Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 REST-201ENST00000309042 7300 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
SHROOM4Q9ULL8 CYP3A5-202ENST00000339843 3320 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
SHROOM4Q9ULL8 AC010894.3-202ENST00000412835 1405 ntTSL 2 BASIC11.72□□□□□ -0.53
SHROOM4Q9ULL8 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC11.72□□□□□ -0.53
SHROOM4Q9ULL8 ZNF562-202ENST00000453372 2111 ntAPPRIS P3 TSL 3 BASIC11.72□□□□□ -0.53
SHROOM4Q9ULL8 LINC01903-201ENST00000580659 2149 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
SHROOM4Q9ULL8 KIAA0586-201ENST00000261244 4807 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
SHROOM4Q9ULL8 FAM160A1-203ENST00000505231 4156 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
SHROOM4Q9ULL8 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
SHROOM4Q9ULL8 BIN2P1-201ENST00000504996 1530 ntBASIC11.72□□□□□ -0.53
SHROOM4Q9ULL8 NAT1-209ENST00000541942 1948 ntAPPRIS P1 TSL 3 BASIC11.71□□□□□ -0.53
SHROOM4Q9ULL8 IL31RA-202ENST00000354961 2658 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
SHROOM4Q9ULL8 ZNF474-201ENST00000296600 1964 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
SHROOM4Q9ULL8 NFIB-218ENST00000636432 1953 ntTSL 5 BASIC11.71□□□□□ -0.53
SHROOM4Q9ULL8 REP15-201ENST00000310791 1078 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
SHROOM4Q9ULL8 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC11.71□□□□□ -0.53
SHROOM4Q9ULL8 LINC01780-202ENST00000457683 391 ntTSL 3 BASIC11.71□□□□□ -0.53
SHROOM4Q9ULL8 RN7SL329P-201ENST00000467740 299 ntBASIC11.71□□□□□ -0.53
SHROOM4Q9ULL8 AC106800.3-201ENST00000511389 308 ntBASIC11.71□□□□□ -0.53
SHROOM4Q9ULL8 OR10G5P-201ENST00000532733 358 ntBASIC11.71□□□□□ -0.53
SHROOM4Q9ULL8 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC11.71□□□□□ -0.53
SHROOM4Q9ULL8 AC009120.3-201ENST00000563335 499 ntBASIC11.71□□□□□ -0.53
SHROOM4Q9ULL8 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC11.71□□□□□ -0.53
SHROOM4Q9ULL8 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC11.71□□□□□ -0.53
SHROOM4Q9ULL8 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC11.71□□□□□ -0.53
SHROOM4Q9ULL8 OR7A1P-202ENST00000641542 1158 ntBASIC11.71□□□□□ -0.53
SHROOM4Q9ULL8 SYTL5-201ENST00000297875 4722 ntTSL 5 BASIC11.71□□□□□ -0.53
SHROOM4Q9ULL8 SLC12A1-202ENST00000380993 4707 ntAPPRIS P3 TSL 5 BASIC11.71□□□□□ -0.53
SHROOM4Q9ULL8 CCR9-204ENST00000422395 1331 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
SHROOM4Q9ULL8 TMEM68-219ENST00000617977 4512 ntTSL 5 BASIC11.71□□□□□ -0.53
SHROOM4Q9ULL8 TCF7L2-220ENST00000543371 4037 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
SHROOM4Q9ULL8 LINC00284-201ENST00000423211 3208 ntTSL 2 BASIC11.71□□□□□ -0.54
SHROOM4Q9ULL8 HEATR1-202ENST00000366581 6538 ntTSL 5 BASIC11.71□□□□□ -0.54
SHROOM4Q9ULL8 NKRF-204ENST00000542113 3351 ntTSL 3 BASIC11.71□□□□□ -0.54
SHROOM4Q9ULL8 FCGR1B-210ENST00000623603 1581 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.54
SHROOM4Q9ULL8 XKRY2-202ENST00000623874 1581 ntBASIC11.71□□□□□ -0.54
SHROOM4Q9ULL8 XKRY-202ENST00000624960 1581 ntBASIC11.71□□□□□ -0.54
SHROOM4Q9ULL8 AC025263.1-201ENST00000501387 2538 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
SHROOM4Q9ULL8 PAK5-201ENST00000353224 4500 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
SHROOM4Q9ULL8 ATP2B4-204ENST00000367218 8918 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
SHROOM4Q9ULL8 AC022325.1-201ENST00000502748 2199 ntBASIC11.71□□□□□ -0.54
SHROOM4Q9ULL8 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC11.7□□□□□ -0.54
SHROOM4Q9ULL8 SNORA64.1-201ENST00000362600 132 ntBASIC11.7□□□□□ -0.54
SHROOM4Q9ULL8 RNU1-134P-201ENST00000362935 165 ntBASIC11.7□□□□□ -0.54
SHROOM4Q9ULL8 RNU1-19P-201ENST00000363306 165 ntBASIC11.7□□□□□ -0.54
SHROOM4Q9ULL8 COX7B2-202ENST00000396533 617 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
SHROOM4Q9ULL8 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC11.7□□□□□ -0.54
SHROOM4Q9ULL8 RN7SKP161-201ENST00000411110 305 ntBASIC11.7□□□□□ -0.54
SHROOM4Q9ULL8 Y_RNA.625-201ENST00000411256 107 ntBASIC11.7□□□□□ -0.54
SHROOM4Q9ULL8 RPS27P18-201ENST00000431701 247 ntBASIC11.7□□□□□ -0.54
SHROOM4Q9ULL8 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC11.7□□□□□ -0.54
SHROOM4Q9ULL8 AL359551.1-201ENST00000442726 2900 ntTSL 2 BASIC11.7□□□□□ -0.54
SHROOM4Q9ULL8 AC012213.2-201ENST00000562917 4597 ntBASIC11.7□□□□□ -0.54
SHROOM4Q9ULL8 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
SHROOM4Q9ULL8 RPGRIP1L-202ENST00000379925 5297 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
SHROOM4Q9ULL8 SSH2-204ENST00000540801 4538 ntAPPRIS ALT2 TSL 2 BASIC11.7□□□□□ -0.54
SHROOM4Q9ULL8 IFIT1-202ENST00000546318 4613 ntTSL 3 BASIC11.7□□□□□ -0.54
SHROOM4Q9ULL8 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC11.7□□□□□ -0.54
SHROOM4Q9ULL8 ABCA1-202ENST00000374736 10494 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
SHROOM4Q9ULL8 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
SHROOM4Q9ULL8 MAP3K7CL-209ENST00000399947 2003 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
SHROOM4Q9ULL8 AC105749.1-201ENST00000631338 2008 ntBASIC11.7□□□□□ -0.54
SHROOM4Q9ULL8 AL442071.1-201ENST00000289890 558 ntTSL 3 BASIC11.7□□□□□ -0.54
SHROOM4Q9ULL8 TCEAL8-201ENST00000360000 1131 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
SHROOM4Q9ULL8 TCEAL8-202ENST00000372685 1222 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
SHROOM4Q9ULL8 SNORA70-201ENST00000384436 135 ntBASIC11.7□□□□□ -0.54
SHROOM4Q9ULL8 RPS7P8-201ENST00000418311 581 ntBASIC11.7□□□□□ -0.54
SHROOM4Q9ULL8 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC11.7□□□□□ -0.54
SHROOM4Q9ULL8 AC245884.2-201ENST00000426257 404 ntBASIC11.7□□□□□ -0.54
SHROOM4Q9ULL8 AL133465.1-201ENST00000432942 512 ntTSL 3 BASIC11.7□□□□□ -0.54
SHROOM4Q9ULL8 PPIAP10-201ENST00000438675 458 ntBASIC11.7□□□□□ -0.54
SHROOM4Q9ULL8 AC011124.1-204ENST00000522265 562 ntTSL 4 BASIC11.7□□□□□ -0.54
SHROOM4Q9ULL8 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC11.7□□□□□ -0.54
SHROOM4Q9ULL8 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC11.7□□□□□ -0.54
SHROOM4Q9ULL8 AC092944.2-201ENST00000605443 889 ntBASIC11.7□□□□□ -0.54
SHROOM4Q9ULL8 AC079395.2-201ENST00000610982 737 ntBASIC11.7□□□□□ -0.54
SHROOM4Q9ULL8 AC037198.3-201ENST00000616754 526 ntBASIC11.7□□□□□ -0.54
SHROOM4Q9ULL8 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC11.7□□□□□ -0.54
SHROOM4Q9ULL8 SYTL5-202ENST00000456733 4704 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
SHROOM4Q9ULL8 ADGRL3-206ENST00000507164 4982 ntTSL 5 BASIC11.69□□□□□ -0.54
SHROOM4Q9ULL8 SLC35E3-202ENST00000398004 17791 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
SHROOM4Q9ULL8 KIF27-202ENST00000334204 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
SHROOM4Q9ULL8 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC11.69□□□□□ -0.54
SHROOM4Q9ULL8 CDC7-201ENST00000234626 3173 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
SHROOM4Q9ULL8 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC11.69□□□□□ -0.54
SHROOM4Q9ULL8 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC11.69□□□□□ -0.54
SHROOM4Q9ULL8 OR11H13P-201ENST00000359695 979 ntBASIC11.69□□□□□ -0.54
SHROOM4Q9ULL8 TEX38-202ENST00000415500 566 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
SHROOM4Q9ULL8 RANP2-201ENST00000456833 229 ntBASIC11.69□□□□□ -0.54
SHROOM4Q9ULL8 AC114982.2-201ENST00000461396 358 ntBASIC11.69□□□□□ -0.54
SHROOM4Q9ULL8 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC11.69□□□□□ -0.54
SHROOM4Q9ULL8 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC11.69□□□□□ -0.54
SHROOM4Q9ULL8 OR8G5-202ENST00000641707 1156 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
SHROOM4Q9ULL8 ATM-201ENST00000278616 13147 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
SHROOM4Q9ULL8 SNW1-204ENST00000554775 1687 ntTSL 5 BASIC11.69□□□□□ -0.54
SHROOM4Q9ULL8 Z98257.1-202ENST00000431027 2493 ntTSL 5 BASIC11.68□□□□□ -0.54
SHROOM4Q9ULL8 BNC1-202ENST00000569704 3169 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
SHROOM4Q9ULL8 BCORP1-202ENST00000441139 3461 ntTSL 2 BASIC11.68□□□□□ -0.54
SHROOM4Q9ULL8 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC11.68□□□□□ -0.54
SHROOM4Q9ULL8 FMN1-211ENST00000561249 4251 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms