Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 KCNN3-205ENST00000618040 13057 ntTSL 5 BASIC8.53□□□□□ -1.04
MSH6P52701 BBOX1-205ENST00000529202 1725 ntAPPRIS P1 TSL 5 BASIC8.53□□□□□ -1.04
MSH6P52701 PCDH15-231ENST00000617271 6425 ntAPPRIS P3 TSL 5 BASIC8.53□□□□□ -1.04
MSH6P52701 AC062029.1-202ENST00000606164 3651 ntBASIC8.53□□□□□ -1.04
MSH6P52701 AC110597.1-201ENST00000562669 3176 ntBASIC8.53□□□□□ -1.04
MSH6P52701 AL023284.3-201ENST00000407767 334 ntBASIC8.53□□□□□ -1.04
MSH6P52701 AL596448.1-201ENST00000415024 392 ntBASIC8.53□□□□□ -1.04
MSH6P52701 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC8.53□□□□□ -1.04
MSH6P52701 LINC00383-201ENST00000433664 817 ntTSL 3 BASIC8.53□□□□□ -1.04
MSH6P52701 EEF1B2P6-201ENST00000445713 673 ntBASIC8.53□□□□□ -1.04
MSH6P52701 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC8.53□□□□□ -1.04
MSH6P52701 RANP2-201ENST00000456833 229 ntBASIC8.53□□□□□ -1.04
MSH6P52701 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC8.53□□□□□ -1.04
MSH6P52701 AC095057.1-201ENST00000507583 168 ntBASIC8.53□□□□□ -1.04
MSH6P52701 AC010609.1-201ENST00000519375 569 ntTSL 3 BASIC8.53□□□□□ -1.04
MSH6P52701 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC8.53□□□□□ -1.04
MSH6P52701 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC8.53□□□□□ -1.04
MSH6P52701 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC8.53□□□□□ -1.04
MSH6P52701 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC8.53□□□□□ -1.04
MSH6P52701 AL357562.1-201ENST00000624911 609 ntBASIC8.53□□□□□ -1.04
MSH6P52701 AC005839.1-201ENST00000624148 3213 ntBASIC8.53□□□□□ -1.04
MSH6P52701 INTS2-207ENST00000617492 5805 ntTSL 5 BASIC8.53□□□□□ -1.04
MSH6P52701 MCTP2-208ENST00000557742 1957 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
MSH6P52701 NPHP1-203ENST00000393272 2752 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
MSH6P52701 CLCA3P-203ENST00000490028 2781 ntBASIC8.53□□□□□ -1.04
MSH6P52701 TRPS1-203ENST00000395715 9990 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
MSH6P52701 RGPD1-206ENST00000641458 5271 ntAPPRIS ALT2 BASIC8.53□□□□□ -1.04
MSH6P52701 FOXP1-212ENST00000491238 2250 ntTSL 2 BASIC8.53□□□□□ -1.04
MSH6P52701 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC8.53□□□□□ -1.04
MSH6P52701 EIF4ENIF1-205ENST00000397523 3420 ntTSL 5 BASIC8.53□□□□□ -1.04
MSH6P52701 NFATC3-202ENST00000346183 6040 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
MSH6P52701 ZFHX4-204ENST00000518282 12175 ntAPPRIS ALT2 TSL 5 BASIC8.53□□□□□ -1.04
MSH6P52701 UNC79-202ENST00000393151 7908 ntTSL 5 BASIC8.53□□□□□ -1.04
MSH6P52701 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC8.53□□□□□ -1.04
MSH6P52701 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC8.52□□□□□ -1.04
MSH6P52701 ZRANB3-202ENST00000401392 6820 ntAPPRIS ALT2 TSL 1 (best) BASIC8.52□□□□□ -1.04
MSH6P52701 LINC01527-201ENST00000419578 1997 ntTSL 1 (best) BASIC8.52□□□□□ -1.04
MSH6P52701 CENPJ-206ENST00000616936 5020 ntTSL 1 (best) BASIC8.52□□□□□ -1.04
MSH6P52701 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC8.52□□□□□ -1.04
MSH6P52701 MAPK10-323ENST00000641493 3207 ntBASIC8.52□□□□□ -1.04
MSH6P52701 ZNF426-202ENST00000535489 2375 ntAPPRIS P3 TSL 1 (best) BASIC8.52□□□□□ -1.05
MSH6P52701 ITPR1-204ENST00000443694 9513 ntAPPRIS ALT1 TSL 1 (best) BASIC8.52□□□□□ -1.05
MSH6P52701 PHYHIPL-201ENST00000373878 3569 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
MSH6P52701 SCIN-201ENST00000297029 9713 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
MSH6P52701 MTIF2-201ENST00000263629 2528 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
MSH6P52701 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
MSH6P52701 CD84-201ENST00000311224 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC8.52□□□□□ -1.05
MSH6P52701 RNA5SP394-201ENST00000364216 119 ntBASIC8.52□□□□□ -1.05
MSH6P52701 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC8.52□□□□□ -1.05
MSH6P52701 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC8.52□□□□□ -1.05
MSH6P52701 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC8.52□□□□□ -1.05
MSH6P52701 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC8.52□□□□□ -1.05
MSH6P52701 AL606490.1-201ENST00000452266 765 ntBASIC8.52□□□□□ -1.05
MSH6P52701 AC091685.2-201ENST00000454924 864 ntBASIC8.52□□□□□ -1.05
MSH6P52701 AC006530.1-201ENST00000555980 571 ntBASIC8.52□□□□□ -1.05
MSH6P52701 C16orf97-205ENST00000568524 406 ntTSL 5 BASIC8.52□□□□□ -1.05
MSH6P52701 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC8.52□□□□□ -1.05
MSH6P52701 AC007204.2-201ENST00000615022 616 ntBASIC8.52□□□□□ -1.05
MSH6P52701 CU639417.4-201ENST00000623928 207 ntBASIC8.52□□□□□ -1.05
MSH6P52701 POLA1-201ENST00000379059 5440 ntAPPRIS P3 TSL 1 (best) BASIC8.52□□□□□ -1.05
MSH6P52701 POLA1-206ENST00000611764 5434 ntAPPRIS ALT2 TSL 5 BASIC8.52□□□□□ -1.05
MSH6P52701 FO393409.1-201ENST00000399325 1372 ntBASIC8.52□□□□□ -1.05
MSH6P52701 FOCAD-216ENST00000605086 4195 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
MSH6P52701 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC8.52□□□□□ -1.05
MSH6P52701 LGSN-204ENST00000622415 1612 ntTSL 2 BASIC8.52□□□□□ -1.05
MSH6P52701 TRG-AS1-201ENST00000629357 3645 ntTSL 2 BASIC8.52□□□□□ -1.05
MSH6P52701 LINC01931-201ENST00000295052 1832 ntTSL 2 BASIC8.52□□□□□ -1.05
MSH6P52701 EYA3-204ENST00000436342 5943 ntTSL 2 BASIC8.52□□□□□ -1.05
MSH6P52701 SCN8A-201ENST00000354534 11556 ntAPPRIS P3 TSL 1 (best) BASIC8.52□□□□□ -1.05
MSH6P52701 BDNF-207ENST00000395986 3979 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
MSH6P52701 SORBS2-230ENST00000448662 4356 ntTSL 2 BASIC8.52□□□□□ -1.05
MSH6P52701 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC8.51□□□□□ -1.05
MSH6P52701 CPED1-201ENST00000310396 5340 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
MSH6P52701 FER1L6-201ENST00000522917 6051 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
MSH6P52701 CCDC171-201ENST00000380701 6512 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
MSH6P52701 HSD17B13-201ENST00000302219 2269 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
MSH6P52701 CXCR2-201ENST00000318507 2879 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
MSH6P52701 SLC39A12-202ENST00000377371 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC8.51□□□□□ -1.05
MSH6P52701 CMAHP-202ENST00000377993 1681 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
MSH6P52701 AC084816.1-201ENST00000413794 565 ntTSL 4 BASIC8.51□□□□□ -1.05
MSH6P52701 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC8.51□□□□□ -1.05
MSH6P52701 AK4P4-201ENST00000419465 646 ntBASIC8.51□□□□□ -1.05
MSH6P52701 PROX1-203ENST00000435016 3075 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
MSH6P52701 MROH3P-201ENST00000435735 2676 ntBASIC8.51□□□□□ -1.05
MSH6P52701 BCORP1-202ENST00000441139 3461 ntTSL 2 BASIC8.51□□□□□ -1.05
MSH6P52701 AL645937.3-201ENST00000453647 936 ntBASIC8.51□□□□□ -1.05
MSH6P52701 NCAPH-205ENST00000455200 2952 ntAPPRIS ALT2 TSL 5 BASIC8.51□□□□□ -1.05
MSH6P52701 AC040970.1-202ENST00000517908 505 ntTSL 3 BASIC8.51□□□□□ -1.05
MSH6P52701 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC8.51□□□□□ -1.05
MSH6P52701 Mico1.1-201ENST00000611698 204 ntBASIC8.51□□□□□ -1.05
MSH6P52701 FCGR1B-210ENST00000623603 1581 ntAPPRIS P2 TSL 1 (best) BASIC8.51□□□□□ -1.05
MSH6P52701 AC119674.1-204ENST00000641348 1343 ntBASIC8.51□□□□□ -1.05
MSH6P52701 UG0898H09-202ENST00000623646 7040 ntBASIC8.51□□□□□ -1.05
MSH6P52701 OR5A2-201ENST00000302040 6318 ntAPPRIS P1 BASIC8.51□□□□□ -1.05
MSH6P52701 MAK-202ENST00000354489 3941 ntTSL 5 BASIC8.51□□□□□ -1.05
MSH6P52701 OLFM3-202ENST00000370103 3255 ntAPPRIS P3 TSL 1 (best) BASIC8.51□□□□□ -1.05
MSH6P52701 CTNND1-223ENST00000529986 5727 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
MSH6P52701 CTNND1-231ENST00000532463 5749 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
MSH6P52701 KIF27-202ENST00000334204 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC8.51□□□□□ -1.05
MSH6P52701 NACA-203ENST00000454682 6629 ntTSL 5 BASIC8.51□□□□□ -1.05
Retrieved 100 of 98,524 protein–RNA pairs in 88.6 ms