Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 RNA5SP400-201ENST00000517155 111 ntBASIC4.76□□□□□ -1.65
HLA-DMBP28068 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC4.76□□□□□ -1.65
HLA-DMBP28068 ATP6V0E1-202ENST00000517669 502 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
HLA-DMBP28068 AC116917.1-201ENST00000520558 305 ntBASIC4.76□□□□□ -1.65
HLA-DMBP28068 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC4.76□□□□□ -1.65
HLA-DMBP28068 AP001000.1-201ENST00000526843 742 ntBASIC4.76□□□□□ -1.65
HLA-DMBP28068 AP003033.2-201ENST00000528901 805 ntBASIC4.76□□□□□ -1.65
HLA-DMBP28068 TMEM116-208ENST00000549537 1229 ntAPPRIS ALT2 TSL 2 BASIC4.76□□□□□ -1.65
HLA-DMBP28068 AP001157.1-201ENST00000550837 2339 ntBASIC4.76□□□□□ -1.65
HLA-DMBP28068 AL357153.3-201ENST00000553982 611 ntTSL 3 BASIC4.76□□□□□ -1.65
HLA-DMBP28068 HNRNPCP1-201ENST00000556181 766 ntBASIC4.76□□□□□ -1.65
HLA-DMBP28068 ANKRD20A5P-203ENST00000580200 566 ntTSL 5 BASIC4.76□□□□□ -1.65
HLA-DMBP28068 ZNF137P-202ENST00000597158 308 ntTSL 3 BASIC4.76□□□□□ -1.65
HLA-DMBP28068 PCGEM1-202ENST00000606314 759 ntTSL 5 BASIC4.76□□□□□ -1.65
HLA-DMBP28068 AC068726.1-201ENST00000610993 341 ntBASIC4.76□□□□□ -1.65
HLA-DMBP28068 MALAT1-209ENST00000616691 587 ntTSL 2 BASIC4.76□□□□□ -1.65
HLA-DMBP28068 AC018628.1-201ENST00000624147 3819 ntBASIC4.76□□□□□ -1.65
HLA-DMBP28068 TEX41-293ENST00000630451 690 ntTSL 5 BASIC4.76□□□□□ -1.65
HLA-DMBP28068 AL049767.1-201ENST00000636811 514 ntTSL 5 BASIC4.76□□□□□ -1.65
HLA-DMBP28068 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
HLA-DMBP28068 CTAGE5-201ENST00000280082 2554 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
HLA-DMBP28068 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
HLA-DMBP28068 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC4.76□□□□□ -1.65
HLA-DMBP28068 SELE-204ENST00000367776 3576 ntTSL 5 BASIC4.76□□□□□ -1.65
HLA-DMBP28068 SELE-205ENST00000367777 3576 ntTSL 5 BASIC4.76□□□□□ -1.65
HLA-DMBP28068 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
HLA-DMBP28068 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC4.76□□□□□ -1.65
HLA-DMBP28068 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
HLA-DMBP28068 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
HLA-DMBP28068 NLN-202ENST00000502464 8354 ntTSL 5 BASIC4.76□□□□□ -1.65
HLA-DMBP28068 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC4.76□□□□□ -1.65
HLA-DMBP28068 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
HLA-DMBP28068 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
HLA-DMBP28068 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
HLA-DMBP28068 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
HLA-DMBP28068 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
HLA-DMBP28068 SLC10A7-204ENST00000502607 1638 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
HLA-DMBP28068 SERPINB7-206ENST00000540675 2193 ntTSL 2 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
HLA-DMBP28068 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
HLA-DMBP28068 PUS10-201ENST00000316752 2278 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
HLA-DMBP28068 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
HLA-DMBP28068 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
HLA-DMBP28068 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
HLA-DMBP28068 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 SLC2A14-203ENST00000431042 3458 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
HLA-DMBP28068 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 FAM183A-201ENST00000335282 488 ntAPPRIS P1 TSL 2 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 RN7SKP250-201ENST00000363924 321 ntBASIC4.75□□□□□ -1.65
HLA-DMBP28068 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 RFPL3S-201ENST00000382084 1117 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
HLA-DMBP28068 TRAV13-1-201ENST00000390436 360 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 SULT6B1-201ENST00000407963 902 ntTSL 5 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 FAM183A-205ENST00000410048 500 ntTSL 3 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 RNU2-18P-201ENST00000411224 162 ntBASIC4.75□□□□□ -1.65
HLA-DMBP28068 TEX50-201ENST00000417563 821 ntAPPRIS P1 TSL 2 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 AL139184.1-202ENST00000422303 222 ntBASIC4.75□□□□□ -1.65
HLA-DMBP28068 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 GPN3P1-201ENST00000423883 535 ntBASIC4.75□□□□□ -1.65
HLA-DMBP28068 OR6R1P-201ENST00000431838 940 ntBASIC4.75□□□□□ -1.65
HLA-DMBP28068 AL049594.1-201ENST00000432834 805 ntTSL 3 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 MIR205HG-206ENST00000440276 539 ntTSL 5 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 AC095033.1-201ENST00000451611 1096 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
HLA-DMBP28068 CT45A5-201ENST00000487941 1161 ntAPPRIS P1 TSL 2 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 LINC02025-201ENST00000488348 360 ntTSL 3 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 AC018645.1-201ENST00000505003 109 ntBASIC4.75□□□□□ -1.65
HLA-DMBP28068 BFSP2-AS1-201ENST00000515542 894 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
HLA-DMBP28068 AP001208.1-201ENST00000518612 408 ntTSL 3 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 AP000842.2-202ENST00000526211 569 ntTSL 4 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 AC084855.1-201ENST00000528696 572 ntTSL 2 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 SNHG1-212ENST00000539975 955 ntTSL 5 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 MYL2-203ENST00000548438 664 ntTSL 3 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 AC009387.1-201ENST00000549163 441 ntTSL 3 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 AC023905.1-201ENST00000559799 1178 ntTSL 2 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 AC105243.1-201ENST00000563172 1165 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
HLA-DMBP28068 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 OR7A8P-201ENST00000595427 913 ntBASIC4.75□□□□□ -1.65
HLA-DMBP28068 AC011500.1-201ENST00000601963 469 ntBASIC4.75□□□□□ -1.65
HLA-DMBP28068 LIPF-205ENST00000608620 1290 ntTSL 2 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 AC083798.2-201ENST00000608756 1152 ntTSL 4 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 AC006924.1-201ENST00000610750 559 ntBASIC4.75□□□□□ -1.65
HLA-DMBP28068 AC089999.3-201ENST00000622440 577 ntBASIC4.75□□□□□ -1.65
HLA-DMBP28068 AC079298.3-201ENST00000624941 977 ntTSL 3 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 AC119674.1-217ENST00000641942 1086 ntBASIC4.75□□□□□ -1.65
HLA-DMBP28068 AL020995.1-201ENST00000427524 1680 ntTSL 2 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 LINC01822-201ENST00000435682 2098 ntTSL 2 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 GTF2IP4-201ENST00000453092 2054 ntBASIC4.75□□□□□ -1.65
HLA-DMBP28068 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC4.75□□□□□ -1.65
HLA-DMBP28068 AC096921.2-201ENST00000561507 1916 ntBASIC4.75□□□□□ -1.65
HLA-DMBP28068 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
HLA-DMBP28068 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
HLA-DMBP28068 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC4.75□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 87.4 ms