Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 RAD23BP2-201ENST00000416003 1207 ntBASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 RPL23AP18-201ENST00000416139 468 ntBASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 AL583805.2-201ENST00000418571 486 ntTSL 5 BASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 AC016716.2-201ENST00000418621 486 ntTSL 3 BASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 AC104076.1-201ENST00000428080 265 ntTSL 3 BASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 OR1M1-201ENST00000429566 1035 ntAPPRIS P1 BASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 AP001628.1-201ENST00000431150 285 ntTSL 5 BASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 SLC6A13-202ENST00000436453 1101 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 LSM3P3-201ENST00000436601 306 ntBASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 RPL29P7-201ENST00000440227 457 ntBASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 AL136455.1-201ENST00000441083 1240 ntBASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 AL033379.1-201ENST00000442184 481 ntTSL 3 BASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 TRMT2B-AS1-201ENST00000443801 205 ntTSL 5 BASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 EXOSC3P1-201ENST00000448649 500 ntBASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 AL035420.1-202ENST00000450129 357 ntTSL 3 BASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 AL358612.1-201ENST00000452911 481 ntTSL 3 BASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 AC090114.3-201ENST00000479267 829 ntBASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 TECRP2-201ENST00000503270 928 ntBASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 AC104109.4-202ENST00000518409 1082 ntTSL 2 BASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 AC011333.1-201ENST00000520587 436 ntTSL 3 BASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 OR10D4P-201ENST00000525892 951 ntBASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 AL591767.3-201ENST00000554632 525 ntBASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 GLRXP2-201ENST00000555594 321 ntBASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 AC012414.2-201ENST00000559474 187 ntBASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 AC018946.1-201ENST00000560578 458 ntTSL 5 BASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 AC138207.8-206ENST00000580053 637 ntTSL 5 BASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 EXOSC3P2-201ENST00000594464 497 ntBASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 AC091193.1-201ENST00000604640 448 ntBASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 KATNBL1P5-201ENST00000605015 517 ntBASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 MIR663AHG-237ENST00000615682 1030 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 PDE4DIP-241ENST00000616206 874 ntTSL 2 BASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 AC084035.1-201ENST00000634543 607 ntBASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 AP004289.1-201ENST00000436307 2205 ntBASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 CD53-201ENST00000271324 1505 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 C16orf62-202ENST00000417362 3115 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 PWRN1-212ENST00000569908 1435 ntBASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 PCLO-203ENST00000423517 17147 ntTSL 5 BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 AC010168.2-201ENST00000562691 5428 ntBASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 SELE-203ENST00000367775 3389 ntTSL 5 BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 MTND4P8-201ENST00000514997 1362 ntBASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 STAG1-201ENST00000236698 5951 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 LINC01362-202ENST00000452901 1712 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 NLRP4-203ENST00000587891 3201 ntTSL 2 BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 CDKAL1-204ENST00000613575 1673 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 MLIP-206ENST00000502396 3102 ntAPPRIS ALT2 TSL 2 BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 CCL1-201ENST00000225842 592 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 HESX1-201ENST00000295934 981 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 CLEC4A-202ENST00000345999 841 ntTSL 5 BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 OR11H13P-201ENST00000359695 979 ntBASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 Y_RNA.169-201ENST00000363745 96 ntBASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 AL132671.1-201ENST00000415736 308 ntTSL 3 BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 CLCN3P1-201ENST00000423965 1017 ntBASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 AC134879.1-201ENST00000426062 394 ntBASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 AL513329.1-201ENST00000426575 657 ntTSL 3 BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 FTLP17-201ENST00000432567 525 ntBASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 AC245047.2-201ENST00000441060 530 ntBASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 HSFY3P-201ENST00000444242 1191 ntBASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 AL139350.1-201ENST00000448825 408 ntTSL 3 BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 LINC01431-203ENST00000452395 505 ntTSL 2 BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 HGF-207ENST00000453018 721 ntTSL 3 BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 AL391422.2-202ENST00000454396 347 ntTSL 5 BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 PSMA6P2-201ENST00000457574 686 ntBASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 AC096743.1-201ENST00000485172 319 ntBASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 AC113383.1-205ENST00000502253 792 ntTSL 2 BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 ENPP7P3-201ENST00000509123 241 ntBASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 AC239584.1-201ENST00000510419 732 ntTSL 5 BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 AC100854.1-201ENST00000520351 341 ntBASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 OXR1-212ENST00000521592 993 ntTSL 5 BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 SOX9-AS1-211ENST00000533179 460 ntTSL 3 BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 IDH3A-223ENST00000561366 389 ntTSL 3 BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 AC009097.3-201ENST00000563557 1018 ntBASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 AC005323.1-203ENST00000585303 566 ntTSL 5 BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 AC011498.1-203ENST00000589066 359 ntTSL 3 BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 MRPS35P3-201ENST00000603189 709 ntBASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 AL160237.3-201ENST00000604114 1013 ntBASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 AC009032.1-201ENST00000617574 431 ntBASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 AL356596.1-201ENST00000624230 379 ntBASIC7.87□□□□□ -1.15
CCDC39Q9UFE4 SNX18P10-201ENST00000625014 519 ntBASIC7.87□□□□□ -1.15
Retrieved 100 of 98,524 protein–RNA pairs in 128.1 ms