Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC5.45□□□□□ -1.54
NKX3-1Q99801 C16orf97-205ENST00000568524 406 ntTSL 5 BASIC5.45□□□□□ -1.54
NKX3-1Q99801 AC007923.1-201ENST00000577970 505 ntTSL 4 BASIC5.45□□□□□ -1.54
NKX3-1Q99801 CCL2-202ENST00000580907 736 ntTSL 2 BASIC5.45□□□□□ -1.54
NKX3-1Q99801 MIR4732-201ENST00000581873 76 ntBASIC5.45□□□□□ -1.54
NKX3-1Q99801 AC040170.1-201ENST00000602425 564 ntTSL 2 BASIC5.45□□□□□ -1.54
NKX3-1Q99801 AC097641.3-201ENST00000613523 464 ntBASIC5.45□□□□□ -1.54
NKX3-1Q99801 PSMD10P2-203ENST00000627340 914 ntTSL 5 BASIC5.45□□□□□ -1.54
NKX3-1Q99801 AC011455.2-201ENST00000599320 3336 ntBASIC5.45□□□□□ -1.54
NKX3-1Q99801 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
NKX3-1Q99801 AF121898.1-201ENST00000440763 1860 ntTSL 5 BASIC5.45□□□□□ -1.54
NKX3-1Q99801 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC5.45□□□□□ -1.54
NKX3-1Q99801 LINC02318-201ENST00000553785 1334 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
NKX3-1Q99801 AL353743.3-201ENST00000442109 1468 ntBASIC5.45□□□□□ -1.54
NKX3-1Q99801 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
NKX3-1Q99801 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
NKX3-1Q99801 AC003973.2-201ENST00000596778 1394 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
NKX3-1Q99801 OR5AQ1P-202ENST00000641257 1534 ntBASIC5.44□□□□□ -1.54
NKX3-1Q99801 OR5AQ1P-203ENST00000641818 1529 ntBASIC5.44□□□□□ -1.54
NKX3-1Q99801 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
NKX3-1Q99801 ZNF329-201ENST00000358067 3290 ntAPPRIS P1 TSL 2 BASIC5.44□□□□□ -1.54
NKX3-1Q99801 DHRS9-204ENST00000428522 1678 ntAPPRIS P1 TSL 5 BASIC5.44□□□□□ -1.54
NKX3-1Q99801 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
NKX3-1Q99801 CCL2-201ENST00000225831 741 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
NKX3-1Q99801 PSMA6-201ENST00000261479 1029 ntAPPRIS P2 TSL 1 (best) BASIC5.44□□□□□ -1.54
NKX3-1Q99801 RNA5SP308-201ENST00000362532 115 ntBASIC5.44□□□□□ -1.54
NKX3-1Q99801 ECHDC1-202ENST00000368289 909 ntTSL 5 BASIC5.44□□□□□ -1.54
NKX3-1Q99801 CAV1-204ENST00000393470 598 ntTSL 4 BASIC5.44□□□□□ -1.54
NKX3-1Q99801 FDPSP5-201ENST00000399474 1057 ntBASIC5.44□□□□□ -1.54
NKX3-1Q99801 SULT6B1-201ENST00000407963 902 ntTSL 5 BASIC5.44□□□□□ -1.54
NKX3-1Q99801 AL157884.1-201ENST00000424561 454 ntBASIC5.44□□□□□ -1.54
NKX3-1Q99801 AC006455.6-201ENST00000426192 893 ntBASIC5.44□□□□□ -1.54
NKX3-1Q99801 AC013403.1-201ENST00000436954 263 ntBASIC5.44□□□□□ -1.54
NKX3-1Q99801 AL139220.2-214ENST00000437643 614 ntTSL 3 BASIC5.44□□□□□ -1.54
NKX3-1Q99801 BX679664.2-201ENST00000439282 283 ntBASIC5.44□□□□□ -1.54
NKX3-1Q99801 E2F6P3-201ENST00000441743 743 ntBASIC5.44□□□□□ -1.54
NKX3-1Q99801 AC092601.1-201ENST00000444526 383 ntBASIC5.44□□□□□ -1.54
NKX3-1Q99801 PPIA-203ENST00000451562 544 ntTSL 2 BASIC5.44□□□□□ -1.54
NKX3-1Q99801 PHKA2-AS1-202ENST00000452900 656 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
NKX3-1Q99801 AC015524.1-201ENST00000491585 472 ntBASIC5.44□□□□□ -1.54
NKX3-1Q99801 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC5.44□□□□□ -1.54
NKX3-1Q99801 AK6-203ENST00000502819 743 ntTSL 5 BASIC5.44□□□□□ -1.54
NKX3-1Q99801 AC092349.1-201ENST00000504903 310 ntBASIC5.44□□□□□ -1.54
NKX3-1Q99801 AC093664.1-201ENST00000511779 289 ntBASIC5.44□□□□□ -1.54
NKX3-1Q99801 BFSP2-AS1-201ENST00000515542 894 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
NKX3-1Q99801 RN7SKP196-201ENST00000516267 345 ntBASIC5.44□□□□□ -1.54
NKX3-1Q99801 SNORA81.2-201ENST00000516868 170 ntBASIC5.44□□□□□ -1.54
NKX3-1Q99801 AP001804.1-201ENST00000526868 919 ntBASIC5.44□□□□□ -1.54
NKX3-1Q99801 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC5.44□□□□□ -1.54
NKX3-1Q99801 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC5.44□□□□□ -1.54
NKX3-1Q99801 AL157871.4-201ENST00000557226 385 ntTSL 2 BASIC5.44□□□□□ -1.54
NKX3-1Q99801 TPRX1P1-201ENST00000557620 319 ntBASIC5.44□□□□□ -1.54
NKX3-1Q99801 AC079075.2-201ENST00000557964 449 ntTSL 4 BASIC5.44□□□□□ -1.54
NKX3-1Q99801 AC092718.4-201ENST00000566639 716 ntBASIC5.44□□□□□ -1.54
NKX3-1Q99801 AC126323.5-201ENST00000569913 592 ntTSL 3 BASIC5.44□□□□□ -1.54
NKX3-1Q99801 TTC39C-AS1-201ENST00000579713 817 ntTSL 5 BASIC5.44□□□□□ -1.54
NKX3-1Q99801 MIR212-201ENST00000586026 110 ntBASIC5.44□□□□□ -1.54
NKX3-1Q99801 AC012175.1-201ENST00000603755 531 ntBASIC5.44□□□□□ -1.54
NKX3-1Q99801 AC018690.1-201ENST00000608144 626 ntBASIC5.44□□□□□ -1.54
NKX3-1Q99801 AL008582.1-201ENST00000609612 442 ntBASIC5.44□□□□□ -1.54
NKX3-1Q99801 AL513478.2-201ENST00000610400 988 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
NKX3-1Q99801 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC5.44□□□□□ -1.54
NKX3-1Q99801 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC5.44□□□□□ -1.54
NKX3-1Q99801 SAMD12-AS1-201ENST00000625758 718 ntTSL 5 BASIC5.44□□□□□ -1.54
NKX3-1Q99801 AL596218.1-201ENST00000634239 1140 ntTSL 5 BASIC5.44□□□□□ -1.54
NKX3-1Q99801 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC5.44□□□□□ -1.54
NKX3-1Q99801 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
NKX3-1Q99801 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC5.44□□□□□ -1.54
NKX3-1Q99801 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC5.44□□□□□ -1.54
NKX3-1Q99801 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
NKX3-1Q99801 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
NKX3-1Q99801 SLC2A14-221ENST00000616981 3366 ntAPPRIS P3 TSL 5 BASIC5.44□□□□□ -1.54
NKX3-1Q99801 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC5.44□□□□□ -1.54
NKX3-1Q99801 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC5.44□□□□□ -1.54
NKX3-1Q99801 CABYR-207ENST00000486759 1664 ntAPPRIS P4 TSL 5 BASIC5.43□□□□□ -1.54
NKX3-1Q99801 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
NKX3-1Q99801 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC5.43□□□□□ -1.54
NKX3-1Q99801 AC074141.1-201ENST00000588129 2995 ntBASIC5.43□□□□□ -1.54
NKX3-1Q99801 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC5.43□□□□□ -1.54
NKX3-1Q99801 TLR10-207ENST00000613579 3801 ntAPPRIS P1 TSL 3 BASIC5.43□□□□□ -1.54
NKX3-1Q99801 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC5.43□□□□□ -1.54
NKX3-1Q99801 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC5.43□□□□□ -1.54
NKX3-1Q99801 AC124017.1-201ENST00000508112 1594 ntTSL 5 BASIC5.43□□□□□ -1.54
NKX3-1Q99801 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
NKX3-1Q99801 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
NKX3-1Q99801 GABRA2-215ENST00000540012 2588 ntTSL 5 BASIC5.43□□□□□ -1.54
NKX3-1Q99801 FANCD2P2-201ENST00000437591 1400 ntBASIC5.43□□□□□ -1.54
NKX3-1Q99801 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
NKX3-1Q99801 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
NKX3-1Q99801 AL442071.1-201ENST00000289890 558 ntTSL 3 BASIC5.43□□□□□ -1.54
NKX3-1Q99801 MIR433-201ENST00000384837 93 ntBASIC5.43□□□□□ -1.54
NKX3-1Q99801 SNORD94-201ENST00000386037 137 ntBASIC5.43□□□□□ -1.54
NKX3-1Q99801 AL391419.1-201ENST00000398901 1275 ntBASIC5.43□□□□□ -1.54
NKX3-1Q99801 AL445238.1-204ENST00000400311 463 ntBASIC5.43□□□□□ -1.54
NKX3-1Q99801 CYP2AC1P-201ENST00000407830 1173 ntBASIC5.43□□□□□ -1.54
NKX3-1Q99801 RN7SKP221-201ENST00000410420 301 ntBASIC5.43□□□□□ -1.54
NKX3-1Q99801 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
NKX3-1Q99801 AL160275.1-201ENST00000423632 476 ntAPPRIS P1 TSL 2 BASIC5.43□□□□□ -1.54
NKX3-1Q99801 AL512641.1-201ENST00000427232 548 ntTSL 3 BASIC5.43□□□□□ -1.54
NKX3-1Q99801 SUMO2P8-201ENST00000434672 286 ntBASIC5.43□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 92.2 ms