Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC9.97□□□□□ -0.81
CUX1P39880 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC9.97□□□□□ -0.81
CUX1P39880 AC022905.1-201ENST00000503430 3048 ntBASIC9.97□□□□□ -0.81
CUX1P39880 ZNF562-202ENST00000453372 2111 ntAPPRIS P3 TSL 3 BASIC9.97□□□□□ -0.81
CUX1P39880 OSBPL9-205ENST00000447887 2940 ntTSL 2 BASIC9.97□□□□□ -0.81
CUX1P39880 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC9.97□□□□□ -0.81
CUX1P39880 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC9.97□□□□□ -0.81
CUX1P39880 RNA5SP350-201ENST00000363298 111 ntBASIC9.97□□□□□ -0.81
CUX1P39880 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC9.97□□□□□ -0.81
CUX1P39880 AC112187.1-201ENST00000455837 479 ntBASIC9.97□□□□□ -0.81
CUX1P39880 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC9.97□□□□□ -0.81
CUX1P39880 AC109481.1-201ENST00000509173 282 ntBASIC9.97□□□□□ -0.81
CUX1P39880 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC9.97□□□□□ -0.81
CUX1P39880 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC9.97□□□□□ -0.81
CUX1P39880 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC9.97□□□□□ -0.81
CUX1P39880 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC9.97□□□□□ -0.81
CUX1P39880 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC9.97□□□□□ -0.81
CUX1P39880 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC9.97□□□□□ -0.81
CUX1P39880 SERBP1-203ENST00000370994 6676 ntAPPRIS P3 TSL 1 (best) BASIC9.97□□□□□ -0.81
CUX1P39880 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC9.96□□□□□ -0.81
CUX1P39880 MRE11P1-201ENST00000464884 2127 ntBASIC9.96□□□□□ -0.81
CUX1P39880 APOBEC4-201ENST00000308641 2650 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
CUX1P39880 KPNA6-201ENST00000373625 7378 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
CUX1P39880 LRRC37A-201ENST00000320254 5177 ntAPPRIS P2 TSL 1 (best) BASIC9.96□□□□□ -0.82
CUX1P39880 AC125793.1-201ENST00000565238 1493 ntTSL 1 (best) BASIC9.96□□□□□ -0.82
CUX1P39880 RNA5SP514-201ENST00000363717 111 ntBASIC9.96□□□□□ -0.82
CUX1P39880 AL357752.1-201ENST00000412817 349 ntBASIC9.96□□□□□ -0.82
CUX1P39880 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC9.96□□□□□ -0.82
CUX1P39880 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC9.96□□□□□ -0.82
CUX1P39880 AC083795.1-201ENST00000491760 320 ntBASIC9.96□□□□□ -0.82
CUX1P39880 NRBF2P4-201ENST00000520874 850 ntBASIC9.96□□□□□ -0.82
CUX1P39880 OR4A40P-201ENST00000533878 948 ntBASIC9.96□□□□□ -0.82
CUX1P39880 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC9.96□□□□□ -0.82
CUX1P39880 IGBP1P1-201ENST00000554337 1009 ntBASIC9.96□□□□□ -0.82
CUX1P39880 AC092944.2-201ENST00000605443 889 ntBASIC9.96□□□□□ -0.82
CUX1P39880 MIR8080-201ENST00000622224 89 ntBASIC9.96□□□□□ -0.82
CUX1P39880 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC9.96□□□□□ -0.82
CUX1P39880 IFRD1-216ENST00000535603 3397 ntTSL 2 BASIC9.96□□□□□ -0.82
CUX1P39880 MAP3K7CL-209ENST00000399947 2003 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
CUX1P39880 FO393409.1-201ENST00000399325 1372 ntBASIC9.95□□□□□ -0.82
CUX1P39880 TSC1-203ENST00000440111 8463 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
CUX1P39880 ENTPD1-AS1-212ENST00000458228 3274 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
CUX1P39880 TRIM6-202ENST00000380097 3403 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
CUX1P39880 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
CUX1P39880 ZNF532-223ENST00000591230 4450 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
CUX1P39880 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
CUX1P39880 ANO6-201ENST00000320560 5975 ntAPPRIS P3 TSL 1 (best) BASIC9.95□□□□□ -0.82
CUX1P39880 NBPF26-204ENST00000615145 2656 ntTSL 5 BASIC9.95□□□□□ -0.82
CUX1P39880 NBPF14-209ENST00000620240 2656 ntTSL 5 BASIC9.95□□□□□ -0.82
CUX1P39880 PDPR-210ENST00000568530 7223 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
CUX1P39880 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC9.95□□□□□ -0.82
CUX1P39880 MIR1286-201ENST00000408112 78 ntBASIC9.95□□□□□ -0.82
CUX1P39880 RN7SL329P-201ENST00000467740 299 ntBASIC9.95□□□□□ -0.82
CUX1P39880 IGHVIII-13-1-201ENST00000517613 291 ntBASIC9.95□□□□□ -0.82
CUX1P39880 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC9.95□□□□□ -0.82
CUX1P39880 FKBP1AP1-201ENST00000594588 318 ntBASIC9.95□□□□□ -0.82
CUX1P39880 AL445222.1-201ENST00000607259 628 ntBASIC9.95□□□□□ -0.82
CUX1P39880 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC9.95□□□□□ -0.82
CUX1P39880 AC007683.2-201ENST00000624681 714 ntBASIC9.95□□□□□ -0.82
CUX1P39880 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC9.95□□□□□ -0.82
CUX1P39880 MLIP-206ENST00000502396 3102 ntAPPRIS ALT2 TSL 2 BASIC9.95□□□□□ -0.82
CUX1P39880 NAA25-201ENST00000261745 6010 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
CUX1P39880 ZNF24-204ENST00000589881 7419 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
CUX1P39880 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC9.95□□□□□ -0.82
CUX1P39880 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC9.95□□□□□ -0.82
CUX1P39880 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
CUX1P39880 TMTC1-201ENST00000256062 8805 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
CUX1P39880 GDPD4-202ENST00000376217 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC9.94□□□□□ -0.82
CUX1P39880 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC9.94□□□□□ -0.82
CUX1P39880 C1orf194-204ENST00000369949 731 ntTSL 2 BASIC9.94□□□□□ -0.82
CUX1P39880 MIR640-201ENST00000385086 96 ntBASIC9.94□□□□□ -0.82
CUX1P39880 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC9.94□□□□□ -0.82
CUX1P39880 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC9.94□□□□□ -0.82
CUX1P39880 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC9.94□□□□□ -0.82
CUX1P39880 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC9.94□□□□□ -0.82
CUX1P39880 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
CUX1P39880 AC116424.1-203ENST00000513940 671 ntTSL 3 BASIC9.94□□□□□ -0.82
CUX1P39880 IGHV1-14-201ENST00000523391 241 ntBASIC9.94□□□□□ -0.82
CUX1P39880 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC9.94□□□□□ -0.82
CUX1P39880 OR4H6P-201ENST00000563771 921 ntBASIC9.94□□□□□ -0.82
CUX1P39880 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC9.94□□□□□ -0.82
CUX1P39880 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC9.94□□□□□ -0.82
CUX1P39880 AC068870.2-201ENST00000620635 389 ntBASIC9.94□□□□□ -0.82
CUX1P39880 KIF6-202ENST00000287152 9082 ntAPPRIS P1 TSL 2 BASIC9.94□□□□□ -0.82
CUX1P39880 KLHL5-205ENST00000508137 2926 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
CUX1P39880 LINC01505-205ENST00000636028 2298 ntTSL 5 BASIC9.94□□□□□ -0.82
CUX1P39880 KIAA1549L-201ENST00000265654 4492 ntAPPRIS ALT2 TSL 2 BASIC9.94□□□□□ -0.82
CUX1P39880 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC9.94□□□□□ -0.82
CUX1P39880 YIPF4-201ENST00000238831 11949 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
CUX1P39880 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
CUX1P39880 AC073429.2-201ENST00000569694 1444 ntBASIC9.93□□□□□ -0.82
CUX1P39880 BPHL-201ENST00000380368 797 ntTSL 5 BASIC9.93□□□□□ -0.82
CUX1P39880 HIST1H3PS1-201ENST00000404612 417 ntBASIC9.93□□□□□ -0.82
CUX1P39880 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC9.93□□□□□ -0.82
CUX1P39880 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC9.93□□□□□ -0.82
CUX1P39880 AL022237.1-201ENST00000446663 358 ntBASIC9.93□□□□□ -0.82
CUX1P39880 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC9.93□□□□□ -0.82
CUX1P39880 AC103563.5-201ENST00000455643 364 ntBASIC9.93□□□□□ -0.82
CUX1P39880 RN7SL610P-201ENST00000463845 291 ntBASIC9.93□□□□□ -0.82
CUX1P39880 AC100832.1-201ENST00000471945 383 ntBASIC9.93□□□□□ -0.82
Retrieved 100 of 98,524 protein–RNA pairs in 131 ms