Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC026951.2-201ENST00000613847 241 ntBASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 PPP3CB-AS1-215ENST00000620559 656 ntTSL 5 BASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 OFCC1-218ENST00000622909 754 ntAPPRIS ALT2 TSL 5 BASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 AC092159.4-201ENST00000624944 550 ntBASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 CCDC196-207ENST00000636229 1107 ntAPPRIS P1 TSL 5 BASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 DOCK11P1-201ENST00000553480 5932 ntBASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 AL033543.1-201ENST00000623440 13454 ntBASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.15
CCDC39Q9UFE4 ZNF33B-201ENST00000359467 5958 ntAPPRIS P2 TSL 1 (best) BASIC7.9□□□□□ -1.15
CCDC39Q9UFE4 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC7.9□□□□□ -1.15
CCDC39Q9UFE4 COX7B-203ENST00000481445 2471 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.15
CCDC39Q9UFE4 ESRRG-208ENST00000391890 5542 ntAPPRIS P1 TSL 5 BASIC7.9□□□□□ -1.15
CCDC39Q9UFE4 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.15
CCDC39Q9UFE4 ZNF253-201ENST00000355650 2268 ntTSL 1 (best) BASIC7.9□□□□□ -1.15
CCDC39Q9UFE4 ABCA11P-202ENST00000504019 2110 ntBASIC7.9□□□□□ -1.15
CCDC39Q9UFE4 NCOA4-206ENST00000585056 2124 ntTSL 2 BASIC7.9□□□□□ -1.15
CCDC39Q9UFE4 RNF146-215ENST00000616343 2077 ntAPPRIS ALT1 TSL 5 BASIC7.9□□□□□ -1.15
CCDC39Q9UFE4 WASHC4-214ENST00000620430 5807 ntAPPRIS ALT1 TSL 1 (best) BASIC7.9□□□□□ -1.15
CCDC39Q9UFE4 SNX25-207ENST00000618785 3151 ntTSL 5 BASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 AC025809.2-201ENST00000625085 1802 ntBASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 NABP1-204ENST00000410026 11521 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 AC011504.1-201ENST00000623331 4103 ntBASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 LINC01232-204ENST00000626729 2796 ntTSL 2 BASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 CASP10-208ENST00000448480 1603 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 DDX18-201ENST00000263239 3796 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 TMEM161BP1-201ENST00000457388 1457 ntBASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 AP002478.1-201ENST00000577848 1455 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 TMEM257-201ENST00000408967 2441 ntAPPRIS P1 BASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 MTPAP-201ENST00000263063 5601 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 PAGE4-201ENST00000218068 499 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 RN7SKP55-201ENST00000364888 307 ntBASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 PFKFB1-201ENST00000374992 1156 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 UNC50-203ENST00000409347 1276 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 GSTM2-205ENST00000414179 982 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 ANXA2P2-201ENST00000435128 1020 ntBASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 RPL34P26-201ENST00000445636 354 ntBASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 AL590399.3-202ENST00000448491 495 ntTSL 5 BASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 STARD13-IT1-201ENST00000456087 452 ntTSL 5 BASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 AC078857.1-201ENST00000469870 667 ntBASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 MTCYBP16-201ENST00000509187 1129 ntBASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 AC092436.4-201ENST00000510905 483 ntTSL 3 BASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 NR1I3-229ENST00000511748 480 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 AP001803.1-201ENST00000525668 147 ntBASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 CASP1P2-201ENST00000526830 1258 ntBASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 ACRV1-203ENST00000530048 794 ntAPPRIS ALT2 TSL 3 BASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 OR5M6P-201ENST00000530227 937 ntBASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 ANP32E-205ENST00000533654 908 ntTSL 2 BASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 AC078950.1-201ENST00000538349 550 ntTSL 4 BASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 AL161757.4-202ENST00000557467 737 ntTSL 3 BASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 AC007639.1-201ENST00000577281 833 ntTSL 3 BASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 RN7SL42P-201ENST00000579786 294 ntBASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 MIR1273F-201ENST00000580581 99 ntBASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 C17orf80-208ENST00000582793 531 ntTSL 2 BASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 MIR4786-201ENST00000583954 80 ntBASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 AC091135.1-201ENST00000585943 307 ntBASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 ZNF397-211ENST00000592264 1104 ntTSL 3 BASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 AC004987.4-201ENST00000603383 338 ntBASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 AL512413.1-201ENST00000606489 382 ntBASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 AL513477.2-201ENST00000607858 568 ntBASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 AL031777.2-201ENST00000611953 196 ntBASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 AC011471.4-201ENST00000638271 216 ntBASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 ADGRB3-203ENST00000546190 4569 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 HEPH-206ENST00000441993 4310 ntAPPRIS ALT2 TSL 1 (best) BASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 PAPPA-AS2-201ENST00000438048 1854 ntTSL 2 BASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 AC006305.1-201ENST00000382897 2558 ntTSL 2 BASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 ZCCHC6-206ENST00000375963 5379 ntAPPRIS P1 TSL 5 BASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 AC087392.3-202ENST00000358446 1754 ntBASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 CBWD6-203ENST00000456520 1608 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
CCDC39Q9UFE4 PSMC6-218ENST00000606149 1560 ntAPPRIS ALT1 TSL 1 (best) BASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 AKAP17BP-201ENST00000431706 2719 ntBASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 SGO1P1-201ENST00000603525 1447 ntBASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 TTC39B-207ENST00000507993 1950 ntAPPRIS ALT2 TSL 2 BASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 RSC1A1-201ENST00000345034 1854 ntAPPRIS P1 BASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 MAGEB16-204ENST00000399989 1818 ntAPPRIS P2 TSL 5 BASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 PCDH18-201ENST00000344876 5906 ntAPPRIS P3 TSL 1 (best) BASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 AC023886.2-201ENST00000321285 411 ntBASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 Y_RNA.201-201ENST00000364052 96 ntBASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 SNORA70.5-201ENST00000365519 135 ntBASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 DEFB121-202ENST00000376314 389 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 AC119751.3-201ENST00000399720 670 ntBASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 SULT6B1-201ENST00000407963 902 ntTSL 5 BASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 AL024507.1-201ENST00000412741 274 ntBASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC7.88□□□□□ -1.15
CCDC39Q9UFE4 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC7.88□□□□□ -1.15
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms