Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 PA2G4P1-201ENST00000442248 1197 ntBASIC5.83□□□□□ -1.48
SDC1P18827 AC092601.1-201ENST00000444526 383 ntBASIC5.83□□□□□ -1.48
SDC1P18827 AL162739.1-201ENST00000450606 307 ntBASIC5.83□□□□□ -1.48
SDC1P18827 RAB7A-208ENST00000493186 329 ntTSL 5 BASIC5.83□□□□□ -1.48
SDC1P18827 AC131094.1-201ENST00000506984 490 ntTSL 2 BASIC5.83□□□□□ -1.48
SDC1P18827 LINC02503-201ENST00000510505 812 ntTSL 2 BASIC5.83□□□□□ -1.48
SDC1P18827 LINC02196-201ENST00000512838 568 ntTSL 4 BASIC5.83□□□□□ -1.48
SDC1P18827 NATP-201ENST00000523491 878 ntBASIC5.83□□□□□ -1.48
SDC1P18827 AC016405.1-202ENST00000524348 758 ntTSL 3 BASIC5.83□□□□□ -1.48
SDC1P18827 AL049779.3-201ENST00000557141 606 ntBASIC5.83□□□□□ -1.48
SDC1P18827 HMGN1P26-201ENST00000558737 303 ntBASIC5.83□□□□□ -1.48
SDC1P18827 AC092376.1-201ENST00000569677 335 ntTSL 2 BASIC5.83□□□□□ -1.48
SDC1P18827 DSG1-AS1-202ENST00000578477 588 ntTSL 3 BASIC5.83□□□□□ -1.48
SDC1P18827 MIR3157-201ENST00000578688 85 ntBASIC5.83□□□□□ -1.48
SDC1P18827 AL132655.1-201ENST00000601795 1153 ntTSL 3 BASIC5.83□□□□□ -1.48
SDC1P18827 AC244205.1-201ENST00000624935 705 ntTSL 2 BASIC5.83□□□□□ -1.48
SDC1P18827 OXSM-209ENST00000626005 309 ntTSL 3 BASIC5.83□□□□□ -1.48
SDC1P18827 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
SDC1P18827 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC5.83□□□□□ -1.48
SDC1P18827 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SDC1P18827 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
SDC1P18827 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC5.83□□□□□ -1.48
SDC1P18827 AC018717.1-201ENST00000457712 1505 ntBASIC5.83□□□□□ -1.48
SDC1P18827 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SDC1P18827 NAT1-210ENST00000545197 1827 ntTSL 5 BASIC5.83□□□□□ -1.48
SDC1P18827 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SDC1P18827 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SDC1P18827 NLN-202ENST00000502464 8354 ntTSL 5 BASIC5.83□□□□□ -1.48
SDC1P18827 OFD1P17-201ENST00000437639 3018 ntBASIC5.82□□□□□ -1.48
SDC1P18827 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
SDC1P18827 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
SDC1P18827 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
SDC1P18827 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
SDC1P18827 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
SDC1P18827 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
SDC1P18827 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC5.82□□□□□ -1.48
SDC1P18827 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
SDC1P18827 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
SDC1P18827 EIF3EP1-201ENST00000433978 1316 ntBASIC5.82□□□□□ -1.48
SDC1P18827 RNA5SP375-201ENST00000362975 119 ntBASIC5.82□□□□□ -1.48
SDC1P18827 PSMD10-206ENST00000372296 878 ntTSL 5 BASIC5.82□□□□□ -1.48
SDC1P18827 AL121977.1-201ENST00000401636 979 ntBASIC5.82□□□□□ -1.48
SDC1P18827 PRELID1P1-201ENST00000403549 660 ntBASIC5.82□□□□□ -1.48
SDC1P18827 SNORA77.2-201ENST00000408571 112 ntBASIC5.82□□□□□ -1.48
SDC1P18827 LINC00352-201ENST00000425800 552 ntTSL 3 BASIC5.82□□□□□ -1.48
SDC1P18827 AC005532.1-201ENST00000430266 471 ntTSL 5 BASIC5.82□□□□□ -1.48
SDC1P18827 AC073257.1-201ENST00000432474 523 ntTSL 4 BASIC5.82□□□□□ -1.48
SDC1P18827 AC013403.1-201ENST00000436954 263 ntBASIC5.82□□□□□ -1.48
SDC1P18827 RBMY2HP-201ENST00000457961 720 ntBASIC5.82□□□□□ -1.48
SDC1P18827 LINC02083-201ENST00000462835 515 ntTSL 3 BASIC5.82□□□□□ -1.48
SDC1P18827 NDUFB2-210ENST00000475276 539 ntTSL 4 BASIC5.82□□□□□ -1.48
SDC1P18827 AC090142.2-201ENST00000483263 416 ntBASIC5.82□□□□□ -1.48
SDC1P18827 RPL34P33-201ENST00000486062 334 ntBASIC5.82□□□□□ -1.48
SDC1P18827 AC004063.1-201ENST00000508358 547 ntTSL 4 BASIC5.82□□□□□ -1.48
SDC1P18827 MGC32805-204ENST00000509993 783 ntTSL 2 BASIC5.82□□□□□ -1.48
SDC1P18827 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC5.82□□□□□ -1.48
SDC1P18827 AC004034.1-201ENST00000573260 510 ntTSL 3 BASIC5.82□□□□□ -1.48
SDC1P18827 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC5.82□□□□□ -1.48
SDC1P18827 CT45A3-202ENST00000598716 855 ntAPPRIS P1 TSL 3 BASIC5.82□□□□□ -1.48
SDC1P18827 AC135983.2-201ENST00000604301 628 ntTSL 5 BASIC5.82□□□□□ -1.48
SDC1P18827 AL122023.1-201ENST00000622847 530 ntBASIC5.82□□□□□ -1.48
SDC1P18827 MVP-219ENST00000629059 120 ntTSL 5 BASIC5.82□□□□□ -1.48
SDC1P18827 TEX41-279ENST00000629149 609 ntTSL 5 BASIC5.82□□□□□ -1.48
SDC1P18827 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
SDC1P18827 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
SDC1P18827 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
SDC1P18827 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
SDC1P18827 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
SDC1P18827 RRH-201ENST00000317735 1455 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
SDC1P18827 RBMS2-202ENST00000542360 1484 ntTSL 2 BASIC5.82□□□□□ -1.48
SDC1P18827 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
SDC1P18827 ADAM5-208ENST00000505455 1998 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
SDC1P18827 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
SDC1P18827 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SDC1P18827 Z95114.1-201ENST00000624264 14574 ntBASIC5.81□□□□□ -1.48
SDC1P18827 LIPF-201ENST00000238983 1376 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SDC1P18827 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SDC1P18827 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SDC1P18827 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
SDC1P18827 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SDC1P18827 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC5.81□□□□□ -1.48
SDC1P18827 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SDC1P18827 SNORD1C-201ENST00000363315 78 ntBASIC5.81□□□□□ -1.48
SDC1P18827 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC5.81□□□□□ -1.48
SDC1P18827 IGLV3-16-201ENST00000390311 385 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
SDC1P18827 AL137847.1-201ENST00000416473 444 ntTSL 2 BASIC5.81□□□□□ -1.48
SDC1P18827 OR3D1P-201ENST00000438288 955 ntBASIC5.81□□□□□ -1.48
SDC1P18827 TNS3-209ENST00000458317 1156 ntTSL 5 BASIC5.81□□□□□ -1.48
SDC1P18827 AC128716.1-201ENST00000475129 166 ntBASIC5.81□□□□□ -1.48
SDC1P18827 AC124945.1-201ENST00000485133 188 ntBASIC5.81□□□□□ -1.48
SDC1P18827 AC117500.1-201ENST00000497352 755 ntBASIC5.81□□□□□ -1.48
SDC1P18827 AC021151.1-201ENST00000506933 183 ntTSL 3 BASIC5.81□□□□□ -1.48
SDC1P18827 LINC01091-201ENST00000508111 645 ntTSL 5 BASIC5.81□□□□□ -1.48
SDC1P18827 AC090958.1-201ENST00000511122 351 ntBASIC5.81□□□□□ -1.48
SDC1P18827 RNA5SP434-201ENST00000516647 121 ntBASIC5.81□□□□□ -1.48
SDC1P18827 AC040970.1-202ENST00000517908 505 ntTSL 3 BASIC5.81□□□□□ -1.48
SDC1P18827 COX6C-205ENST00000520468 1098 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SDC1P18827 H2AFV-208ENST00000521529 439 ntTSL 5 BASIC5.81□□□□□ -1.48
SDC1P18827 C5orf58-205ENST00000524171 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
SDC1P18827 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 92.9 ms