Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 OR52B5P-202ENST00000641118 1110 ntBASIC5.79□□□□□ -1.48
VPS13AQ96RL7 HIP1-201ENST00000336926 8013 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 FO082842.1-201ENST00000423552 1370 ntBASIC5.79□□□□□ -1.48
VPS13AQ96RL7 OR1D2-203ENST00000641833 4887 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 RNF152-201ENST00000312828 9501 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 SLC30A8-201ENST00000427715 5430 ntTSL 2 BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 AC131649.2-201ENST00000624925 4439 ntBASIC5.79□□□□□ -1.48
VPS13AQ96RL7 ABHD18-201ENST00000388795 5450 ntTSL 5 BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 ADAM20P1-202ENST00000556964 3034 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 SALL4P7-201ENST00000555779 3120 ntBASIC5.79□□□□□ -1.48
VPS13AQ96RL7 EIF4ENIF1-205ENST00000397523 3420 ntTSL 5 BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 MEF2A-205ENST00000557942 5413 ntTSL 5 BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 MED23-201ENST00000354577 4581 ntAPPRIS ALT1 TSL 1 (best) BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 SLIT3-202ENST00000404867 8903 ntTSL 5 BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 AC068481.1-201ENST00000415520 530 ntTSL 4 BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 AC022832.1-201ENST00000530718 645 ntBASIC5.79□□□□□ -1.48
VPS13AQ96RL7 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 AP000346.3-201ENST00000622821 210 ntBASIC5.79□□□□□ -1.48
VPS13AQ96RL7 SIPA1L2-203ENST00000366630 6690 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 CSNK1G1-202ENST00000561349 1756 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 EML5-201ENST00000380664 5910 ntTSL 5 BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 AL023495.1-201ENST00000413005 1923 ntTSL 2 BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
VPS13AQ96RL7 PEG10-202ENST00000482108 6618 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
VPS13AQ96RL7 RALBP1-206ENST00000609094 3676 ntTSL 2 BASIC5.78□□□□□ -1.48
VPS13AQ96RL7 POGZ-203ENST00000368863 6054 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
VPS13AQ96RL7 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
VPS13AQ96RL7 CBLB-205ENST00000407712 1493 ntTSL 2 BASIC5.78□□□□□ -1.48
VPS13AQ96RL7 SLFN13-211ENST00000542635 5921 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
VPS13AQ96RL7 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
VPS13AQ96RL7 AC016582.3-202ENST00000443870 6580 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
VPS13AQ96RL7 PSMC1P2-201ENST00000423961 1204 ntBASIC5.78□□□□□ -1.48
VPS13AQ96RL7 AC009237.1-201ENST00000442127 744 ntBASIC5.78□□□□□ -1.48
VPS13AQ96RL7 RPL31P44-201ENST00000447680 377 ntBASIC5.78□□□□□ -1.48
VPS13AQ96RL7 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC5.78□□□□□ -1.48
VPS13AQ96RL7 HMGB1P42-201ENST00000532126 553 ntBASIC5.78□□□□□ -1.48
VPS13AQ96RL7 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
VPS13AQ96RL7 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC5.78□□□□□ -1.48
VPS13AQ96RL7 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC5.78□□□□□ -1.48
VPS13AQ96RL7 FAM216B-202ENST00000537894 3300 ntAPPRIS P1 TSL 4 BASIC5.78□□□□□ -1.48
VPS13AQ96RL7 PDE4DIP-219ENST00000524974 8305 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
VPS13AQ96RL7 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC5.78□□□□□ -1.48
VPS13AQ96RL7 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
VPS13AQ96RL7 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
VPS13AQ96RL7 LINC00907-205ENST00000589068 1812 ntTSL 2 BASIC5.78□□□□□ -1.48
VPS13AQ96RL7 EEF1A1P24-201ENST00000451469 1378 ntBASIC5.78□□□□□ -1.48
VPS13AQ96RL7 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC5.78□□□□□ -1.48
VPS13AQ96RL7 AL354868.1-201ENST00000417077 482 ntBASIC5.78□□□□□ -1.48
VPS13AQ96RL7 PRUNEP1-201ENST00000425846 705 ntBASIC5.78□□□□□ -1.48
VPS13AQ96RL7 RN7SL561P-201ENST00000488553 281 ntBASIC5.78□□□□□ -1.48
VPS13AQ96RL7 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC5.78□□□□□ -1.48
VPS13AQ96RL7 NMNAT1P5-201ENST00000559657 841 ntBASIC5.78□□□□□ -1.48
VPS13AQ96RL7 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC5.78□□□□□ -1.48
VPS13AQ96RL7 TVP23B-209ENST00000581733 1258 ntTSL 5 BASIC5.78□□□□□ -1.48
VPS13AQ96RL7 AL390318.1-201ENST00000624564 687 ntBASIC5.78□□□□□ -1.48
VPS13AQ96RL7 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC5.78□□□□□ -1.48
VPS13AQ96RL7 ZDHHC21-201ENST00000380916 9160 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
VPS13AQ96RL7 KANSL3-206ENST00000431828 5153 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
VPS13AQ96RL7 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.48
VPS13AQ96RL7 Y_RNA.126-201ENST00000363382 111 ntBASIC5.77□□□□□ -1.49
VPS13AQ96RL7 MIR433-201ENST00000384837 93 ntBASIC5.77□□□□□ -1.49
VPS13AQ96RL7 AL022100.2-201ENST00000422548 389 ntTSL 3 BASIC5.77□□□□□ -1.49
VPS13AQ96RL7 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC5.77□□□□□ -1.49
VPS13AQ96RL7 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC5.77□□□□□ -1.49
VPS13AQ96RL7 NUTF2P7-201ENST00000453086 375 ntBASIC5.77□□□□□ -1.49
VPS13AQ96RL7 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC5.77□□□□□ -1.49
VPS13AQ96RL7 C1orf105-204ENST00000460397 462 ntTSL 3 BASIC5.77□□□□□ -1.49
VPS13AQ96RL7 RPL5P22-201ENST00000480199 884 ntBASIC5.77□□□□□ -1.49
VPS13AQ96RL7 LINC02059-201ENST00000503843 452 ntTSL 3 BASIC5.77□□□□□ -1.49
VPS13AQ96RL7 UBE2Q2P10-201ENST00000514854 900 ntBASIC5.77□□□□□ -1.49
VPS13AQ96RL7 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC5.77□□□□□ -1.49
VPS13AQ96RL7 AC006116.3-201ENST00000592968 361 ntBASIC5.77□□□□□ -1.49
VPS13AQ96RL7 AC020910.2-201ENST00000603635 610 ntBASIC5.77□□□□□ -1.49
VPS13AQ96RL7 AC245389.2-201ENST00000616023 576 ntBASIC5.77□□□□□ -1.49
VPS13AQ96RL7 AC242843.1-201ENST00000618702 573 ntBASIC5.77□□□□□ -1.49
VPS13AQ96RL7 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
VPS13AQ96RL7 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
VPS13AQ96RL7 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC5.77□□□□□ -1.49
VPS13AQ96RL7 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC5.77□□□□□ -1.49
VPS13AQ96RL7 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC5.77□□□□□ -1.49
VPS13AQ96RL7 SZT2-209ENST00000562955 13968 ntAPPRIS P2 TSL 5 BASIC5.77□□□□□ -1.49
VPS13AQ96RL7 CHMP1B2P-201ENST00000399581 597 ntBASIC5.77□□□□□ -1.49
VPS13AQ96RL7 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC5.77□□□□□ -1.49
VPS13AQ96RL7 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC5.77□□□□□ -1.49
VPS13AQ96RL7 RPL7L1P9-201ENST00000431298 745 ntBASIC5.77□□□□□ -1.49
VPS13AQ96RL7 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC5.77□□□□□ -1.49
VPS13AQ96RL7 AC104996.1-201ENST00000583250 591 ntTSL 5 BASIC5.77□□□□□ -1.49
VPS13AQ96RL7 AC091953.3-201ENST00000623220 236 ntBASIC5.77□□□□□ -1.49
VPS13AQ96RL7 OR4C1P-202ENST00000641065 1569 ntBASIC5.77□□□□□ -1.49
VPS13AQ96RL7 STAMBPL1-201ENST00000371922 1899 ntTSL 2 BASIC5.77□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 108.3 ms