Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC6.65□□□□□ -1.34
HDAC4P56524 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
HDAC4P56524 LINC00314-201ENST00000324988 607 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
HDAC4P56524 SNORD16-201ENST00000362803 99 ntBASIC6.65□□□□□ -1.34
HDAC4P56524 RN7SKP186-201ENST00000365371 303 ntBASIC6.65□□□□□ -1.34
HDAC4P56524 AL050305.1-201ENST00000399993 1230 ntBASIC6.65□□□□□ -1.34
HDAC4P56524 RPL21P50-201ENST00000417698 477 ntBASIC6.65□□□□□ -1.34
HDAC4P56524 AC117434.1-201ENST00000419971 836 ntBASIC6.65□□□□□ -1.34
HDAC4P56524 AC002127.1-201ENST00000421305 225 ntBASIC6.65□□□□□ -1.34
HDAC4P56524 GPN3P1-201ENST00000423883 535 ntBASIC6.65□□□□□ -1.34
HDAC4P56524 AL034397.2-201ENST00000424241 857 ntTSL 2 BASIC6.65□□□□□ -1.34
HDAC4P56524 AL512363.1-201ENST00000425089 586 ntTSL 2 BASIC6.65□□□□□ -1.34
HDAC4P56524 DEFB122-201ENST00000433453 499 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
HDAC4P56524 BBIP1-205ENST00000436562 383 ntAPPRIS P1 TSL 3 BASIC6.65□□□□□ -1.34
HDAC4P56524 COX4I1P2-201ENST00000447446 547 ntBASIC6.65□□□□□ -1.34
HDAC4P56524 AC106800.3-201ENST00000511389 308 ntBASIC6.65□□□□□ -1.34
HDAC4P56524 GTF2IP11-201ENST00000526931 420 ntBASIC6.65□□□□□ -1.34
HDAC4P56524 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC6.65□□□□□ -1.34
HDAC4P56524 AC024405.1-201ENST00000532521 1042 ntBASIC6.65□□□□□ -1.34
HDAC4P56524 LINC00944-204ENST00000544499 366 ntTSL 5 BASIC6.65□□□□□ -1.34
HDAC4P56524 AC090709.1-201ENST00000548384 716 ntTSL 3 BASIC6.65□□□□□ -1.34
HDAC4P56524 RPLP0-225ENST00000552292 720 ntTSL 2 BASIC6.65□□□□□ -1.34
HDAC4P56524 C16orf97-205ENST00000568524 406 ntTSL 5 BASIC6.65□□□□□ -1.34
HDAC4P56524 AC010615.3-201ENST00000597319 394 ntBASIC6.65□□□□□ -1.34
HDAC4P56524 AL589765.6-201ENST00000601909 549 ntBASIC6.65□□□□□ -1.34
HDAC4P56524 ZNHIT3-208ENST00000619730 926 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
HDAC4P56524 AJ239318.1-201ENST00000624445 607 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
HDAC4P56524 AL596275.2-207ENST00000641188 675 ntBASIC6.65□□□□□ -1.34
HDAC4P56524 LINC02318-201ENST00000553785 1334 ntTSL 1 (best) BASIC6.65□□□□□ -1.35
HDAC4P56524 AC233968.1-201ENST00000611212 1300 ntBASIC6.65□□□□□ -1.35
HDAC4P56524 AC011815.2-201ENST00000618230 2021 ntBASIC6.65□□□□□ -1.35
HDAC4P56524 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC6.65□□□□□ -1.35
HDAC4P56524 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC6.65□□□□□ -1.35
HDAC4P56524 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC6.65□□□□□ -1.35
HDAC4P56524 AC009804.2-201ENST00000637566 3032 ntTSL 5 BASIC6.65□□□□□ -1.35
HDAC4P56524 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC6.65□□□□□ -1.35
HDAC4P56524 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC6.65□□□□□ -1.35
HDAC4P56524 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC6.65□□□□□ -1.35
HDAC4P56524 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
HDAC4P56524 AP2B1-211ENST00000610402 3204 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
HDAC4P56524 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC6.65□□□□□ -1.35
HDAC4P56524 CD200R1-201ENST00000295863 1692 ntTSL 2 BASIC6.65□□□□□ -1.35
HDAC4P56524 ZFY-202ENST00000383052 5113 ntAPPRIS P1 TSL 5 BASIC6.64□□□□□ -1.35
HDAC4P56524 CXCL8-201ENST00000307407 1705 ntAPPRIS P2 TSL 1 (best) BASIC6.64□□□□□ -1.35
HDAC4P56524 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC6.64□□□□□ -1.35
HDAC4P56524 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
HDAC4P56524 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
HDAC4P56524 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC6.64□□□□□ -1.35
HDAC4P56524 MTHFD2L-201ENST00000325278 2300 ntAPPRIS ALT2 TSL 5 BASIC6.64□□□□□ -1.35
HDAC4P56524 CTTNBP2NL-201ENST00000271277 5897 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
HDAC4P56524 DAOA-AS1-201ENST00000448407 2482 ntTSL 2 BASIC6.64□□□□□ -1.35
HDAC4P56524 AL161912.4-201ENST00000623889 2468 ntBASIC6.64□□□□□ -1.35
HDAC4P56524 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
HDAC4P56524 SPATA9-201ENST00000274432 1100 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
HDAC4P56524 GSTA5-201ENST00000284562 845 ntAPPRIS P1 TSL 5 BASIC6.64□□□□□ -1.35
HDAC4P56524 SNORA64.3-201ENST00000365647 134 ntBASIC6.64□□□□□ -1.35
HDAC4P56524 EEF1AKMT1-201ENST00000382754 875 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
HDAC4P56524 MIR323B-201ENST00000385269 82 ntBASIC6.64□□□□□ -1.35
HDAC4P56524 AC003045.1-201ENST00000398779 713 ntBASIC6.64□□□□□ -1.35
HDAC4P56524 AL158832.1-201ENST00000429661 406 ntTSL 3 BASIC6.64□□□□□ -1.35
HDAC4P56524 GTF3AP6-201ENST00000432585 986 ntBASIC6.64□□□□□ -1.35
HDAC4P56524 LINC00328-2P-201ENST00000436585 219 ntBASIC6.64□□□□□ -1.35
HDAC4P56524 H3F3BP1-201ENST00000440551 403 ntBASIC6.64□□□□□ -1.35
HDAC4P56524 RPL12P49-201ENST00000441100 121 ntBASIC6.64□□□□□ -1.35
HDAC4P56524 AL355390.2-201ENST00000446691 880 ntTSL 5 BASIC6.64□□□□□ -1.35
HDAC4P56524 AC096746.1-201ENST00000501965 1042 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
HDAC4P56524 AC139722.1-201ENST00000512502 782 ntTSL 3 BASIC6.64□□□□□ -1.35
HDAC4P56524 AC138517.1-201ENST00000515724 568 ntBASIC6.64□□□□□ -1.35
HDAC4P56524 RN7SKP70-201ENST00000516655 271 ntBASIC6.64□□□□□ -1.35
HDAC4P56524 IGHV1-14-201ENST00000523391 241 ntBASIC6.64□□□□□ -1.35
HDAC4P56524 AC135983.3-201ENST00000528049 1226 ntBASIC6.64□□□□□ -1.35
HDAC4P56524 TDGP1-201ENST00000543961 1229 ntBASIC6.64□□□□□ -1.35
HDAC4P56524 AC016257.1-201ENST00000550088 641 ntTSL 2 BASIC6.64□□□□□ -1.35
HDAC4P56524 AC107958.1-201ENST00000556576 290 ntBASIC6.64□□□□□ -1.35
HDAC4P56524 AC090286.3-201ENST00000573133 187 ntBASIC6.64□□□□□ -1.35
HDAC4P56524 AC026898.1-201ENST00000586404 571 ntBASIC6.64□□□□□ -1.35
HDAC4P56524 ZNF814-214ENST00000600634 461 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
HDAC4P56524 LAPTM4BP2-201ENST00000604542 446 ntBASIC6.64□□□□□ -1.35
HDAC4P56524 RPL12P48-201ENST00000605620 304 ntBASIC6.64□□□□□ -1.35
HDAC4P56524 BX323046.1-201ENST00000610145 535 ntBASIC6.64□□□□□ -1.35
HDAC4P56524 Metazoa_SRP.66-201ENST00000615609 282 ntBASIC6.64□□□□□ -1.35
HDAC4P56524 AC089999.3-201ENST00000622440 577 ntBASIC6.64□□□□□ -1.35
HDAC4P56524 OR14A16-202ENST00000641093 1367 ntAPPRIS P1 BASIC6.64□□□□□ -1.35
HDAC4P56524 AC125238.2-201ENST00000430003 1440 ntBASIC6.64□□□□□ -1.35
HDAC4P56524 AL592429.1-201ENST00000403909 1473 ntBASIC6.64□□□□□ -1.35
HDAC4P56524 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC6.64□□□□□ -1.35
HDAC4P56524 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
HDAC4P56524 BIN2P1-201ENST00000504996 1530 ntBASIC6.64□□□□□ -1.35
HDAC4P56524 CLEC9A-201ENST00000355819 1734 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
HDAC4P56524 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
HDAC4P56524 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
HDAC4P56524 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC6.64□□□□□ -1.35
HDAC4P56524 LDAH-212ENST00000619656 3663 ntTSL 2 BASIC6.64□□□□□ -1.35
HDAC4P56524 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
HDAC4P56524 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC6.64□□□□□ -1.35
HDAC4P56524 TEK-201ENST00000380036 4760 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
HDAC4P56524 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC6.63□□□□□ -1.35
HDAC4P56524 FASTKD1-204ENST00000453153 2967 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
HDAC4P56524 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
HDAC4P56524 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC6.63□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 91.3 ms