Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC7.54□□□□□ -1.2
SOX4Q06945 RPL7AP71-201ENST00000451120 739 ntBASIC7.54□□□□□ -1.2
SOX4Q06945 AC010878.1-201ENST00000456500 1047 ntBASIC7.54□□□□□ -1.2
SOX4Q06945 AL096803.1-201ENST00000456921 1021 ntBASIC7.54□□□□□ -1.2
SOX4Q06945 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC7.54□□□□□ -1.2
SOX4Q06945 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC7.54□□□□□ -1.2
SOX4Q06945 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC7.54□□□□□ -1.2
SOX4Q06945 RPL34P34-201ENST00000465389 354 ntBASIC7.54□□□□□ -1.2
SOX4Q06945 AC131233.1-201ENST00000479200 955 ntBASIC7.54□□□□□ -1.2
SOX4Q06945 AP005202.1-201ENST00000489915 867 ntBASIC7.54□□□□□ -1.2
SOX4Q06945 RPL5P11-201ENST00000498068 893 ntBASIC7.54□□□□□ -1.2
SOX4Q06945 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC7.54□□□□□ -1.2
SOX4Q06945 RNU6-1178P-201ENST00000516674 107 ntBASIC7.54□□□□□ -1.2
SOX4Q06945 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC7.54□□□□□ -1.2
SOX4Q06945 WBP2NL-210ENST00000543212 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC7.54□□□□□ -1.2
SOX4Q06945 APAF1-211ENST00000552268 1143 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
SOX4Q06945 LINC02307-201ENST00000553827 257 ntTSL 3 BASIC7.54□□□□□ -1.2
SOX4Q06945 AC134312.6-201ENST00000568587 444 ntTSL 5 BASIC7.54□□□□□ -1.2
SOX4Q06945 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC7.54□□□□□ -1.2
SOX4Q06945 AC010605.1-201ENST00000597303 797 ntTSL 2 BASIC7.54□□□□□ -1.2
SOX4Q06945 AC005479.3-201ENST00000602790 431 ntBASIC7.54□□□□□ -1.2
SOX4Q06945 AP000403.1-201ENST00000603349 851 ntBASIC7.54□□□□□ -1.2
SOX4Q06945 IGKV2OR2-7D-201ENST00000603664 304 ntBASIC7.54□□□□□ -1.2
SOX4Q06945 IGKV2OR2-7-201ENST00000604652 304 ntBASIC7.54□□□□□ -1.2
SOX4Q06945 AL450489.1-201ENST00000612071 468 ntBASIC7.54□□□□□ -1.2
SOX4Q06945 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC7.54□□□□□ -1.2
SOX4Q06945 AC091932.2-201ENST00000623014 291 ntBASIC7.54□□□□□ -1.2
SOX4Q06945 AC092656.1-203ENST00000624134 423 ntBASIC7.54□□□□□ -1.2
SOX4Q06945 AL008636.1-201ENST00000625038 1018 ntBASIC7.54□□□□□ -1.2
SOX4Q06945 LINC01588-202ENST00000528300 3208 ntTSL 2 BASIC7.54□□□□□ -1.2
SOX4Q06945 PDE4DIP-246ENST00000618462 8150 ntAPPRIS ALT2 TSL 1 (best) BASIC7.54□□□□□ -1.2
SOX4Q06945 DDX42-203ENST00000457800 3323 ntTSL 5 BASIC7.54□□□□□ -1.2
SOX4Q06945 HIVEP2-202ENST00000367603 9724 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
SOX4Q06945 RUNDC3A-AS1-202ENST00000588097 5203 ntTSL 5 BASIC7.54□□□□□ -1.2
SOX4Q06945 NCKAP1-202ENST00000361354 20347 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
SOX4Q06945 GTF2H3-201ENST00000228955 1472 ntTSL 2 BASIC7.54□□□□□ -1.2
SOX4Q06945 AP2B1-221ENST00000621914 5702 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
SOX4Q06945 NOVA1-204ENST00000465357 3573 ntAPPRIS ALT1 TSL 3 BASIC7.54□□□□□ -1.2
SOX4Q06945 LRIG3-202ENST00000379141 3667 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
SOX4Q06945 NRCAM-204ENST00000379028 6685 ntAPPRIS ALT2 TSL 5 BASIC7.54□□□□□ -1.2
SOX4Q06945 ZNF350-201ENST00000243644 2338 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
SOX4Q06945 ZFX-201ENST00000304543 2996 ntAPPRIS P1 TSL 5 BASIC7.53□□□□□ -1.2
SOX4Q06945 ZEB2-232ENST00000636026 5172 ntTSL 5 BASIC7.53□□□□□ -1.2
SOX4Q06945 ZNF300-204ENST00000427179 4155 ntTSL 2 BASIC7.53□□□□□ -1.2
SOX4Q06945 LSM8-204ENST00000424702 4030 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
SOX4Q06945 RUNX1T1-201ENST00000265814 7284 ntAPPRIS P3 TSL 5 BASIC7.53□□□□□ -1.2
SOX4Q06945 STAG1-202ENST00000383202 6055 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
SOX4Q06945 CNTN4-AS1-201ENST00000442749 1640 ntTSL 3 BASIC7.53□□□□□ -1.2
SOX4Q06945 SLC25A30-204ENST00000519676 3670 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
SOX4Q06945 CD46-203ENST00000354848 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC7.53□□□□□ -1.2
SOX4Q06945 SLC4A10-201ENST00000272716 3414 ntTSL 5 BASIC7.53□□□□□ -1.2
SOX4Q06945 BCL2L14-211ENST00000586576 1927 ntTSL 5 BASIC7.53□□□□□ -1.2
SOX4Q06945 ARNT-201ENST00000354396 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC7.53□□□□□ -1.2
SOX4Q06945 SCG5-201ENST00000300175 1238 ntAPPRIS P4 TSL 1 (best) BASIC7.53□□□□□ -1.2
SOX4Q06945 MTHFD2P5-201ENST00000320415 844 ntBASIC7.53□□□□□ -1.2
SOX4Q06945 CLEC4A-202ENST00000345999 841 ntTSL 5 BASIC7.53□□□□□ -1.2
SOX4Q06945 PPCS-201ENST00000372556 984 ntTSL 2 BASIC7.53□□□□□ -1.2
SOX4Q06945 AP000812.1-201ENST00000378140 477 ntTSL 3 BASIC7.53□□□□□ -1.2
SOX4Q06945 RNU6-1215P-201ENST00000384441 102 ntBASIC7.53□□□□□ -1.2
SOX4Q06945 CD209-205ENST00000394161 507 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
SOX4Q06945 AL359715.1-201ENST00000404330 555 ntBASIC7.53□□□□□ -1.2
SOX4Q06945 AL672212.1-201ENST00000422246 400 ntBASIC7.53□□□□□ -1.2
SOX4Q06945 LINC01384-201ENST00000422494 659 ntTSL 3 BASIC7.53□□□□□ -1.2
SOX4Q06945 AC008280.2-201ENST00000455473 307 ntBASIC7.53□□□□□ -1.2
SOX4Q06945 PSMA6P2-201ENST00000457574 686 ntBASIC7.53□□□□□ -1.2
SOX4Q06945 IQCJ-SCHIP1-AS1-201ENST00000460574 508 ntTSL 3 BASIC7.53□□□□□ -1.2
SOX4Q06945 KCNIP2-211ENST00000461105 858 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
SOX4Q06945 RPL7P41-201ENST00000485823 957 ntBASIC7.53□□□□□ -1.2
SOX4Q06945 AC079203.1-201ENST00000487972 404 ntBASIC7.53□□□□□ -1.2
SOX4Q06945 RAB7A-208ENST00000493186 329 ntTSL 5 BASIC7.53□□□□□ -1.2
SOX4Q06945 RPL23AP80-201ENST00000495605 424 ntBASIC7.53□□□□□ -1.2
SOX4Q06945 AC010168.1-201ENST00000501178 657 ntTSL 3 BASIC7.53□□□□□ -1.2
SOX4Q06945 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC7.53□□□□□ -1.2
SOX4Q06945 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC7.53□□□□□ -1.2
SOX4Q06945 RNU6-720P-201ENST00000516363 108 ntBASIC7.53□□□□□ -1.2
SOX4Q06945 AC105150.1-201ENST00000518011 551 ntTSL 3 BASIC7.53□□□□□ -1.2
SOX4Q06945 LINC02055-203ENST00000520068 712 ntTSL 2 BASIC7.53□□□□□ -1.2
SOX4Q06945 ANGPT2-203ENST00000523120 2997 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
SOX4Q06945 OR7E154P-201ENST00000525174 932 ntBASIC7.53□□□□□ -1.2
SOX4Q06945 AC124891.1-201ENST00000536322 519 ntBASIC7.53□□□□□ -1.2
SOX4Q06945 PCED1B-AS1-202ENST00000547600 523 ntTSL 3 BASIC7.53□□□□□ -1.2
SOX4Q06945 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC7.53□□□□□ -1.2
SOX4Q06945 AC104229.1-201ENST00000561364 255 ntBASIC7.53□□□□□ -1.2
SOX4Q06945 AC023813.2-201ENST00000564321 469 ntBASIC7.53□□□□□ -1.2
SOX4Q06945 ACTG1P15-201ENST00000570019 1063 ntBASIC7.53□□□□□ -1.2
SOX4Q06945 AC022069.1-201ENST00000582910 658 ntBASIC7.53□□□□□ -1.2
SOX4Q06945 AL031985.2-201ENST00000600955 480 ntBASIC7.53□□□□□ -1.2
SOX4Q06945 AL163642.2-201ENST00000604722 1019 ntBASIC7.53□□□□□ -1.2
SOX4Q06945 AC079248.2-201ENST00000623779 326 ntBASIC7.53□□□□□ -1.2
SOX4Q06945 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC7.53□□□□□ -1.2
SOX4Q06945 AC140479.4-205ENST00000636339 820 ntBASIC7.53□□□□□ -1.2
SOX4Q06945 AC011471.4-201ENST00000638271 216 ntBASIC7.53□□□□□ -1.2
SOX4Q06945 AC002115.2-201ENST00000640449 603 ntAPPRIS P1 TSL 5 BASIC7.53□□□□□ -1.2
SOX4Q06945 PBRM1-203ENST00000356770 7523 ntAPPRIS ALT1 TSL 1 (best) BASIC7.53□□□□□ -1.2
SOX4Q06945 C1D-202ENST00000407324 1379 ntTSL 3 BASIC7.53□□□□□ -1.2
SOX4Q06945 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC7.53□□□□□ -1.2
SOX4Q06945 PPP3R2-201ENST00000374806 3387 ntAPPRIS P1 BASIC7.53□□□□□ -1.2
SOX4Q06945 TLR10-202ENST00000361424 3484 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
SOX4Q06945 AC095038.1-201ENST00000429248 1591 ntBASIC7.53□□□□□ -1.2
SOX4Q06945 CEP85-201ENST00000252992 3935 ntAPPRIS P3 TSL 1 (best) BASIC7.53□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 71.5 ms