Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ATAD1-202ENST00000328142 2939 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC6.29□□□□□ -1.4
COL28A1Q2UY09 ADGRB3-203ENST00000546190 4569 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL28A1Q2UY09 CADM2-202ENST00000405615 1314 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL28A1Q2UY09 MPP5-204ENST00000555925 5006 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
COL28A1Q2UY09 THAP12P8-201ENST00000447914 2115 ntBASIC6.28□□□□□ -1.4
COL28A1Q2UY09 OR52N1-202ENST00000641645 2545 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
COL28A1Q2UY09 ELMO1-202ENST00000396040 1982 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
COL28A1Q2UY09 GALNT5-201ENST00000259056 6171 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL28A1Q2UY09 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC6.28□□□□□ -1.4
COL28A1Q2UY09 RPS7-201ENST00000304921 786 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL28A1Q2UY09 TRIM55-203ENST00000350034 1177 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
COL28A1Q2UY09 XAGE5-202ENST00000375501 415 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
COL28A1Q2UY09 RNA5SP474-201ENST00000391234 90 ntBASIC6.28□□□□□ -1.4
COL28A1Q2UY09 RPL7P58-201ENST00000402913 758 ntBASIC6.28□□□□□ -1.4
COL28A1Q2UY09 Y_RNA.625-201ENST00000411256 107 ntBASIC6.28□□□□□ -1.4
COL28A1Q2UY09 PSMC1P2-201ENST00000423961 1204 ntBASIC6.28□□□□□ -1.4
COL28A1Q2UY09 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC6.28□□□□□ -1.4
COL28A1Q2UY09 AL606534.1-201ENST00000439562 694 ntTSL 3 BASIC6.28□□□□□ -1.4
COL28A1Q2UY09 KRTAP8-2P-201ENST00000440620 186 ntBASIC6.28□□□□□ -1.4
COL28A1Q2UY09 AC092801.1-201ENST00000443763 581 ntTSL 3 BASIC6.28□□□□□ -1.4
COL28A1Q2UY09 AC010240.2-201ENST00000445363 1205 ntBASIC6.28□□□□□ -1.4
COL28A1Q2UY09 RAD1P2-201ENST00000446414 663 ntBASIC6.28□□□□□ -1.4
COL28A1Q2UY09 UBBP5-201ENST00000446970 266 ntBASIC6.28□□□□□ -1.4
COL28A1Q2UY09 RNU7-157P-201ENST00000459600 66 ntBASIC6.28□□□□□ -1.4
COL28A1Q2UY09 RN7SL515P-201ENST00000463999 297 ntBASIC6.28□□□□□ -1.4
COL28A1Q2UY09 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC6.28□□□□□ -1.4
COL28A1Q2UY09 RN7SL273P-201ENST00000481561 299 ntBASIC6.28□□□□□ -1.4
COL28A1Q2UY09 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC6.28□□□□□ -1.4
COL28A1Q2UY09 AC025458.1-201ENST00000506046 166 ntBASIC6.28□□□□□ -1.4
COL28A1Q2UY09 AC091868.2-201ENST00000506717 556 ntTSL 3 BASIC6.28□□□□□ -1.4
COL28A1Q2UY09 MTND2P31-201ENST00000512602 616 ntBASIC6.28□□□□□ -1.4
COL28A1Q2UY09 AC092593.2-201ENST00000513866 913 ntBASIC6.28□□□□□ -1.4
COL28A1Q2UY09 CYCSP25-201ENST00000525280 316 ntBASIC6.28□□□□□ -1.4
COL28A1Q2UY09 TMEM106C-215ENST00000550552 776 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
COL28A1Q2UY09 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC6.28□□□□□ -1.4
COL28A1Q2UY09 AC018767.3-201ENST00000564185 481 ntTSL 3 BASIC6.28□□□□□ -1.4
COL28A1Q2UY09 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC6.28□□□□□ -1.4
COL28A1Q2UY09 AC138811.2-201ENST00000567078 764 ntAPPRIS P1 TSL 3 BASIC6.28□□□□□ -1.4
COL28A1Q2UY09 AC090651.1-201ENST00000567865 634 ntBASIC6.28□□□□□ -1.4
COL28A1Q2UY09 AC020978.7-201ENST00000575953 1187 ntBASIC6.28□□□□□ -1.4
COL28A1Q2UY09 AC133552.4-201ENST00000576103 676 ntBASIC6.28□□□□□ -1.4
COL28A1Q2UY09 AC103808.4-201ENST00000577258 391 ntTSL 3 BASIC6.28□□□□□ -1.4
COL28A1Q2UY09 AC020914.7-201ENST00000594477 545 ntBASIC6.28□□□□□ -1.4
COL28A1Q2UY09 EDRF1-AS1-214ENST00000622798 526 ntTSL 5 BASIC6.28□□□□□ -1.4
COL28A1Q2UY09 CCT5-215ENST00000625723 135 ntTSL 5 BASIC6.28□□□□□ -1.4
COL28A1Q2UY09 BABAM2-201ENST00000342045 1681 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL28A1Q2UY09 LINC01087-201ENST00000431979 3516 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
COL28A1Q2UY09 MTCO1P28-201ENST00000574177 1528 ntBASIC6.28□□□□□ -1.4
COL28A1Q2UY09 CLNK-204ENST00000515667 4180 ntAPPRIS ALT2 TSL 3 BASIC6.28□□□□□ -1.4
COL28A1Q2UY09 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL28A1Q2UY09 AMY1A-201ENST00000370083 1790 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL28A1Q2UY09 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC6.28□□□□□ -1.4
COL28A1Q2UY09 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
COL28A1Q2UY09 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL28A1Q2UY09 LINC01602-201ENST00000522992 2109 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
COL28A1Q2UY09 CYP4A22-206ENST00000619754 2351 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
COL28A1Q2UY09 N4BP2-201ENST00000261435 9744 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.41
COL28A1Q2UY09 YES1-203ENST00000577961 4554 ntTSL 5 BASIC6.27□□□□□ -1.41
COL28A1Q2UY09 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL28A1Q2UY09 ZNF131-201ENST00000306938 2400 ntAPPRIS P1 TSL 2 BASIC6.27□□□□□ -1.41
COL28A1Q2UY09 CENPJ-206ENST00000616936 5020 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
COL28A1Q2UY09 DDX18-201ENST00000263239 3796 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL28A1Q2UY09 ZC2HC1B-201ENST00000237275 1002 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL28A1Q2UY09 MGST2-201ENST00000265498 801 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL28A1Q2UY09 SNORA74A-201ENST00000364089 198 ntBASIC6.27□□□□□ -1.41
COL28A1Q2UY09 U3.25-201ENST00000391209 220 ntBASIC6.27□□□□□ -1.41
COL28A1Q2UY09 MTIF3-203ENST00000405591 889 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL28A1Q2UY09 RN7SKP271-201ENST00000410528 320 ntBASIC6.27□□□□□ -1.41
COL28A1Q2UY09 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC6.27□□□□□ -1.41
COL28A1Q2UY09 AC013268.2-201ENST00000420753 337 ntBASIC6.27□□□□□ -1.41
COL28A1Q2UY09 LINC00433-201ENST00000424165 888 ntTSL 2 BASIC6.27□□□□□ -1.41
COL28A1Q2UY09 NPM1P25-201ENST00000429734 854 ntBASIC6.27□□□□□ -1.41
COL28A1Q2UY09 AC116038.1-201ENST00000432250 408 ntTSL 3 BASIC6.27□□□□□ -1.41
COL28A1Q2UY09 AC068888.2-201ENST00000435621 536 ntTSL 3 BASIC6.27□□□□□ -1.41
COL28A1Q2UY09 MRPS21P3-201ENST00000436696 262 ntBASIC6.27□□□□□ -1.41
COL28A1Q2UY09 AL353768.1-201ENST00000439872 487 ntTSL 3 BASIC6.27□□□□□ -1.41
COL28A1Q2UY09 XKRYP6-201ENST00000440468 1116 ntBASIC6.27□□□□□ -1.41
COL28A1Q2UY09 XKRYP3-201ENST00000442113 1116 ntBASIC6.27□□□□□ -1.41
COL28A1Q2UY09 RPL6P30-201ENST00000443382 862 ntBASIC6.27□□□□□ -1.41
COL28A1Q2UY09 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC6.27□□□□□ -1.41
COL28A1Q2UY09 AC079612.2-201ENST00000446029 348 ntTSL 2 BASIC6.27□□□□□ -1.41
COL28A1Q2UY09 RPL23AP28-201ENST00000448062 470 ntBASIC6.27□□□□□ -1.41
COL28A1Q2UY09 AC083806.1-201ENST00000468934 316 ntBASIC6.27□□□□□ -1.41
COL28A1Q2UY09 RN7SL717P-201ENST00000478343 297 ntBASIC6.27□□□□□ -1.41
COL28A1Q2UY09 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC6.27□□□□□ -1.41
COL28A1Q2UY09 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC6.27□□□□□ -1.41
COL28A1Q2UY09 AC091849.1-201ENST00000509920 121 ntBASIC6.27□□□□□ -1.41
COL28A1Q2UY09 AC060775.1-201ENST00000518241 520 ntBASIC6.27□□□□□ -1.41
COL28A1Q2UY09 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC6.27□□□□□ -1.41
COL28A1Q2UY09 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC6.27□□□□□ -1.41
COL28A1Q2UY09 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
COL28A1Q2UY09 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC6.27□□□□□ -1.41
COL28A1Q2UY09 AC026956.1-201ENST00000558741 396 ntBASIC6.27□□□□□ -1.41
COL28A1Q2UY09 AC067805.1-201ENST00000559344 470 ntBASIC6.27□□□□□ -1.41
COL28A1Q2UY09 LINC00907-202ENST00000585639 915 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
COL28A1Q2UY09 AC023421.2-202ENST00000586213 547 ntTSL 3 BASIC6.27□□□□□ -1.41
COL28A1Q2UY09 SNORD96A-201ENST00000606577 79 ntBASIC6.27□□□□□ -1.41
COL28A1Q2UY09 AL021368.1-201ENST00000607490 540 ntBASIC6.27□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 134.4 ms