Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 SDC4P-201ENST00000453285 601 ntBASIC5.75□□□□□ -1.49
SDC1P18827 NDUFB3-204ENST00000454214 547 ntAPPRIS P1 TSL 2 BASIC5.75□□□□□ -1.49
SDC1P18827 RPS7P10-201ENST00000464254 603 ntBASIC5.75□□□□□ -1.49
SDC1P18827 RN7SL836P-201ENST00000476140 296 ntBASIC5.75□□□□□ -1.49
SDC1P18827 AC104411.1-201ENST00000480817 320 ntTSL 3 BASIC5.75□□□□□ -1.49
SDC1P18827 USP9YP2-201ENST00000504503 1000 ntBASIC5.75□□□□□ -1.49
SDC1P18827 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC5.75□□□□□ -1.49
SDC1P18827 USP9YP1-201ENST00000513521 1002 ntBASIC5.75□□□□□ -1.49
SDC1P18827 AC112242.1-201ENST00000515805 406 ntTSL 3 BASIC5.75□□□□□ -1.49
SDC1P18827 OR7E158P-201ENST00000524483 910 ntBASIC5.75□□□□□ -1.49
SDC1P18827 AL035078.1-201ENST00000531962 820 ntTSL 5 BASIC5.75□□□□□ -1.49
SDC1P18827 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC5.75□□□□□ -1.49
SDC1P18827 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC5.75□□□□□ -1.49
SDC1P18827 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
SDC1P18827 AC211486.2-201ENST00000576046 280 ntTSL 3 BASIC5.75□□□□□ -1.49
SDC1P18827 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC5.75□□□□□ -1.49
SDC1P18827 AL138960.1-201ENST00000613838 513 ntBASIC5.75□□□□□ -1.49
SDC1P18827 CKLF-CMTM1-206ENST00000616804 678 ntAPPRIS ALT2 TSL 2 BASIC5.75□□□□□ -1.49
SDC1P18827 AC005899.6-201ENST00000620729 297 ntBASIC5.75□□□□□ -1.49
SDC1P18827 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
SDC1P18827 PAK3-202ENST00000360648 2241 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
SDC1P18827 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC5.75□□□□□ -1.49
SDC1P18827 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC5.75□□□□□ -1.49
SDC1P18827 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC5.75□□□□□ -1.49
SDC1P18827 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SDC1P18827 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
SDC1P18827 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC5.75□□□□□ -1.49
SDC1P18827 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SDC1P18827 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
SDC1P18827 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
SDC1P18827 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SDC1P18827 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC5.74□□□□□ -1.49
SDC1P18827 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SDC1P18827 CRP-204ENST00000368112 787 ntTSL 2 BASIC5.74□□□□□ -1.49
SDC1P18827 TRAV13-1-201ENST00000390436 360 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
SDC1P18827 AC009965.1-201ENST00000411436 570 ntTSL 4 BASIC5.74□□□□□ -1.49
SDC1P18827 AC105275.1-201ENST00000417794 491 ntTSL 3 BASIC5.74□□□□□ -1.49
SDC1P18827 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC5.74□□□□□ -1.49
SDC1P18827 AC021876.1-201ENST00000425959 359 ntBASIC5.74□□□□□ -1.49
SDC1P18827 AC244453.3-201ENST00000426275 459 ntTSL 5 BASIC5.74□□□□□ -1.49
SDC1P18827 AL590399.2-201ENST00000427536 309 ntBASIC5.74□□□□□ -1.49
SDC1P18827 AC104463.2-201ENST00000428573 314 ntTSL 5 BASIC5.74□□□□□ -1.49
SDC1P18827 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SDC1P18827 LINC00328-2P-201ENST00000436585 219 ntBASIC5.74□□□□□ -1.49
SDC1P18827 AC064862.5-201ENST00000440618 334 ntBASIC5.74□□□□□ -1.49
SDC1P18827 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC5.74□□□□□ -1.49
SDC1P18827 AC016027.4-201ENST00000450866 277 ntBASIC5.74□□□□□ -1.49
SDC1P18827 MIR205HG-209ENST00000458250 406 ntTSL 3 BASIC5.74□□□□□ -1.49
SDC1P18827 SYPL1-205ENST00000470347 1193 ntTSL 3 BASIC5.74□□□□□ -1.49
SDC1P18827 RPL12P30-201ENST00000488389 499 ntBASIC5.74□□□□□ -1.49
SDC1P18827 LINC02217-201ENST00000505844 687 ntTSL 2 BASIC5.74□□□□□ -1.49
SDC1P18827 OR51A1P-201ENST00000511110 946 ntBASIC5.74□□□□□ -1.49
SDC1P18827 RN7SKP288-201ENST00000516227 268 ntBASIC5.74□□□□□ -1.49
SDC1P18827 TMEM68-213ENST00000522576 826 ntTSL 2 BASIC5.74□□□□□ -1.49
SDC1P18827 AL137224.1-201ENST00000527984 389 ntTSL 2 BASIC5.74□□□□□ -1.49
SDC1P18827 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC5.74□□□□□ -1.49
SDC1P18827 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC5.74□□□□□ -1.49
SDC1P18827 HNRNPCP1-201ENST00000556181 766 ntBASIC5.74□□□□□ -1.49
SDC1P18827 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC5.74□□□□□ -1.49
SDC1P18827 CCDC58P1-201ENST00000578567 430 ntBASIC5.74□□□□□ -1.49
SDC1P18827 CT45A1-201ENST00000594117 1087 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SDC1P18827 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC5.74□□□□□ -1.49
SDC1P18827 NDUFB9P1-201ENST00000604683 510 ntBASIC5.74□□□□□ -1.49
SDC1P18827 AL080312.2-201ENST00000613001 630 ntBASIC5.74□□□□□ -1.49
SDC1P18827 MIR6774-201ENST00000614651 70 ntBASIC5.74□□□□□ -1.49
SDC1P18827 AL589745.2-201ENST00000616366 555 ntTSL 4 BASIC5.74□□□□□ -1.49
SDC1P18827 AC096861.1-201ENST00000616652 240 ntBASIC5.74□□□□□ -1.49
SDC1P18827 AL355974.3-201ENST00000617383 467 ntBASIC5.74□□□□□ -1.49
SDC1P18827 AC010325.3-201ENST00000641084 394 ntBASIC5.74□□□□□ -1.49
SDC1P18827 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
SDC1P18827 AP002004.1-203ENST00000531091 1768 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SDC1P18827 THAP12P9-201ENST00000503971 2360 ntBASIC5.74□□□□□ -1.49
SDC1P18827 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SDC1P18827 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SDC1P18827 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC5.74□□□□□ -1.49
SDC1P18827 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SDC1P18827 AMN1-208ENST00000537562 1538 ntTSL 5 BASIC5.74□□□□□ -1.49
SDC1P18827 KYNUP3-201ENST00000574386 1341 ntBASIC5.74□□□□□ -1.49
SDC1P18827 SLC2A14-221ENST00000616981 3366 ntAPPRIS P3 TSL 5 BASIC5.73□□□□□ -1.49
SDC1P18827 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SDC1P18827 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC5.73□□□□□ -1.49
SDC1P18827 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC5.73□□□□□ -1.49
SDC1P18827 ZFP62-201ENST00000502412 3415 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
SDC1P18827 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SDC1P18827 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SDC1P18827 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
SDC1P18827 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SDC1P18827 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC5.73□□□□□ -1.49
SDC1P18827 SCGB1D4-201ENST00000358585 439 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SDC1P18827 RNA5SP110-201ENST00000362638 115 ntBASIC5.73□□□□□ -1.49
SDC1P18827 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
SDC1P18827 MORN2-202ENST00000409077 465 ntTSL 5 BASIC5.73□□□□□ -1.49
SDC1P18827 LIX1L-AS1-202ENST00000412239 570 ntTSL 2 BASIC5.73□□□□□ -1.49
SDC1P18827 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC5.73□□□□□ -1.49
SDC1P18827 RPL35AP31-201ENST00000418340 337 ntBASIC5.73□□□□□ -1.49
SDC1P18827 LINC01728-201ENST00000428529 524 ntTSL 2 BASIC5.73□□□□□ -1.49
SDC1P18827 HNRNPA1P18-201ENST00000433537 927 ntBASIC5.73□□□□□ -1.49
SDC1P18827 LINC02384-202ENST00000441255 567 ntTSL 4 BASIC5.73□□□□□ -1.49
SDC1P18827 RBMY2AP-201ENST00000445405 1157 ntBASIC5.73□□□□□ -1.49
SDC1P18827 AC079612.2-201ENST00000446029 348 ntTSL 2 BASIC5.73□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 75.7 ms