Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC096921.2-201ENST00000561507 1916 ntBASIC8.05□□□□□ -1.12
HOXC9P31274 KAT6B-204ENST00000372724 7106 ntAPPRIS ALT2 TSL 5 BASIC8.05□□□□□ -1.12
HOXC9P31274 AC020978.8-201ENST00000571975 3022 ntBASIC8.05□□□□□ -1.12
HOXC9P31274 IL22RA2-201ENST00000296980 2886 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
HOXC9P31274 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC8.04□□□□□ -1.12
HOXC9P31274 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
HOXC9P31274 EZH1-202ENST00000428826 4623 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
HOXC9P31274 N4BP2-201ENST00000261435 9744 ntAPPRIS P1 TSL 5 BASIC8.04□□□□□ -1.12
HOXC9P31274 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC8.04□□□□□ -1.12
HOXC9P31274 AC016739.1-201ENST00000405359 345 ntBASIC8.04□□□□□ -1.12
HOXC9P31274 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC8.04□□□□□ -1.12
HOXC9P31274 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC8.04□□□□□ -1.12
HOXC9P31274 AC127526.2-201ENST00000426436 775 ntBASIC8.04□□□□□ -1.12
HOXC9P31274 LYPLA1P1-201ENST00000434514 622 ntBASIC8.04□□□□□ -1.12
HOXC9P31274 AC110749.1-201ENST00000462007 357 ntBASIC8.04□□□□□ -1.12
HOXC9P31274 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC8.04□□□□□ -1.12
HOXC9P31274 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC8.04□□□□□ -1.12
HOXC9P31274 ATP5LP3-201ENST00000514223 304 ntBASIC8.04□□□□□ -1.12
HOXC9P31274 CYCSP22-201ENST00000517555 339 ntBASIC8.04□□□□□ -1.12
HOXC9P31274 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC8.04□□□□□ -1.12
HOXC9P31274 AC009656.1-201ENST00000531966 478 ntTSL 3 BASIC8.04□□□□□ -1.12
HOXC9P31274 TCEANC-205ENST00000544987 1146 ntTSL 5 BASIC8.04□□□□□ -1.12
HOXC9P31274 NPM1P45-201ENST00000583151 559 ntBASIC8.04□□□□□ -1.12
HOXC9P31274 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC8.04□□□□□ -1.12
HOXC9P31274 AC015802.2-201ENST00000589690 189 ntBASIC8.04□□□□□ -1.12
HOXC9P31274 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
HOXC9P31274 AL021368.3-201ENST00000607119 578 ntBASIC8.04□□□□□ -1.12
HOXC9P31274 MIR6826-201ENST00000617808 98 ntBASIC8.04□□□□□ -1.12
HOXC9P31274 AC018659.2-201ENST00000624690 715 ntBASIC8.04□□□□□ -1.12
HOXC9P31274 AC003992.1-201ENST00000635364 557 ntBASIC8.04□□□□□ -1.12
HOXC9P31274 ITPR1-204ENST00000443694 9513 ntAPPRIS ALT1 TSL 1 (best) BASIC8.04□□□□□ -1.12
HOXC9P31274 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
HOXC9P31274 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC8.04□□□□□ -1.12
HOXC9P31274 TGFBR3-207ENST00000525962 3927 ntAPPRIS P3 TSL 1 (best) BASIC8.04□□□□□ -1.12
HOXC9P31274 AC092692.1-201ENST00000623625 2595 ntBASIC8.04□□□□□ -1.12
HOXC9P31274 GRIK2-205ENST00000369138 4921 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
HOXC9P31274 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
HOXC9P31274 LINC02153-202ENST00000522604 1644 ntTSL 2 BASIC8.03□□□□□ -1.12
HOXC9P31274 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC8.03□□□□□ -1.12
HOXC9P31274 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
HOXC9P31274 KCNN3-205ENST00000618040 13057 ntTSL 5 BASIC8.03□□□□□ -1.12
HOXC9P31274 ZNF320-205ENST00000595635 6448 ntAPPRIS P1 TSL 2 BASIC8.03□□□□□ -1.12
HOXC9P31274 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
HOXC9P31274 PNPLA4-204ENST00000537427 2559 ntTSL 2 BASIC8.03□□□□□ -1.12
HOXC9P31274 AC011369.2-201ENST00000624423 1567 ntBASIC8.03□□□□□ -1.12
HOXC9P31274 PDZK1P1-202ENST00000425209 1350 ntBASIC8.03□□□□□ -1.12
HOXC9P31274 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
HOXC9P31274 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
HOXC9P31274 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
HOXC9P31274 SNORA64.1-201ENST00000362600 132 ntBASIC8.03□□□□□ -1.12
HOXC9P31274 CAV1-204ENST00000393470 598 ntTSL 4 BASIC8.03□□□□□ -1.12
HOXC9P31274 GTF3AP1-201ENST00000416942 1004 ntBASIC8.03□□□□□ -1.12
HOXC9P31274 NMD3P2-201ENST00000421815 761 ntBASIC8.03□□□□□ -1.12
HOXC9P31274 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC8.03□□□□□ -1.12
HOXC9P31274 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC8.03□□□□□ -1.12
HOXC9P31274 GAPDHP48-201ENST00000436626 961 ntBASIC8.03□□□□□ -1.12
HOXC9P31274 RPSAP37-201ENST00000470913 821 ntBASIC8.03□□□□□ -1.12
HOXC9P31274 AC023136.1-201ENST00000513093 1105 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
HOXC9P31274 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC8.03□□□□□ -1.12
HOXC9P31274 ZCCHC10-210ENST00000513848 876 ntAPPRIS ALT2 TSL 2 BASIC8.03□□□□□ -1.12
HOXC9P31274 AC005832.1-201ENST00000544380 572 ntTSL 4 BASIC8.03□□□□□ -1.12
HOXC9P31274 AC022404.1-201ENST00000555320 273 ntBASIC8.03□□□□□ -1.12
HOXC9P31274 AC119403.2-201ENST00000590960 598 ntBASIC8.03□□□□□ -1.12
HOXC9P31274 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC8.03□□□□□ -1.12
HOXC9P31274 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC8.03□□□□□ -1.12
HOXC9P31274 NREP-206ENST00000447165 2304 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
HOXC9P31274 C16orf62-202ENST00000417362 3115 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
HOXC9P31274 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC8.03□□□□□ -1.12
HOXC9P31274 FGFR1OP-202ENST00000366847 14166 ntAPPRIS P4 TSL 1 (best) BASIC8.03□□□□□ -1.12
HOXC9P31274 ADAMTS9-201ENST00000295903 7060 ntTSL 1 (best) BASIC8.02□□□□□ -1.12
HOXC9P31274 OSBPL9-206ENST00000453295 2842 ntTSL 1 (best) BASIC8.02□□□□□ -1.12
HOXC9P31274 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC8.02□□□□□ -1.13
HOXC9P31274 LINC01903-201ENST00000580659 2149 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
HOXC9P31274 ELMOD2-201ENST00000323570 4409 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
HOXC9P31274 DDX58-202ENST00000379883 4353 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
HOXC9P31274 OR10R3P-201ENST00000361688 942 ntBASIC8.02□□□□□ -1.13
HOXC9P31274 AL391361.1-201ENST00000405580 489 ntBASIC8.02□□□□□ -1.13
HOXC9P31274 ZSCAN12P1-201ENST00000406489 419 ntBASIC8.02□□□□□ -1.13
HOXC9P31274 AL445928.1-201ENST00000435545 222 ntBASIC8.02□□□□□ -1.13
HOXC9P31274 AC018450.1-202ENST00000465880 529 ntTSL 4 BASIC8.02□□□□□ -1.13
HOXC9P31274 AC083795.1-201ENST00000491760 320 ntBASIC8.02□□□□□ -1.13
HOXC9P31274 RN7SL57P-201ENST00000493687 290 ntBASIC8.02□□□□□ -1.13
HOXC9P31274 AC008629.2-201ENST00000503783 483 ntBASIC8.02□□□□□ -1.13
HOXC9P31274 ERVH-1-201ENST00000507666 639 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
HOXC9P31274 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC8.02□□□□□ -1.13
HOXC9P31274 LECT2-205ENST00000522943 574 ntTSL 3 BASIC8.02□□□□□ -1.13
HOXC9P31274 AP001893.1-201ENST00000532866 362 ntTSL 5 BASIC8.02□□□□□ -1.13
HOXC9P31274 ODF4-202ENST00000584943 804 ntAPPRIS ALT2 TSL 1 (best) BASIC8.02□□□□□ -1.13
HOXC9P31274 GABRR1-206ENST00000611484 3259 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
HOXC9P31274 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC8.02□□□□□ -1.13
HOXC9P31274 UTP14C-201ENST00000521776 5529 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
HOXC9P31274 NAV2-202ENST00000360655 10667 ntAPPRIS ALT2 TSL 1 (best) BASIC8.02□□□□□ -1.13
HOXC9P31274 LMO7-203ENST00000357063 8237 ntAPPRIS ALT2 TSL 5 BASIC8.02□□□□□ -1.13
HOXC9P31274 APOOL-202ENST00000613473 6445 ntAPPRIS ALT1 TSL 5 BASIC8.02□□□□□ -1.13
HOXC9P31274 LMO7-202ENST00000341547 7237 ntAPPRIS P3 TSL 1 (best) BASIC8.02□□□□□ -1.13
HOXC9P31274 SGK3-201ENST00000345714 4055 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
HOXC9P31274 AL359195.2-201ENST00000623657 4412 ntBASIC8.02□□□□□ -1.13
HOXC9P31274 MEF2C-AS1-214ENST00000514794 2350 ntTSL 4 BASIC8.02□□□□□ -1.13
HOXC9P31274 OR5A2-201ENST00000302040 6318 ntAPPRIS P1 BASIC8.01□□□□□ -1.13
HOXC9P31274 NBPF11-202ENST00000614015 4630 ntAPPRIS P2 TSL 2 BASIC8.01□□□□□ -1.13
Retrieved 100 of 98,524 protein–RNA pairs in 69.4 ms