Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 SERPINB7-206ENST00000540675 2193 ntTSL 2 BASIC5.8□□□□□ -1.48
FOXA1P55317 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
FOXA1P55317 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
FOXA1P55317 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
FOXA1P55317 MDM4-216ENST00000616250 9597 ntTSL 5 BASIC5.8□□□□□ -1.48
FOXA1P55317 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
FOXA1P55317 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
FOXA1P55317 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC5.79□□□□□ -1.48
FOXA1P55317 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
FOXA1P55317 THAP12P9-201ENST00000503971 2360 ntBASIC5.79□□□□□ -1.48
FOXA1P55317 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
FOXA1P55317 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC5.79□□□□□ -1.48
FOXA1P55317 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
FOXA1P55317 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
FOXA1P55317 METTL5-202ENST00000308099 629 ntTSL 3 BASIC5.79□□□□□ -1.48
FOXA1P55317 DPH5-201ENST00000342173 1143 ntAPPRIS ALT1 TSL 1 (best) BASIC5.79□□□□□ -1.48
FOXA1P55317 TCEAL8-201ENST00000360000 1131 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
FOXA1P55317 TCEAL8-202ENST00000372685 1222 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
FOXA1P55317 PAGE2B-201ENST00000374971 493 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
FOXA1P55317 ZCCHC6-202ENST00000375947 611 ntTSL 5 BASIC5.79□□□□□ -1.48
FOXA1P55317 AL139805.1-201ENST00000407837 289 ntBASIC5.79□□□□□ -1.48
FOXA1P55317 AC104823.1-201ENST00000413290 989 ntTSL 2 BASIC5.79□□□□□ -1.48
FOXA1P55317 RPL35AP31-201ENST00000418340 337 ntBASIC5.79□□□□□ -1.48
FOXA1P55317 NMD3P2-201ENST00000421815 761 ntBASIC5.79□□□□□ -1.48
FOXA1P55317 OSBPL10-AS1-203ENST00000428872 538 ntTSL 3 BASIC5.79□□□□□ -1.48
FOXA1P55317 LINC02384-202ENST00000441255 567 ntTSL 4 BASIC5.79□□□□□ -1.48
FOXA1P55317 SMIM30-204ENST00000441359 962 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
FOXA1P55317 AC092168.1-201ENST00000443030 236 ntTSL 5 BASIC5.79□□□□□ -1.48
FOXA1P55317 DNAJC19P5-201ENST00000443295 316 ntBASIC5.79□□□□□ -1.48
FOXA1P55317 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC5.79□□□□□ -1.48
FOXA1P55317 OSTCP1-201ENST00000455507 450 ntBASIC5.79□□□□□ -1.48
FOXA1P55317 AL450345.1-201ENST00000456118 311 ntTSL 3 BASIC5.79□□□□□ -1.48
FOXA1P55317 AC078785.2-201ENST00000462010 1253 ntTSL 3 BASIC5.79□□□□□ -1.48
FOXA1P55317 PMP2-202ENST00000519260 1264 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
FOXA1P55317 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC5.79□□□□□ -1.48
FOXA1P55317 TTC39C-AS1-201ENST00000579713 817 ntTSL 5 BASIC5.79□□□□□ -1.48
FOXA1P55317 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC5.79□□□□□ -1.48
FOXA1P55317 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC5.79□□□□□ -1.48
FOXA1P55317 AC006116.9-203ENST00000591036 566 ntTSL 4 BASIC5.79□□□□□ -1.48
FOXA1P55317 WBP1LP12-201ENST00000604449 331 ntBASIC5.79□□□□□ -1.48
FOXA1P55317 AC022001.1-201ENST00000605193 268 ntBASIC5.79□□□□□ -1.48
FOXA1P55317 ARF4-AS1-203ENST00000607782 552 ntTSL 3 BASIC5.79□□□□□ -1.48
FOXA1P55317 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC5.79□□□□□ -1.48
FOXA1P55317 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC5.79□□□□□ -1.48
FOXA1P55317 AP002004.1-203ENST00000531091 1768 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
FOXA1P55317 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
FOXA1P55317 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
FOXA1P55317 DMD-228ENST00000541735 7080 ntTSL 5 BASIC5.79□□□□□ -1.48
FOXA1P55317 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
FOXA1P55317 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC5.79□□□□□ -1.48
FOXA1P55317 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
FOXA1P55317 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
FOXA1P55317 OR12D3-201ENST00000396806 1869 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
FOXA1P55317 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC5.79□□□□□ -1.48
FOXA1P55317 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC5.79□□□□□ -1.48
FOXA1P55317 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
FOXA1P55317 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
FOXA1P55317 AC097634.1-201ENST00000604491 2467 ntBASIC5.79□□□□□ -1.48
FOXA1P55317 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
FOXA1P55317 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC5.78□□□□□ -1.48
FOXA1P55317 AC010401.2-201ENST00000575137 4934 ntBASIC5.78□□□□□ -1.48
FOXA1P55317 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC5.78□□□□□ -1.48
FOXA1P55317 MSL3P1-202ENST00000440028 1468 ntBASIC5.78□□□□□ -1.48
FOXA1P55317 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC5.78□□□□□ -1.48
FOXA1P55317 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
FOXA1P55317 LGI1-219ENST00000636155 1618 ntTSL 5 BASIC5.78□□□□□ -1.48
FOXA1P55317 OR6Y1-203ENST00000641622 5128 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
FOXA1P55317 ZFP62-201ENST00000502412 3415 ntAPPRIS P1 TSL 2 BASIC5.78□□□□□ -1.48
FOXA1P55317 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC5.78□□□□□ -1.48
FOXA1P55317 SNORA21-201ENST00000362423 132 ntBASIC5.78□□□□□ -1.48
FOXA1P55317 U3.10-201ENST00000364459 214 ntBASIC5.78□□□□□ -1.48
FOXA1P55317 CRP-204ENST00000368112 787 ntTSL 2 BASIC5.78□□□□□ -1.48
FOXA1P55317 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC5.78□□□□□ -1.48
FOXA1P55317 PPARG-204ENST00000397000 1122 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
FOXA1P55317 AL132875.1-201ENST00000403623 949 ntBASIC5.78□□□□□ -1.48
FOXA1P55317 RNA5SP198-201ENST00000410376 127 ntBASIC5.78□□□□□ -1.48
FOXA1P55317 RPS21P8-201ENST00000413365 247 ntBASIC5.78□□□□□ -1.48
FOXA1P55317 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC5.78□□□□□ -1.48
FOXA1P55317 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
FOXA1P55317 AL138921.1-201ENST00000444359 846 ntTSL 5 BASIC5.78□□□□□ -1.48
FOXA1P55317 AC079612.2-201ENST00000446029 348 ntTSL 2 BASIC5.78□□□□□ -1.48
FOXA1P55317 NDUFB3-204ENST00000454214 547 ntAPPRIS P1 TSL 2 BASIC5.78□□□□□ -1.48
FOXA1P55317 MIR205HG-209ENST00000458250 406 ntTSL 3 BASIC5.78□□□□□ -1.48
FOXA1P55317 RPS7P10-201ENST00000464254 603 ntBASIC5.78□□□□□ -1.48
FOXA1P55317 AC093719.1-201ENST00000480427 441 ntBASIC5.78□□□□□ -1.48
FOXA1P55317 RPL38P3-201ENST00000484463 213 ntBASIC5.78□□□□□ -1.48
FOXA1P55317 HMGN1P17-201ENST00000513734 295 ntBASIC5.78□□□□□ -1.48
FOXA1P55317 CR383658.1-201ENST00000514609 734 ntBASIC5.78□□□□□ -1.48
FOXA1P55317 AC078899.1-201ENST00000521432 1185 ntBASIC5.78□□□□□ -1.48
FOXA1P55317 LINC02237-201ENST00000521753 805 ntTSL 3 BASIC5.78□□□□□ -1.48
FOXA1P55317 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC5.78□□□□□ -1.48
FOXA1P55317 OR56A7P-201ENST00000524865 941 ntBASIC5.78□□□□□ -1.48
FOXA1P55317 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
FOXA1P55317 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC5.78□□□□□ -1.48
FOXA1P55317 AC009387.1-201ENST00000549163 441 ntTSL 3 BASIC5.78□□□□□ -1.48
FOXA1P55317 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC5.78□□□□□ -1.48
FOXA1P55317 CT45A1-201ENST00000594117 1087 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
FOXA1P55317 AL645933.2-201ENST00000606743 1207 ntBASIC5.78□□□□□ -1.48
FOXA1P55317 AC244196.4-201ENST00000611787 392 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
FOXA1P55317 AC005899.6-201ENST00000620729 297 ntBASIC5.78□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 138.2 ms