Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC090709.1-201ENST00000548384 716 ntTSL 3 BASIC5.48□□□□□ -1.53
NKX3-1Q99801 APAF1-211ENST00000552268 1143 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
NKX3-1Q99801 DAAM1-208ENST00000556135 582 ntTSL 3 BASIC5.48□□□□□ -1.53
NKX3-1Q99801 AC007494.1-201ENST00000562293 760 ntBASIC5.48□□□□□ -1.53
NKX3-1Q99801 AC136285.2-201ENST00000562873 378 ntTSL 3 BASIC5.48□□□□□ -1.53
NKX3-1Q99801 STRADA-207ENST00000578008 1153 ntTSL 5 BASIC5.48□□□□□ -1.53
NKX3-1Q99801 RPL29P33-201ENST00000587474 316 ntBASIC5.48□□□□□ -1.53
NKX3-1Q99801 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC5.48□□□□□ -1.53
NKX3-1Q99801 AC006262.3-201ENST00000597337 258 ntTSL 3 BASIC5.48□□□□□ -1.53
NKX3-1Q99801 HTR1DP1-201ENST00000616500 888 ntBASIC5.48□□□□□ -1.53
NKX3-1Q99801 U1.41-201ENST00000617626 165 ntBASIC5.48□□□□□ -1.53
NKX3-1Q99801 AL391597.1-201ENST00000618707 694 ntBASIC5.48□□□□□ -1.53
NKX3-1Q99801 RSU1P2-204ENST00000619977 1240 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
NKX3-1Q99801 RAB28P4-201ENST00000622233 665 ntBASIC5.48□□□□□ -1.53
NKX3-1Q99801 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC5.48□□□□□ -1.53
NKX3-1Q99801 SCRN1-210ENST00000631335 423 ntTSL 5 BASIC5.48□□□□□ -1.53
NKX3-1Q99801 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC5.48□□□□□ -1.53
NKX3-1Q99801 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC5.48□□□□□ -1.53
NKX3-1Q99801 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC5.48□□□□□ -1.53
NKX3-1Q99801 PIGA-216ENST00000637296 2113 ntTSL 5 BASIC5.48□□□□□ -1.53
NKX3-1Q99801 ESRRG-212ENST00000463665 3359 ntTSL 2 BASIC5.48□□□□□ -1.53
NKX3-1Q99801 HAVCR1-204ENST00000522693 1713 ntAPPRIS ALT2 TSL 2 BASIC5.48□□□□□ -1.53
NKX3-1Q99801 AC079248.1-201ENST00000427568 1546 ntBASIC5.48□□□□□ -1.53
NKX3-1Q99801 C11orf1-203ENST00000529270 1437 ntTSL 2 BASIC5.48□□□□□ -1.53
NKX3-1Q99801 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC5.48□□□□□ -1.53
NKX3-1Q99801 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
NKX3-1Q99801 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC5.47□□□□□ -1.53
NKX3-1Q99801 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
NKX3-1Q99801 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
NKX3-1Q99801 PLEKHA1-205ENST00000433307 3704 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
NKX3-1Q99801 DDX47-201ENST00000352940 1698 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
NKX3-1Q99801 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
NKX3-1Q99801 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC5.47□□□□□ -1.53
NKX3-1Q99801 AC007255.1-201ENST00000450540 1376 ntTSL 3 BASIC5.47□□□□□ -1.53
NKX3-1Q99801 NAT1-209ENST00000541942 1948 ntAPPRIS P1 TSL 3 BASIC5.47□□□□□ -1.53
NKX3-1Q99801 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
NKX3-1Q99801 NCOA4P2-201ENST00000340589 1813 ntBASIC5.47□□□□□ -1.53
NKX3-1Q99801 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
NKX3-1Q99801 RNA5SP382-201ENST00000363355 112 ntBASIC5.47□□□□□ -1.53
NKX3-1Q99801 RNA5SP140-201ENST00000364524 92 ntBASIC5.47□□□□□ -1.53
NKX3-1Q99801 RN7SKP191-201ENST00000364713 306 ntBASIC5.47□□□□□ -1.53
NKX3-1Q99801 IGKC-201ENST00000390237 523 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
NKX3-1Q99801 TRAV35-201ENST00000390462 330 ntBASIC5.47□□□□□ -1.53
NKX3-1Q99801 SDHC-203ENST00000392169 369 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
NKX3-1Q99801 CEACAM1-208ENST00000403461 1263 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
NKX3-1Q99801 RPL23AP18-201ENST00000416139 468 ntBASIC5.47□□□□□ -1.53
NKX3-1Q99801 AC233728.1-201ENST00000418049 218 ntTSL 5 BASIC5.47□□□□□ -1.53
NKX3-1Q99801 AL358394.1-201ENST00000422807 535 ntTSL 2 BASIC5.47□□□□□ -1.53
NKX3-1Q99801 AHCYP8-201ENST00000425108 209 ntBASIC5.47□□□□□ -1.53
NKX3-1Q99801 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC5.47□□□□□ -1.53
NKX3-1Q99801 AC013410.1-201ENST00000436223 1232 ntBASIC5.47□□□□□ -1.53
NKX3-1Q99801 AC092106.2-201ENST00000436597 487 ntBASIC5.47□□□□□ -1.53
NKX3-1Q99801 AC096632.2-201ENST00000438139 1239 ntBASIC5.47□□□□□ -1.53
NKX3-1Q99801 AL512637.1-201ENST00000439523 1231 ntBASIC5.47□□□□□ -1.53
NKX3-1Q99801 NPM1P23-201ENST00000440193 849 ntBASIC5.47□□□□□ -1.53
NKX3-1Q99801 AL022237.1-201ENST00000446663 358 ntBASIC5.47□□□□□ -1.53
NKX3-1Q99801 AC007688.1-201ENST00000475592 759 ntBASIC5.47□□□□□ -1.53
NKX3-1Q99801 RAB7A-205ENST00000485280 507 ntTSL 3 BASIC5.47□□□□□ -1.53
NKX3-1Q99801 AC078785.1-205ENST00000491578 482 ntTSL 4 BASIC5.47□□□□□ -1.53
NKX3-1Q99801 ANAPC10-213ENST00000512680 505 ntTSL 3 BASIC5.47□□□□□ -1.53
NKX3-1Q99801 MINOS1P4-201ENST00000515470 318 ntBASIC5.47□□□□□ -1.53
NKX3-1Q99801 FBXO16-207ENST00000518734 995 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
NKX3-1Q99801 IGKV1D-22-201ENST00000518953 324 ntBASIC5.47□□□□□ -1.53
NKX3-1Q99801 AP002954.1-201ENST00000526274 425 ntTSL 3 BASIC5.47□□□□□ -1.53
NKX3-1Q99801 BTG1P1-201ENST00000540396 508 ntBASIC5.47□□□□□ -1.53
NKX3-1Q99801 NPIPA8-202ENST00000541810 1131 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
NKX3-1Q99801 NPIPA3-203ENST00000552140 1053 ntTSL 5 BASIC5.47□□□□□ -1.53
NKX3-1Q99801 NPIPA2-203ENST00000553201 1053 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
NKX3-1Q99801 AC135626.1-201ENST00000556983 435 ntBASIC5.47□□□□□ -1.53
NKX3-1Q99801 AC093524.1-201ENST00000564266 1094 ntBASIC5.47□□□□□ -1.53
NKX3-1Q99801 AC133552.4-201ENST00000576103 676 ntBASIC5.47□□□□□ -1.53
NKX3-1Q99801 MIR3189-201ENST00000578735 73 ntBASIC5.47□□□□□ -1.53
NKX3-1Q99801 ANKRD20A5P-203ENST00000580200 566 ntTSL 5 BASIC5.47□□□□□ -1.53
NKX3-1Q99801 AC027229.1-201ENST00000583887 253 ntBASIC5.47□□□□□ -1.53
NKX3-1Q99801 AC090616.1-201ENST00000583895 447 ntBASIC5.47□□□□□ -1.53
NKX3-1Q99801 AC015911.2-201ENST00000585536 396 ntTSL 3 BASIC5.47□□□□□ -1.53
NKX3-1Q99801 ZNF814-214ENST00000600634 461 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
NKX3-1Q99801 RPS4XP21-201ENST00000603814 750 ntBASIC5.47□□□□□ -1.53
NKX3-1Q99801 DIMT1P1-201ENST00000603970 763 ntBASIC5.47□□□□□ -1.53
NKX3-1Q99801 AC073046.2-201ENST00000604756 527 ntBASIC5.47□□□□□ -1.53
NKX3-1Q99801 AC019257.2-201ENST00000605539 497 ntBASIC5.47□□□□□ -1.53
NKX3-1Q99801 AL138960.1-201ENST00000613838 513 ntBASIC5.47□□□□□ -1.53
NKX3-1Q99801 Xist_exon4.1-201ENST00000615964 126 ntBASIC5.47□□□□□ -1.53
NKX3-1Q99801 MIR6849-201ENST00000618543 69 ntBASIC5.47□□□□□ -1.53
NKX3-1Q99801 MIR6503-201ENST00000622884 86 ntBASIC5.47□□□□□ -1.53
NKX3-1Q99801 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC5.47□□□□□ -1.53
NKX3-1Q99801 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
NKX3-1Q99801 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
NKX3-1Q99801 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
NKX3-1Q99801 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC5.47□□□□□ -1.53
NKX3-1Q99801 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC5.47□□□□□ -1.53
NKX3-1Q99801 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
NKX3-1Q99801 SHQ1P1-201ENST00000437111 1544 ntBASIC5.47□□□□□ -1.53
NKX3-1Q99801 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
NKX3-1Q99801 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC5.47□□□□□ -1.53
NKX3-1Q99801 AC125238.2-201ENST00000430003 1440 ntBASIC5.47□□□□□ -1.53
NKX3-1Q99801 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC5.47□□□□□ -1.53
NKX3-1Q99801 LYPD6B-202ENST00000409029 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
NKX3-1Q99801 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC5.46□□□□□ -1.53
NKX3-1Q99801 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC5.46□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 96.8 ms