Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 CAV1-204ENST00000393470 598 ntTSL 4 BASIC6.24□□□□□ -1.41
MSH3P20585 TMA16P2-201ENST00000413187 601 ntBASIC6.24□□□□□ -1.41
MSH3P20585 AL359885.1-201ENST00000415786 903 ntBASIC6.24□□□□□ -1.41
MSH3P20585 AL807757.2-201ENST00000416455 779 ntTSL 3 BASIC6.24□□□□□ -1.41
MSH3P20585 AL121823.1-201ENST00000418369 741 ntTSL 3 BASIC6.24□□□□□ -1.41
MSH3P20585 RPS17P17-201ENST00000419392 409 ntBASIC6.24□□□□□ -1.41
MSH3P20585 AL136979.1-201ENST00000421645 1120 ntTSL 3 BASIC6.24□□□□□ -1.41
MSH3P20585 RPL7AP14-201ENST00000424041 802 ntBASIC6.24□□□□□ -1.41
MSH3P20585 AL139158.1-201ENST00000424719 340 ntBASIC6.24□□□□□ -1.41
MSH3P20585 AC112492.2-201ENST00000432774 1030 ntBASIC6.24□□□□□ -1.41
MSH3P20585 CLNS1AP1-201ENST00000435954 682 ntBASIC6.24□□□□□ -1.41
MSH3P20585 SOCS5P1-201ENST00000440415 949 ntBASIC6.24□□□□□ -1.41
MSH3P20585 AL645936.1-201ENST00000441979 518 ntBASIC6.24□□□□□ -1.41
MSH3P20585 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
MSH3P20585 AC092967.1-201ENST00000449016 481 ntBASIC6.24□□□□□ -1.41
MSH3P20585 AC011625.1-201ENST00000455442 526 ntTSL 4 BASIC6.24□□□□□ -1.41
MSH3P20585 YRDCP3-201ENST00000456507 480 ntBASIC6.24□□□□□ -1.41
MSH3P20585 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC6.24□□□□□ -1.41
MSH3P20585 UCK2-205ENST00000469256 753 ntTSL 3 BASIC6.24□□□□□ -1.41
MSH3P20585 RN7SL326P-201ENST00000477493 296 ntBASIC6.24□□□□□ -1.41
MSH3P20585 RPL12P31-201ENST00000478433 450 ntBASIC6.24□□□□□ -1.41
MSH3P20585 LINC02374-201ENST00000503637 743 ntTSL 3 BASIC6.24□□□□□ -1.41
MSH3P20585 AC113367.2-201ENST00000505749 160 ntBASIC6.24□□□□□ -1.41
MSH3P20585 AC010445.1-201ENST00000507674 440 ntTSL 5 BASIC6.24□□□□□ -1.41
MSH3P20585 KHDC1P1-201ENST00000511053 508 ntBASIC6.24□□□□□ -1.41
MSH3P20585 RNA5SP206-201ENST00000516703 121 ntBASIC6.24□□□□□ -1.41
MSH3P20585 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC6.24□□□□□ -1.41
MSH3P20585 AP005436.1-201ENST00000531454 488 ntTSL 2 BASIC6.24□□□□□ -1.41
MSH3P20585 NPIPB14P-203ENST00000532298 987 ntBASIC6.24□□□□□ -1.41
MSH3P20585 AP000593.3-201ENST00000546065 578 ntTSL 2 BASIC6.24□□□□□ -1.41
MSH3P20585 AC078922.1-201ENST00000547547 434 ntTSL 3 BASIC6.24□□□□□ -1.41
MSH3P20585 MYL2-203ENST00000548438 664 ntTSL 3 BASIC6.24□□□□□ -1.41
MSH3P20585 AC092652.2-201ENST00000552220 622 ntTSL 4 BASIC6.24□□□□□ -1.41
MSH3P20585 AC090970.1-201ENST00000561207 381 ntTSL 5 BASIC6.24□□□□□ -1.41
MSH3P20585 RORA-AS2-202ENST00000561413 576 ntTSL 4 BASIC6.24□□□□□ -1.41
MSH3P20585 AC004034.1-201ENST00000573260 510 ntTSL 3 BASIC6.24□□□□□ -1.41
MSH3P20585 AC083798.2-201ENST00000608756 1152 ntTSL 4 BASIC6.24□□□□□ -1.41
MSH3P20585 AC006924.1-201ENST00000610750 559 ntBASIC6.24□□□□□ -1.41
MSH3P20585 uc_338.29-201ENST00000615099 168 ntBASIC6.24□□□□□ -1.41
MSH3P20585 AL391095.2-201ENST00000615228 378 ntTSL 3 BASIC6.24□□□□□ -1.41
MSH3P20585 LINC01435-220ENST00000630847 714 ntTSL 5 BASIC6.24□□□□□ -1.41
MSH3P20585 AF067845.4-201ENST00000633198 480 ntTSL 3 BASIC6.24□□□□□ -1.41
MSH3P20585 5S_rRNA.29-201ENST00000641250 107 ntBASIC6.24□□□□□ -1.41
MSH3P20585 DDX6-207ENST00000617381 2883 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
MSH3P20585 AC079753.1-201ENST00000623243 3868 ntBASIC6.24□□□□□ -1.41
MSH3P20585 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC6.24□□□□□ -1.41
MSH3P20585 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
MSH3P20585 BIN2P1-201ENST00000504996 1530 ntBASIC6.24□□□□□ -1.41
MSH3P20585 INTS12-211ENST00000618810 1502 ntAPPRIS P1 TSL 5 BASIC6.24□□□□□ -1.41
MSH3P20585 GUCY1B2-204ENST00000531898 1979 ntBASIC6.24□□□□□ -1.41
MSH3P20585 AC009404.1-201ENST00000420330 3090 ntTSL 3 BASIC6.24□□□□□ -1.41
MSH3P20585 CADM2-202ENST00000405615 1314 ntAPPRIS P3 TSL 1 (best) BASIC6.24□□□□□ -1.41
MSH3P20585 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
MSH3P20585 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
MSH3P20585 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
MSH3P20585 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC6.23□□□□□ -1.41
MSH3P20585 AP004289.1-201ENST00000436307 2205 ntBASIC6.23□□□□□ -1.41
MSH3P20585 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
MSH3P20585 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
MSH3P20585 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC6.23□□□□□ -1.41
MSH3P20585 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
MSH3P20585 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC6.23□□□□□ -1.41
MSH3P20585 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC6.23□□□□□ -1.41
MSH3P20585 RRH-201ENST00000317735 1455 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
MSH3P20585 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
MSH3P20585 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
MSH3P20585 GSTA5-201ENST00000284562 845 ntAPPRIS P1 TSL 5 BASIC6.23□□□□□ -1.41
MSH3P20585 SMR3B-201ENST00000304915 785 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
MSH3P20585 SNORA70.9-201ENST00000384370 135 ntBASIC6.23□□□□□ -1.41
MSH3P20585 AL157702.1-201ENST00000398764 426 ntBASIC6.23□□□□□ -1.41
MSH3P20585 AC104777.1-202ENST00000413247 774 ntTSL 5 BASIC6.23□□□□□ -1.41
MSH3P20585 CYP4F30P-202ENST00000420048 405 ntBASIC6.23□□□□□ -1.41
MSH3P20585 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
MSH3P20585 OR6C71P-201ENST00000432580 913 ntBASIC6.23□□□□□ -1.41
MSH3P20585 AC108488.1-202ENST00000439547 482 ntTSL 3 BASIC6.23□□□□□ -1.41
MSH3P20585 LINC01449-201ENST00000440213 1220 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
MSH3P20585 MORF4-201ENST00000447135 971 ntBASIC6.23□□□□□ -1.41
MSH3P20585 AP002856.1-201ENST00000447864 562 ntTSL 4 BASIC6.23□□□□□ -1.41
MSH3P20585 AC073409.1-201ENST00000451749 269 ntTSL 3 BASIC6.23□□□□□ -1.41
MSH3P20585 AC002075.1-201ENST00000457396 676 ntBASIC6.23□□□□□ -1.41
MSH3P20585 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC6.23□□□□□ -1.41
MSH3P20585 OR4D12P-201ENST00000509361 911 ntBASIC6.23□□□□□ -1.41
MSH3P20585 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC6.23□□□□□ -1.41
MSH3P20585 RNA5SP400-201ENST00000517155 111 ntBASIC6.23□□□□□ -1.41
MSH3P20585 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC6.23□□□□□ -1.41
MSH3P20585 LACTB2-AS1-203ENST00000518553 817 ntTSL 5 BASIC6.23□□□□□ -1.41
MSH3P20585 AP003469.1-202ENST00000521884 478 ntTSL 2 BASIC6.23□□□□□ -1.41
MSH3P20585 GOLT1B-205ENST00000540141 1055 ntAPPRIS ALT1 TSL 4 BASIC6.23□□□□□ -1.41
MSH3P20585 MIR6889-201ENST00000613185 59 ntBASIC6.23□□□□□ -1.41
MSH3P20585 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC6.23□□□□□ -1.41
MSH3P20585 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
MSH3P20585 MAPK10-287ENST00000641217 3037 ntBASIC6.23□□□□□ -1.41
MSH3P20585 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC6.23□□□□□ -1.41
MSH3P20585 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC6.23□□□□□ -1.41
MSH3P20585 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC6.23□□□□□ -1.41
MSH3P20585 THRB-IT1-201ENST00000425296 1754 ntTSL 2 BASIC6.23□□□□□ -1.41
MSH3P20585 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
MSH3P20585 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
MSH3P20585 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC6.23□□□□□ -1.41
MSH3P20585 NLGN1-202ENST00000401917 1827 ntTSL 5 BASIC6.22□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 87.3 ms