Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC5.46□□□□□ -1.53
NKX3-1Q99801 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
NKX3-1Q99801 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC5.46□□□□□ -1.53
NKX3-1Q99801 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
NKX3-1Q99801 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
NKX3-1Q99801 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC5.46□□□□□ -1.54
NKX3-1Q99801 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC5.46□□□□□ -1.54
NKX3-1Q99801 OSBPL9-206ENST00000453295 2842 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
NKX3-1Q99801 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
NKX3-1Q99801 BX284613.1-201ENST00000452221 1641 ntBASIC5.46□□□□□ -1.54
NKX3-1Q99801 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
NKX3-1Q99801 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC5.46□□□□□ -1.54
NKX3-1Q99801 CLDN10-201ENST00000299339 949 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
NKX3-1Q99801 OR5B2-201ENST00000302581 1049 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
NKX3-1Q99801 PAGE2B-201ENST00000374971 493 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
NKX3-1Q99801 MIR191-201ENST00000384873 92 ntBASIC5.46□□□□□ -1.54
NKX3-1Q99801 F9-202ENST00000394090 1272 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
NKX3-1Q99801 RN7SKP38-201ENST00000410782 309 ntBASIC5.46□□□□□ -1.54
NKX3-1Q99801 AL138828.1-204ENST00000413745 898 ntTSL 5 BASIC5.46□□□□□ -1.54
NKX3-1Q99801 AC002511.2-201ENST00000413796 450 ntTSL 2 BASIC5.46□□□□□ -1.54
NKX3-1Q99801 AC106900.1-201ENST00000418620 456 ntTSL 5 BASIC5.46□□□□□ -1.54
NKX3-1Q99801 AC007966.1-201ENST00000421998 1179 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
NKX3-1Q99801 TRGV7-201ENST00000427089 353 ntBASIC5.46□□□□□ -1.54
NKX3-1Q99801 AL606534.4-201ENST00000427176 792 ntTSL 5 BASIC5.46□□□□□ -1.54
NKX3-1Q99801 FBXW12-203ENST00000436231 1117 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
NKX3-1Q99801 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC5.46□□□□□ -1.54
NKX3-1Q99801 AC108488.1-202ENST00000439547 482 ntTSL 3 BASIC5.46□□□□□ -1.54
NKX3-1Q99801 RPL12P49-201ENST00000441100 121 ntBASIC5.46□□□□□ -1.54
NKX3-1Q99801 AL355390.2-201ENST00000446691 880 ntTSL 5 BASIC5.46□□□□□ -1.54
NKX3-1Q99801 LIX1L-AS1-206ENST00000447686 846 ntTSL 2 BASIC5.46□□□□□ -1.54
NKX3-1Q99801 KF459542.1-201ENST00000450908 553 ntBASIC5.46□□□□□ -1.54
NKX3-1Q99801 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC5.46□□□□□ -1.54
NKX3-1Q99801 AC073594.1-201ENST00000462065 364 ntBASIC5.46□□□□□ -1.54
NKX3-1Q99801 AC084024.1-201ENST00000476186 621 ntTSL 5 BASIC5.46□□□□□ -1.54
NKX3-1Q99801 OR9A1P-202ENST00000484361 945 ntBASIC5.46□□□□□ -1.54
NKX3-1Q99801 SNRPCP11-201ENST00000492453 205 ntBASIC5.46□□□□□ -1.54
NKX3-1Q99801 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC5.46□□□□□ -1.54
NKX3-1Q99801 AC004063.1-201ENST00000508358 547 ntTSL 4 BASIC5.46□□□□□ -1.54
NKX3-1Q99801 AC026785.3-201ENST00000511182 285 ntTSL 2 BASIC5.46□□□□□ -1.54
NKX3-1Q99801 RNU4-18P-201ENST00000516751 149 ntBASIC5.46□□□□□ -1.54
NKX3-1Q99801 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC5.46□□□□□ -1.54
NKX3-1Q99801 AP003100.1-201ENST00000524772 832 ntTSL 3 BASIC5.46□□□□□ -1.54
NKX3-1Q99801 AF235103.1-201ENST00000530223 439 ntTSL 3 BASIC5.46□□□□□ -1.54
NKX3-1Q99801 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC5.46□□□□□ -1.54
NKX3-1Q99801 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC5.46□□□□□ -1.54
NKX3-1Q99801 AC005519.1-201ENST00000554490 601 ntBASIC5.46□□□□□ -1.54
NKX3-1Q99801 OR4C49P-201ENST00000563891 900 ntBASIC5.46□□□□□ -1.54
NKX3-1Q99801 AC026462.3-201ENST00000565153 557 ntTSL 2 BASIC5.46□□□□□ -1.54
NKX3-1Q99801 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC5.46□□□□□ -1.54
NKX3-1Q99801 LINC01841-201ENST00000586698 573 ntTSL 4 BASIC5.46□□□□□ -1.54
NKX3-1Q99801 HNRNPA3P9-201ENST00000604913 979 ntBASIC5.46□□□□□ -1.54
NKX3-1Q99801 AL021368.3-201ENST00000607119 578 ntBASIC5.46□□□□□ -1.54
NKX3-1Q99801 AL137000.1-201ENST00000610528 1244 ntBASIC5.46□□□□□ -1.54
NKX3-1Q99801 MIR6885-201ENST00000612241 66 ntBASIC5.46□□□□□ -1.54
NKX3-1Q99801 AL391095.2-201ENST00000615228 378 ntTSL 3 BASIC5.46□□□□□ -1.54
NKX3-1Q99801 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC5.46□□□□□ -1.54
NKX3-1Q99801 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
NKX3-1Q99801 GIF-201ENST00000257248 1518 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
NKX3-1Q99801 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
NKX3-1Q99801 DCN-218ENST00000551354 2924 ntTSL 3 BASIC5.46□□□□□ -1.54
NKX3-1Q99801 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC5.46□□□□□ -1.54
NKX3-1Q99801 TLR10-208ENST00000622002 3673 ntAPPRIS P1 TSL 3 BASIC5.46□□□□□ -1.54
NKX3-1Q99801 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
NKX3-1Q99801 CTTNBP2NL-201ENST00000271277 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
NKX3-1Q99801 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
NKX3-1Q99801 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
NKX3-1Q99801 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC5.45□□□□□ -1.54
NKX3-1Q99801 N4BP2L1-209ENST00000530622 1897 ntTSL 5 BASIC5.45□□□□□ -1.54
NKX3-1Q99801 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
NKX3-1Q99801 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC5.45□□□□□ -1.54
NKX3-1Q99801 UEVLD-202ENST00000320750 1799 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
NKX3-1Q99801 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC5.45□□□□□ -1.54
NKX3-1Q99801 OR4K5-201ENST00000315915 1078 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
NKX3-1Q99801 ZNF28-201ENST00000339844 650 ntTSL 4 BASIC5.45□□□□□ -1.54
NKX3-1Q99801 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC5.45□□□□□ -1.54
NKX3-1Q99801 AL353133.1-201ENST00000407695 401 ntBASIC5.45□□□□□ -1.54
NKX3-1Q99801 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC5.45□□□□□ -1.54
NKX3-1Q99801 AL391811.1-201ENST00000416908 423 ntTSL 3 BASIC5.45□□□□□ -1.54
NKX3-1Q99801 PVALB-204ENST00000417718 569 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
NKX3-1Q99801 AC007562.1-201ENST00000421819 517 ntBASIC5.45□□□□□ -1.54
NKX3-1Q99801 HMGB1P32-201ENST00000425971 565 ntBASIC5.45□□□□□ -1.54
NKX3-1Q99801 GTF2IP14-201ENST00000441415 586 ntBASIC5.45□□□□□ -1.54
NKX3-1Q99801 AL031681.1-201ENST00000443304 400 ntBASIC5.45□□□□□ -1.54
NKX3-1Q99801 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC5.45□□□□□ -1.54
NKX3-1Q99801 AC023274.2-201ENST00000445264 521 ntBASIC5.45□□□□□ -1.54
NKX3-1Q99801 UBBP5-201ENST00000446970 266 ntBASIC5.45□□□□□ -1.54
NKX3-1Q99801 C2orf80-207ENST00000453017 722 ntTSL 3 BASIC5.45□□□□□ -1.54
NKX3-1Q99801 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC5.45□□□□□ -1.54
NKX3-1Q99801 AC096746.1-201ENST00000501965 1042 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
NKX3-1Q99801 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC5.45□□□□□ -1.54
NKX3-1Q99801 AC093599.1-201ENST00000515232 562 ntTSL 4 BASIC5.45□□□□□ -1.54
NKX3-1Q99801 RN7SKP248-201ENST00000516278 305 ntBASIC5.45□□□□□ -1.54
NKX3-1Q99801 COX6B1P4-201ENST00000519826 484 ntBASIC5.45□□□□□ -1.54
NKX3-1Q99801 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC5.45□□□□□ -1.54
NKX3-1Q99801 NAV2-IT1-201ENST00000528204 506 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
NKX3-1Q99801 PRH1-204ENST00000539853 837 ntAPPRIS ALT2 TSL 5 BASIC5.45□□□□□ -1.54
NKX3-1Q99801 AC116158.2-201ENST00000559544 553 ntTSL 4 BASIC5.45□□□□□ -1.54
NKX3-1Q99801 AC021483.1-201ENST00000560760 539 ntTSL 3 BASIC5.45□□□□□ -1.54
NKX3-1Q99801 AC009120.3-201ENST00000563335 499 ntBASIC5.45□□□□□ -1.54
NKX3-1Q99801 AC007496.2-201ENST00000564801 547 ntTSL 4 BASIC5.45□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms