Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 RPL6P24-201ENST00000445338 864 ntBASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 Z73417.1-201ENST00000447373 778 ntBASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 DLG5-AS1-201ENST00000449852 487 ntTSL 2 BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 RPL5P12-201ENST00000477071 851 ntBASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 AC093719.1-201ENST00000480427 441 ntBASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 AL591122.1-201ENST00000487348 492 ntBASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 GLYCTK-AS1-203ENST00000493616 445 ntTSL 3 BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 MRPL49P1-201ENST00000505951 535 ntBASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 LECT2-203ENST00000512872 762 ntTSL 5 BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 C14orf159-213ENST00000519019 834 ntTSL 3 BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 EEF1B2P2-201ENST00000519625 676 ntBASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 AC104115.2-201ENST00000523026 687 ntBASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 AC026979.2-201ENST00000523733 583 ntTSL 5 BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 AC023078.5-201ENST00000528646 707 ntTSL 3 BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 NDUFA3P2-201ENST00000531434 232 ntBASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 OR4A21P-201ENST00000532759 944 ntBASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 AL132640.2-202ENST00000559732 614 ntBASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 AC090181.1-201ENST00000560446 264 ntTSL 3 BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 AC005070.2-201ENST00000604391 260 ntBASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 CYCSP41-201ENST00000616920 296 ntBASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 AP003789.1-201ENST00000617737 605 ntBASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 ZRANB2-AS2-220ENST00000623721 1133 ntTSL 5 BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 AC018659.2-201ENST00000624690 715 ntBASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 AC239809.3-202ENST00000628902 686 ntTSL 5 BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 SLC10A5P1-201ENST00000379063 1306 ntBASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 HPS5-205ENST00000438420 4147 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 AC121761.1-201ENST00000547326 1482 ntTSL 3 BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 OSBPL1A-202ENST00000357041 1869 ntTSL 2 BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 RIOK2-202ENST00000508447 2149 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 EXD1-202ENST00000458580 2177 ntAPPRIS ALT2 TSL 2 BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 FAM208A-210ENST00000614531 3441 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 PHYHIPL-201ENST00000373878 3569 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 ZNF761-202ENST00000432094 4061 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 XIAP-205ENST00000434753 8415 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
CCDC39Q9UFE4 OSBPL6-207ENST00000409631 3273 ntTSL 1 (best) BASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 ALG10-201ENST00000266483 3128 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 AC079949.2-201ENST00000617117 2933 ntBASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 PARP4P1-201ENST00000435945 2337 ntBASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 AP001157.1-201ENST00000550837 2339 ntBASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 NFIB-221ENST00000637742 2166 ntTSL 5 BASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 LINC01527-201ENST00000419578 1997 ntTSL 1 (best) BASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 PEAK1-202ENST00000558305 4644 ntTSL 4 BASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 LYSMD3-201ENST00000315948 4259 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 CADM2-202ENST00000405615 1314 ntAPPRIS P3 TSL 1 (best) BASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 RUNX1T1-234ENST00000521553 1346 ntTSL 1 (best) BASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 U3.14-201ENST00000365363 227 ntBASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 AL445238.1-204ENST00000400311 463 ntBASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 BTF3L4P1-201ENST00000413813 468 ntBASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 LINC00362-201ENST00000414345 264 ntTSL 2 BASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 LINC00266-1-202ENST00000425473 629 ntTSL 5 BASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 AL591503.2-201ENST00000442314 1005 ntBASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 AL136528.1-201ENST00000443034 754 ntTSL 3 BASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 LINC01638-202ENST00000444114 637 ntTSL 2 BASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 AC092421.1-201ENST00000448148 418 ntBASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 RPL7P55-201ENST00000450522 746 ntBASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 AC108463.2-201ENST00000451230 412 ntTSL 5 BASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 RPL34P34-201ENST00000465389 354 ntBASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 NDUFA5P5-201ENST00000468361 342 ntBASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 AC245041.2-201ENST00000479781 376 ntTSL 5 BASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 SYT14P1-201ENST00000481459 721 ntBASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 H3F3AP3-201ENST00000497682 407 ntBASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 AC091860.1-201ENST00000505723 432 ntBASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 RNU6-311P-201ENST00000516224 102 ntBASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 AC105185.1-201ENST00000518705 535 ntBASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 AC087373.1-201ENST00000524920 491 ntBASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 AC084851.2-201ENST00000530377 364 ntBASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 MS4A3-208ENST00000534744 507 ntTSL 1 (best) BASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 PSMC1P8-201ENST00000536820 1296 ntBASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 ASB8-207ENST00000536953 923 ntTSL 2 BASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 AC027288.1-201ENST00000548359 816 ntTSL 3 BASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 AC092375.1-201ENST00000550410 637 ntBASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 ACTG1P15-201ENST00000570019 1063 ntBASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 AP000919.1-202ENST00000581139 1264 ntBASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 AC009950.1-209ENST00000595586 777 ntTSL 5 BASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 AL050403.2-202ENST00000603462 492 ntTSL 5 BASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 AC135178.6-201ENST00000605314 398 ntBASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 AC019080.4-201ENST00000606200 564 ntTSL 5 BASIC7.9□□□□□ -1.14
CCDC39Q9UFE4 MIR6726-201ENST00000613751 61 ntBASIC7.9□□□□□ -1.14
Retrieved 100 of 98,524 protein–RNA pairs in 72.3 ms