Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
VPS39Q96JC1 AP003486.1-201ENST00000525716 3994 ntBASIC6.22□□□□□ -1.41
VPS39Q96JC1 AL359091.1-201ENST00000449048 1734 ntBASIC6.22□□□□□ -1.41
VPS39Q96JC1 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
VPS39Q96JC1 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
VPS39Q96JC1 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
VPS39Q96JC1 ANTXR2-204ENST00000404191 1469 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
VPS39Q96JC1 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC6.21□□□□□ -1.41
VPS39Q96JC1 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC6.21□□□□□ -1.41
VPS39Q96JC1 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC6.21□□□□□ -1.41
VPS39Q96JC1 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.41
VPS39Q96JC1 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC6.21□□□□□ -1.41
VPS39Q96JC1 BCORP1-202ENST00000441139 3461 ntTSL 2 BASIC6.21□□□□□ -1.42
VPS39Q96JC1 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC6.21□□□□□ -1.42
VPS39Q96JC1 LZTFL1-201ENST00000296135 4073 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
VPS39Q96JC1 PLIN2-203ENST00000380465 631 ntTSL 2 BASIC6.21□□□□□ -1.42
VPS39Q96JC1 EEF1AKMT1-201ENST00000382754 875 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
VPS39Q96JC1 TRAJ46-201ENST00000390491 63 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
VPS39Q96JC1 AL033519.1-201ENST00000407266 307 ntBASIC6.21□□□□□ -1.42
VPS39Q96JC1 AC002127.1-201ENST00000421305 225 ntBASIC6.21□□□□□ -1.42
VPS39Q96JC1 AL160275.1-201ENST00000423632 476 ntAPPRIS P1 TSL 2 BASIC6.21□□□□□ -1.42
VPS39Q96JC1 RPL34P27-201ENST00000428810 349 ntBASIC6.21□□□□□ -1.42
VPS39Q96JC1 LHFPL3-AS1-204ENST00000433514 748 ntTSL 2 BASIC6.21□□□□□ -1.42
VPS39Q96JC1 SERPINA7P1-201ENST00000443077 631 ntBASIC6.21□□□□□ -1.42
VPS39Q96JC1 WDR82P2-201ENST00000444540 928 ntBASIC6.21□□□□□ -1.42
VPS39Q96JC1 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC6.21□□□□□ -1.42
VPS39Q96JC1 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
VPS39Q96JC1 MTND6P5-201ENST00000448266 512 ntBASIC6.21□□□□□ -1.42
VPS39Q96JC1 AC009518.1-201ENST00000452219 559 ntTSL 4 BASIC6.21□□□□□ -1.42
VPS39Q96JC1 AL034369.1-201ENST00000453808 477 ntBASIC6.21□□□□□ -1.42
VPS39Q96JC1 AC073594.1-201ENST00000462065 364 ntBASIC6.21□□□□□ -1.42
VPS39Q96JC1 AP003385.3-201ENST00000472498 287 ntBASIC6.21□□□□□ -1.42
VPS39Q96JC1 RN7SL326P-201ENST00000477493 296 ntBASIC6.21□□□□□ -1.42
VPS39Q96JC1 RAB7A-205ENST00000485280 507 ntTSL 3 BASIC6.21□□□□□ -1.42
VPS39Q96JC1 AC012123.2-201ENST00000485809 248 ntBASIC6.21□□□□□ -1.42
VPS39Q96JC1 AC008945.1-201ENST00000505144 499 ntBASIC6.21□□□□□ -1.42
VPS39Q96JC1 AC011396.2-201ENST00000515598 582 ntTSL 3 BASIC6.21□□□□□ -1.42
VPS39Q96JC1 KCTD9P6-201ENST00000522306 950 ntBASIC6.21□□□□□ -1.42
VPS39Q96JC1 OR6M2P-201ENST00000529831 871 ntBASIC6.21□□□□□ -1.42
VPS39Q96JC1 AC079600.3-201ENST00000547898 447 ntTSL 5 BASIC6.21□□□□□ -1.42
VPS39Q96JC1 UBE2N-204ENST00000549833 960 ntTSL 3 BASIC6.21□□□□□ -1.42
VPS39Q96JC1 AL161757.3-201ENST00000555316 807 ntTSL 3 BASIC6.21□□□□□ -1.42
VPS39Q96JC1 AC013640.1-201ENST00000565366 565 ntTSL 3 BASIC6.21□□□□□ -1.42
VPS39Q96JC1 AC010547.7-201ENST00000570323 333 ntBASIC6.21□□□□□ -1.42
VPS39Q96JC1 AC027796.1-201ENST00000575593 512 ntBASIC6.21□□□□□ -1.42
VPS39Q96JC1 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC6.21□□□□□ -1.42
VPS39Q96JC1 AC022001.1-201ENST00000605193 268 ntBASIC6.21□□□□□ -1.42
VPS39Q96JC1 AL357153.4-201ENST00000620487 1016 ntBASIC6.21□□□□□ -1.42
VPS39Q96JC1 AC124017.1-201ENST00000508112 1594 ntTSL 5 BASIC6.21□□□□□ -1.42
VPS39Q96JC1 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
VPS39Q96JC1 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.42
VPS39Q96JC1 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
VPS39Q96JC1 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
VPS39Q96JC1 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC6.21□□□□□ -1.42
VPS39Q96JC1 CADM2-202ENST00000405615 1314 ntAPPRIS P3 TSL 1 (best) BASIC6.21□□□□□ -1.42
VPS39Q96JC1 MSL3P1-202ENST00000440028 1468 ntBASIC6.21□□□□□ -1.42
VPS39Q96JC1 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.42
VPS39Q96JC1 BIRC3-207ENST00000615299 4342 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.42
VPS39Q96JC1 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
VPS39Q96JC1 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
VPS39Q96JC1 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
VPS39Q96JC1 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC6.2□□□□□ -1.42
VPS39Q96JC1 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC6.2□□□□□ -1.42
VPS39Q96JC1 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC6.2□□□□□ -1.42
VPS39Q96JC1 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC6.2□□□□□ -1.42
VPS39Q96JC1 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
VPS39Q96JC1 CLEC12A-202ENST00000350667 699 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
VPS39Q96JC1 SNORA43.1-201ENST00000364863 140 ntBASIC6.2□□□□□ -1.42
VPS39Q96JC1 RNA5-8SP5-201ENST00000365304 152 ntBASIC6.2□□□□□ -1.42
VPS39Q96JC1 SNORD94-201ENST00000386037 137 ntBASIC6.2□□□□□ -1.42
VPS39Q96JC1 RPL23AP17-201ENST00000401064 499 ntBASIC6.2□□□□□ -1.42
VPS39Q96JC1 UBTFL2-201ENST00000411859 1191 ntBASIC6.2□□□□□ -1.42
VPS39Q96JC1 NR1I3-208ENST00000412844 989 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
VPS39Q96JC1 DHFRP2-201ENST00000414224 547 ntBASIC6.2□□□□□ -1.42
VPS39Q96JC1 RPL21P50-201ENST00000417698 477 ntBASIC6.2□□□□□ -1.42
VPS39Q96JC1 RPS7P14-201ENST00000426405 583 ntBASIC6.2□□□□□ -1.42
VPS39Q96JC1 AL354707.3-201ENST00000427308 331 ntBASIC6.2□□□□□ -1.42
VPS39Q96JC1 GTF3AP6-201ENST00000432585 986 ntBASIC6.2□□□□□ -1.42
VPS39Q96JC1 AL445623.1-201ENST00000440888 237 ntTSL 3 BASIC6.2□□□□□ -1.42
VPS39Q96JC1 AL445991.1-201ENST00000450381 475 ntBASIC6.2□□□□□ -1.42
VPS39Q96JC1 L29074.1-201ENST00000456072 534 ntTSL 5 BASIC6.2□□□□□ -1.42
VPS39Q96JC1 AL356157.1-201ENST00000456722 732 ntTSL 3 BASIC6.2□□□□□ -1.42
VPS39Q96JC1 RN7SL502P-201ENST00000481857 290 ntBASIC6.2□□□□□ -1.42
VPS39Q96JC1 AC010168.1-201ENST00000501178 657 ntTSL 3 BASIC6.2□□□□□ -1.42
VPS39Q96JC1 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC6.2□□□□□ -1.42
VPS39Q96JC1 CYP4F27P-201ENST00000514557 494 ntBASIC6.2□□□□□ -1.42
VPS39Q96JC1 AC008429.4-201ENST00000521201 182 ntBASIC6.2□□□□□ -1.42
VPS39Q96JC1 LINC00944-204ENST00000544499 366 ntTSL 5 BASIC6.2□□□□□ -1.42
VPS39Q96JC1 AC037479.1-201ENST00000558361 625 ntBASIC6.2□□□□□ -1.42
VPS39Q96JC1 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC6.2□□□□□ -1.42
VPS39Q96JC1 GLYATL1P2-202ENST00000588046 902 ntBASIC6.2□□□□□ -1.42
VPS39Q96JC1 AC020916.2-201ENST00000591242 360 ntBASIC6.2□□□□□ -1.42
VPS39Q96JC1 AC125494.2-201ENST00000602431 657 ntBASIC6.2□□□□□ -1.42
VPS39Q96JC1 AL390877.1-201ENST00000605704 214 ntBASIC6.2□□□□□ -1.42
VPS39Q96JC1 LIPF-205ENST00000608620 1290 ntTSL 2 BASIC6.2□□□□□ -1.42
VPS39Q96JC1 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC6.2□□□□□ -1.42
VPS39Q96JC1 AC244196.4-201ENST00000611787 392 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
VPS39Q96JC1 OR1N2-202ENST00000616791 993 ntAPPRIS P2 BASIC6.2□□□□□ -1.42
VPS39Q96JC1 AC099329.1-203ENST00000629885 767 ntTSL 5 BASIC6.2□□□□□ -1.42
VPS39Q96JC1 SH3BGRL-201ENST00000373212 1923 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 85 ms