Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AP001885.1-201ENST00000621658 558 ntBASIC6.47□□□□□ -1.37
COL4A4P53420 AC003992.1-201ENST00000635364 557 ntBASIC6.47□□□□□ -1.37
COL4A4P53420 TMC7-202ENST00000421369 4499 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
COL4A4P53420 ARCN1-202ENST00000359415 4038 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
COL4A4P53420 SECISBP2L-201ENST00000261847 6779 ntAPPRIS P3 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL4A4P53420 NPIPB8-202ENST00000529716 2058 ntAPPRIS P1 TSL 5 BASIC6.47□□□□□ -1.37
COL4A4P53420 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
COL4A4P53420 AC096921.2-201ENST00000561507 1916 ntBASIC6.47□□□□□ -1.37
COL4A4P53420 NEK1-208ENST00000512193 4430 ntAPPRIS ALT2 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL4A4P53420 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC6.47□□□□□ -1.37
COL4A4P53420 SALL4P7-201ENST00000555779 3120 ntBASIC6.47□□□□□ -1.37
COL4A4P53420 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL4A4P53420 NUP107-211ENST00000539906 3004 ntTSL 2 BASIC6.46□□□□□ -1.37
COL4A4P53420 AC011416.1-201ENST00000514947 1732 ntBASIC6.46□□□□□ -1.37
COL4A4P53420 NEMP2-202ENST00000409150 6168 ntAPPRIS P1 TSL 2 BASIC6.46□□□□□ -1.37
COL4A4P53420 A2ML1-201ENST00000299698 5274 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.37
COL4A4P53420 MRPS23-201ENST00000313608 5621 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.37
COL4A4P53420 PGR-202ENST00000325455 13748 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.37
COL4A4P53420 AXDND1-201ENST00000367618 3642 ntAPPRIS P2 TSL 1 (best) BASIC6.46□□□□□ -1.37
COL4A4P53420 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC6.46□□□□□ -1.37
COL4A4P53420 IFNB1-201ENST00000380232 859 ntAPPRIS P1 BASIC6.46□□□□□ -1.37
COL4A4P53420 BPHL-201ENST00000380368 797 ntTSL 5 BASIC6.46□□□□□ -1.37
COL4A4P53420 OSBPL10-AS1-202ENST00000418728 458 ntTSL 5 BASIC6.46□□□□□ -1.37
COL4A4P53420 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC6.46□□□□□ -1.37
COL4A4P53420 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC6.46□□□□□ -1.37
COL4A4P53420 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC6.46□□□□□ -1.37
COL4A4P53420 AC008953.1-201ENST00000497334 318 ntBASIC6.46□□□□□ -1.37
COL4A4P53420 DPPA2P4-201ENST00000563717 878 ntBASIC6.46□□□□□ -1.37
COL4A4P53420 AC137695.1-201ENST00000604126 489 ntBASIC6.46□□□□□ -1.37
COL4A4P53420 FAM27E4-201ENST00000605259 342 ntBASIC6.46□□□□□ -1.37
COL4A4P53420 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC6.46□□□□□ -1.37
COL4A4P53420 PREPL-203ENST00000378520 2308 ntTSL 5 BASIC6.46□□□□□ -1.38
COL4A4P53420 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
COL4A4P53420 OR2T5-201ENST00000641363 2525 ntAPPRIS P1 BASIC6.46□□□□□ -1.38
COL4A4P53420 LRP1-201ENST00000243077 14897 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
COL4A4P53420 ZNF138-204ENST00000437743 2574 ntAPPRIS ALT2 TSL 1 (best) BASIC6.46□□□□□ -1.38
COL4A4P53420 AP005131.1-201ENST00000585366 4745 ntTSL 5 BASIC6.46□□□□□ -1.38
COL4A4P53420 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC6.46□□□□□ -1.38
COL4A4P53420 CNOT7-201ENST00000361272 6913 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
COL4A4P53420 NRXN3-201ENST00000281127 8504 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
COL4A4P53420 SNORA64.1-201ENST00000362600 132 ntBASIC6.45□□□□□ -1.38
COL4A4P53420 EEF1A1P29-201ENST00000416082 1096 ntBASIC6.45□□□□□ -1.38
COL4A4P53420 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC6.45□□□□□ -1.38
COL4A4P53420 LINC01780-202ENST00000457683 391 ntTSL 3 BASIC6.45□□□□□ -1.38
COL4A4P53420 RN7SL269P-201ENST00000467795 305 ntBASIC6.45□□□□□ -1.38
COL4A4P53420 AC008601.1-201ENST00000519892 527 ntTSL 4 BASIC6.45□□□□□ -1.38
COL4A4P53420 HMGN2P36-201ENST00000529541 409 ntBASIC6.45□□□□□ -1.38
COL4A4P53420 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC6.45□□□□□ -1.38
COL4A4P53420 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC6.45□□□□□ -1.38
COL4A4P53420 AC024589.2-201ENST00000605642 1294 ntBASIC6.45□□□□□ -1.38
COL4A4P53420 AL691477.1-201ENST00000624398 162 ntBASIC6.45□□□□□ -1.38
COL4A4P53420 AC119674.1-217ENST00000641942 1086 ntBASIC6.45□□□□□ -1.38
COL4A4P53420 LINC02019-201ENST00000608605 2060 ntBASIC6.45□□□□□ -1.38
COL4A4P53420 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC6.45□□□□□ -1.38
COL4A4P53420 HRH1-203ENST00000431010 4278 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL4A4P53420 LINC02177-201ENST00000564305 5298 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
COL4A4P53420 ABCA9-202ENST00000453985 6116 ntTSL 5 BASIC6.45□□□□□ -1.38
COL4A4P53420 JADE1-203ENST00000452328 5544 ntAPPRIS ALT2 TSL 2 BASIC6.45□□□□□ -1.38
COL4A4P53420 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
COL4A4P53420 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
COL4A4P53420 AP001541.1-201ENST00000623322 1904 ntBASIC6.45□□□□□ -1.38
COL4A4P53420 FAM168A-201ENST00000064778 7296 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
COL4A4P53420 DCAF5-205ENST00000554215 4803 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
COL4A4P53420 MGAT4A-201ENST00000264968 8432 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL4A4P53420 PDZK1P1-202ENST00000425209 1350 ntBASIC6.45□□□□□ -1.38
COL4A4P53420 AC119674.1-213ENST00000641177 1386 ntBASIC6.45□□□□□ -1.38
COL4A4P53420 ZNF426-201ENST00000253115 7085 ntAPPRIS P3 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL4A4P53420 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC6.45□□□□□ -1.38
COL4A4P53420 AL157831.2-201ENST00000564681 3095 ntBASIC6.45□□□□□ -1.38
COL4A4P53420 LRRC8B-203ENST00000439853 7474 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL4A4P53420 AP003170.5-201ENST00000397185 335 ntBASIC6.45□□□□□ -1.38
COL4A4P53420 LINC01687-201ENST00000416327 795 ntTSL 3 BASIC6.45□□□□□ -1.38
COL4A4P53420 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC6.45□□□□□ -1.38
COL4A4P53420 RPS12P17-201ENST00000438591 377 ntBASIC6.45□□□□□ -1.38
COL4A4P53420 VN1R110P-201ENST00000438988 971 ntBASIC6.45□□□□□ -1.38
COL4A4P53420 CYCSP51-201ENST00000443545 318 ntBASIC6.45□□□□□ -1.38
COL4A4P53420 H2AFZP6-201ENST00000444403 394 ntBASIC6.45□□□□□ -1.38
COL4A4P53420 OR5M14P-201ENST00000506803 618 ntBASIC6.45□□□□□ -1.38
COL4A4P53420 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC6.45□□□□□ -1.38
COL4A4P53420 LINC01609-202ENST00000522778 566 ntTSL 2 BASIC6.45□□□□□ -1.38
COL4A4P53420 AC006530.1-201ENST00000555980 571 ntBASIC6.45□□□□□ -1.38
COL4A4P53420 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC6.45□□□□□ -1.38
COL4A4P53420 CU639417.4-201ENST00000623928 207 ntBASIC6.45□□□□□ -1.38
COL4A4P53420 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL4A4P53420 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
COL4A4P53420 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
COL4A4P53420 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL4A4P53420 NEDD9-216ENST00000620854 4086 ntTSL 5 BASIC6.44□□□□□ -1.38
COL4A4P53420 AC001226.2-204ENST00000638101 2645 ntAPPRIS ALT2 TSL 5 BASIC6.44□□□□□ -1.38
COL4A4P53420 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC6.44□□□□□ -1.38
COL4A4P53420 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC6.44□□□□□ -1.38
COL4A4P53420 CYP2C8-201ENST00000371270 1923 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL4A4P53420 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC6.44□□□□□ -1.38
COL4A4P53420 UBAP2-201ENST00000360802 4284 ntAPPRIS P1 TSL 5 BASIC6.44□□□□□ -1.38
COL4A4P53420 DIO2-210ENST00000557010 6367 ntAPPRIS P1 TSL 2 BASIC6.44□□□□□ -1.38
COL4A4P53420 AL627309.5-201ENST00000484859 4860 ntTSL 5 BASIC6.44□□□□□ -1.38
COL4A4P53420 FSHR-202ENST00000406846 2784 ntAPPRIS P4 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL4A4P53420 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC6.44□□□□□ -1.38
COL4A4P53420 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL4A4P53420 ACSL5-203ENST00000356116 3353 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 125.3 ms