Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
HDDC3Q8N4P3 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC6.4□□□□□ -1.39
HDDC3Q8N4P3 CYP3A5-202ENST00000339843 3320 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
HDDC3Q8N4P3 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC6.4□□□□□ -1.39
HDDC3Q8N4P3 ZNF836-201ENST00000322146 2811 ntAPPRIS ALT2 TSL 5 BASIC6.4□□□□□ -1.39
HDDC3Q8N4P3 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC6.4□□□□□ -1.39
HDDC3Q8N4P3 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC6.4□□□□□ -1.39
HDDC3Q8N4P3 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 BBOX1-205ENST00000529202 1725 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 AC105114.1-201ENST00000624795 1862 ntBASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 ADAMTS9-AS2-203ENST00000481312 1970 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 GSTA5-201ENST00000284562 845 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 POU1F1-201ENST00000344265 1149 ntTSL 5 BASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 AL023284.3-201ENST00000407767 334 ntBASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 AC066692.1-201ENST00000421721 457 ntBASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 CHEK2P5-201ENST00000423877 246 ntBASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 LINC01291-203ENST00000435984 565 ntTSL 3 BASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 AC073109.1-201ENST00000445066 978 ntBASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 AC097463.1-201ENST00000447288 481 ntBASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 PPIAP27-201ENST00000453800 265 ntBASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 AF015262.1-201ENST00000455028 698 ntTSL 3 BASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 AC023194.2-201ENST00000465398 406 ntBASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 B4GALT4-AS1-201ENST00000470790 544 ntTSL 5 BASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 PPIAP19-201ENST00000486414 492 ntBASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 SCGB3A2-202ENST00000504320 440 ntTSL 3 BASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 AC002456.2-201ENST00000509356 380 ntBASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 KHDC1P1-201ENST00000511053 508 ntBASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 SETP21-201ENST00000514799 892 ntBASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 AC093599.1-201ENST00000515232 562 ntTSL 4 BASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 AC090572.3-201ENST00000519041 804 ntTSL 3 BASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 AC016405.1-202ENST00000524348 758 ntTSL 3 BASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 AC127522.1-201ENST00000560531 751 ntTSL 2 BASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 MRPS21P8-201ENST00000569196 235 ntBASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 AC007639.1-201ENST00000577281 833 ntTSL 3 BASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 AC005332.4-201ENST00000592752 579 ntBASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 AC100767.2-201ENST00000604840 693 ntBASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 AL445647.2-201ENST00000615170 130 ntBASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 AC024884.1-201ENST00000620583 399 ntBASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 AC103703.1-201ENST00000634783 663 ntBASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 AL596275.2-208ENST00000641192 594 ntBASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 AL033543.1-201ENST00000623440 13454 ntBASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 DMXL1-215ENST00000539542 11236 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 RARSP1-201ENST00000542842 1418 ntBASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 GOLGB1-202ENST00000393667 11198 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 CACNA1E-210ENST00000621791 16171 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 AL136984.1-201ENST00000607611 1893 ntBASIC6.39□□□□□ -1.39
HDDC3Q8N4P3 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 TXNRD1-203ENST00000397736 3832 ntTSL 5 BASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 DAZ1-201ENST00000382510 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 AC027575.3-201ENST00000583058 2747 ntBASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 KCNJ15-201ENST00000328656 8399 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 RNA5SP178-201ENST00000410380 128 ntBASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 RN7SKP108-201ENST00000411367 328 ntBASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 AC084816.1-201ENST00000413794 565 ntTSL 4 BASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 CYCSP52-201ENST00000422857 310 ntBASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 RPL12P12-201ENST00000424633 501 ntBASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 VN1R96P-201ENST00000446052 858 ntBASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 AL133351.3-201ENST00000454998 193 ntBASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 OR4D12P-201ENST00000509361 911 ntBASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 MGC32805-204ENST00000509993 783 ntTSL 2 BASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 PRMT5P1-201ENST00000514351 598 ntBASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 RN7SKP35-201ENST00000517210 151 ntBASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 AC079905.1-201ENST00000549280 475 ntBASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 AC009087.1-201ENST00000561827 369 ntTSL 3 BASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 AC093525.4-201ENST00000562232 459 ntTSL 5 BASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 AP000842.3-201ENST00000564354 808 ntTSL 3 BASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 AC026992.2-201ENST00000570122 766 ntTSL 5 BASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 LINC00907-202ENST00000585639 915 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 AC139493.1-201ENST00000604368 397 ntBASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 AL132640.3-201ENST00000630473 177 ntBASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 TTC33-206ENST00000636863 1149 ntTSL 5 BASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 FLRT3-201ENST00000341420 3971 ntAPPRIS P1 TSL 2 BASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 OFD1P15Y-201ENST00000411536 1392 ntBASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 APOL6-201ENST00000409652 10121 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 USP37-203ENST00000415516 4516 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 LGI1-219ENST00000636155 1618 ntTSL 5 BASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 ICE2P1-201ENST00000512800 1849 ntBASIC6.38□□□□□ -1.39
HDDC3Q8N4P3 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms