Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC005180.2-201ENST00000585620 562 ntTSL 3 BASIC5.81□□□□□ -1.48
SDC1P18827 AC091151.1-201ENST00000587369 726 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SDC1P18827 AC016252.1-201ENST00000609721 474 ntBASIC5.81□□□□□ -1.48
SDC1P18827 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC5.81□□□□□ -1.48
SDC1P18827 ENTPD1-AS1-212ENST00000458228 3274 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SDC1P18827 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC5.81□□□□□ -1.48
SDC1P18827 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SDC1P18827 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SDC1P18827 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC5.81□□□□□ -1.48
SDC1P18827 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC5.81□□□□□ -1.48
SDC1P18827 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC5.81□□□□□ -1.48
SDC1P18827 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SDC1P18827 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC5.81□□□□□ -1.48
SDC1P18827 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SDC1P18827 UEVLD-202ENST00000320750 1799 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
SDC1P18827 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
SDC1P18827 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
SDC1P18827 SELE-204ENST00000367776 3576 ntTSL 5 BASIC5.8□□□□□ -1.48
SDC1P18827 SELE-205ENST00000367777 3576 ntTSL 5 BASIC5.8□□□□□ -1.48
SDC1P18827 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC5.8□□□□□ -1.48
SDC1P18827 TAF12-202ENST00000373824 1334 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
SDC1P18827 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC5.8□□□□□ -1.48
SDC1P18827 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
SDC1P18827 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC5.8□□□□□ -1.48
SDC1P18827 DHRS9-204ENST00000428522 1678 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
SDC1P18827 CD52-201ENST00000374213 468 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
SDC1P18827 TRAV25-201ENST00000390454 403 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
SDC1P18827 IGHV6-1-201ENST00000390593 415 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
SDC1P18827 ATF2-205ENST00000409499 801 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
SDC1P18827 RN7SKP166-201ENST00000410812 305 ntBASIC5.8□□□□□ -1.48
SDC1P18827 LINC01811-201ENST00000415991 594 ntTSL 5 BASIC5.8□□□□□ -1.48
SDC1P18827 BBIP1-205ENST00000436562 383 ntAPPRIS P1 TSL 3 BASIC5.8□□□□□ -1.48
SDC1P18827 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC5.8□□□□□ -1.48
SDC1P18827 AC245291.3-201ENST00000443400 292 ntBASIC5.8□□□□□ -1.48
SDC1P18827 AC234771.2-201ENST00000445718 597 ntBASIC5.8□□□□□ -1.48
SDC1P18827 RPS18P1-201ENST00000447840 458 ntBASIC5.8□□□□□ -1.48
SDC1P18827 AL354989.1-201ENST00000448245 635 ntTSL 3 BASIC5.8□□□□□ -1.48
SDC1P18827 AC073409.1-201ENST00000451749 269 ntTSL 3 BASIC5.8□□□□□ -1.48
SDC1P18827 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC5.8□□□□□ -1.48
SDC1P18827 AC104126.1-201ENST00000504004 711 ntTSL 3 BASIC5.8□□□□□ -1.48
SDC1P18827 AC108727.2-201ENST00000512277 392 ntTSL 3 BASIC5.8□□□□□ -1.48
SDC1P18827 LINC02412-201ENST00000552584 1269 ntTSL 5 BASIC5.8□□□□□ -1.48
SDC1P18827 TSSK4-207ENST00000556621 896 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
SDC1P18827 AC013652.2-202ENST00000558948 910 ntTSL 3 BASIC5.8□□□□□ -1.48
SDC1P18827 AC005632.2-201ENST00000564271 828 ntBASIC5.8□□□□□ -1.48
SDC1P18827 AC007923.1-201ENST00000577970 505 ntTSL 4 BASIC5.8□□□□□ -1.48
SDC1P18827 MIR7515HG-235ENST00000590865 918 ntTSL 5 BASIC5.8□□□□□ -1.48
SDC1P18827 AC006116.9-203ENST00000591036 566 ntTSL 4 BASIC5.8□□□□□ -1.48
SDC1P18827 AP001823.1-201ENST00000604056 1003 ntBASIC5.8□□□□□ -1.48
SDC1P18827 AC012368.3-201ENST00000604190 219 ntBASIC5.8□□□□□ -1.48
SDC1P18827 AL139041.1-201ENST00000605480 610 ntBASIC5.8□□□□□ -1.48
SDC1P18827 AL161457.2-204ENST00000609241 869 ntTSL 5 BASIC5.8□□□□□ -1.48
SDC1P18827 AL136097.3-201ENST00000611097 505 ntBASIC5.8□□□□□ -1.48
SDC1P18827 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC5.8□□□□□ -1.48
SDC1P18827 AC141930.3-201ENST00000640435 762 ntTSL 5 BASIC5.8□□□□□ -1.48
SDC1P18827 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
SDC1P18827 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC5.8□□□□□ -1.48
SDC1P18827 THRB-IT1-201ENST00000425296 1754 ntTSL 2 BASIC5.8□□□□□ -1.48
SDC1P18827 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
SDC1P18827 CLHC1-204ENST00000407122 2139 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
SDC1P18827 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
SDC1P18827 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
SDC1P18827 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC5.79□□□□□ -1.48
SDC1P18827 AC126755.2-201ENST00000545114 1522 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SDC1P18827 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
SDC1P18827 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC5.79□□□□□ -1.48
SDC1P18827 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
SDC1P18827 KLHL2-210ENST00000538127 2907 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SDC1P18827 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
SDC1P18827 SEMA5A-AS1-201ENST00000510879 1679 ntTSL 2 BASIC5.79□□□□□ -1.48
SDC1P18827 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SDC1P18827 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
SDC1P18827 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC5.79□□□□□ -1.48
SDC1P18827 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SDC1P18827 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SDC1P18827 OR4N2-201ENST00000315947 924 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
SDC1P18827 FCGR1B-202ENST00000369383 570 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SDC1P18827 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
SDC1P18827 RN7SKP144-201ENST00000411108 279 ntBASIC5.79□□□□□ -1.48
SDC1P18827 AC000058.1-201ENST00000415249 536 ntTSL 4 BASIC5.79□□□□□ -1.48
SDC1P18827 RPS15AP30-201ENST00000420976 390 ntBASIC5.79□□□□□ -1.48
SDC1P18827 AL031846.1-202ENST00000424436 592 ntTSL 2 BASIC5.79□□□□□ -1.48
SDC1P18827 CCNB1IP1P1-201ENST00000428976 839 ntBASIC5.79□□□□□ -1.48
SDC1P18827 USP24P1-201ENST00000433802 779 ntBASIC5.79□□□□□ -1.48
SDC1P18827 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC5.79□□□□□ -1.48
SDC1P18827 RPS3AP38-201ENST00000435889 763 ntBASIC5.79□□□□□ -1.48
SDC1P18827 RPS19P6-201ENST00000441327 433 ntBASIC5.79□□□□□ -1.48
SDC1P18827 AL645936.1-201ENST00000441979 518 ntBASIC5.79□□□□□ -1.48
SDC1P18827 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC5.79□□□□□ -1.48
SDC1P18827 RPL23AP40-201ENST00000487630 390 ntBASIC5.79□□□□□ -1.48
SDC1P18827 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC5.79□□□□□ -1.48
SDC1P18827 AC095052.1-201ENST00000509955 863 ntBASIC5.79□□□□□ -1.48
SDC1P18827 AC138517.1-201ENST00000515724 568 ntBASIC5.79□□□□□ -1.48
SDC1P18827 SNORA74.1-201ENST00000516320 180 ntBASIC5.79□□□□□ -1.48
SDC1P18827 ZFAND1-204ENST00000517588 633 ntTSL 2 BASIC5.79□□□□□ -1.48
SDC1P18827 IGHV7-34-1-201ENST00000519200 350 ntBASIC5.79□□□□□ -1.48
SDC1P18827 AP003080.1-202ENST00000526526 915 ntBASIC5.79□□□□□ -1.48
SDC1P18827 AC021269.1-201ENST00000526860 705 ntBASIC5.79□□□□□ -1.48
SDC1P18827 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC5.79□□□□□ -1.48
SDC1P18827 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC5.79□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 82.4 ms