Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC6.59□□□□□ -1.35
CCDC42Q96M95 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC6.59□□□□□ -1.35
CCDC42Q96M95 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
CCDC42Q96M95 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC6.59□□□□□ -1.35
CCDC42Q96M95 AC008163.1-201ENST00000636281 1455 ntTSL 5 BASIC6.59□□□□□ -1.36
CCDC42Q96M95 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC6.59□□□□□ -1.36
CCDC42Q96M95 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC6.59□□□□□ -1.36
CCDC42Q96M95 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC6.59□□□□□ -1.36
CCDC42Q96M95 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC6.59□□□□□ -1.36
CCDC42Q96M95 LZIC-203ENST00000400903 1405 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
CCDC42Q96M95 ATXN2-202ENST00000389153 3854 ntAPPRIS ALT2 TSL 5 BASIC6.58□□□□□ -1.36
CCDC42Q96M95 CLEC12B-202ENST00000396502 3029 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
CCDC42Q96M95 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC6.58□□□□□ -1.36
CCDC42Q96M95 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
CCDC42Q96M95 RUNX1T1-234ENST00000521553 1346 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
CCDC42Q96M95 KYNUP3-201ENST00000574386 1341 ntBASIC6.58□□□□□ -1.36
CCDC42Q96M95 Z95114.1-201ENST00000624264 14574 ntBASIC6.58□□□□□ -1.36
CCDC42Q96M95 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC6.58□□□□□ -1.36
CCDC42Q96M95 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC6.58□□□□□ -1.36
CCDC42Q96M95 RGPD1-206ENST00000641458 5271 ntAPPRIS ALT2 BASIC6.58□□□□□ -1.36
CCDC42Q96M95 AC015799.1-201ENST00000622996 3122 ntBASIC6.58□□□□□ -1.36
CCDC42Q96M95 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
CCDC42Q96M95 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
CCDC42Q96M95 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
CCDC42Q96M95 HOPX-204ENST00000381260 1141 ntTSL 3 BASIC6.58□□□□□ -1.36
CCDC42Q96M95 RNU6-316P-201ENST00000391027 107 ntBASIC6.58□□□□□ -1.36
CCDC42Q96M95 PTCD2P2-201ENST00000415579 1095 ntBASIC6.58□□□□□ -1.36
CCDC42Q96M95 AC002127.1-201ENST00000421305 225 ntBASIC6.58□□□□□ -1.36
CCDC42Q96M95 ELOBP4-201ENST00000423418 296 ntBASIC6.58□□□□□ -1.36
CCDC42Q96M95 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC6.58□□□□□ -1.36
CCDC42Q96M95 USP24P1-201ENST00000433802 779 ntBASIC6.58□□□□□ -1.36
CCDC42Q96M95 SLAMF6P1-201ENST00000451067 602 ntBASIC6.58□□□□□ -1.36
CCDC42Q96M95 AC011625.1-201ENST00000455442 526 ntTSL 4 BASIC6.58□□□□□ -1.36
CCDC42Q96M95 RN7SL83P-201ENST00000468131 297 ntBASIC6.58□□□□□ -1.36
CCDC42Q96M95 TRBV5-2-201ENST00000489095 273 ntBASIC6.58□□□□□ -1.36
CCDC42Q96M95 GM2AP2-201ENST00000491764 562 ntBASIC6.58□□□□□ -1.36
CCDC42Q96M95 LINC01386-201ENST00000506196 440 ntTSL 3 BASIC6.58□□□□□ -1.36
CCDC42Q96M95 MRPL57P6-201ENST00000506570 309 ntBASIC6.58□□□□□ -1.36
CCDC42Q96M95 OR4D12P-201ENST00000509361 911 ntBASIC6.58□□□□□ -1.36
CCDC42Q96M95 Y_RNA.710-201ENST00000516975 110 ntBASIC6.58□□□□□ -1.36
CCDC42Q96M95 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
CCDC42Q96M95 MIR9-3HG-211ENST00000561037 779 ntTSL 5 BASIC6.58□□□□□ -1.36
CCDC42Q96M95 AC233699.1-201ENST00000569955 1168 ntBASIC6.58□□□□□ -1.36
CCDC42Q96M95 AC006262.3-201ENST00000597337 258 ntTSL 3 BASIC6.58□□□□□ -1.36
CCDC42Q96M95 AC141002.1-201ENST00000607025 279 ntBASIC6.58□□□□□ -1.36
CCDC42Q96M95 LINC01320-206ENST00000607437 528 ntTSL 5 BASIC6.58□□□□□ -1.36
CCDC42Q96M95 AC093388.1-201ENST00000609166 430 ntBASIC6.58□□□□□ -1.36
CCDC42Q96M95 AL008582.1-201ENST00000609612 442 ntBASIC6.58□□□□□ -1.36
CCDC42Q96M95 BMS1P14-201ENST00000615056 606 ntTSL 5 BASIC6.58□□□□□ -1.36
CCDC42Q96M95 CCL15-204ENST00000617897 1073 ntAPPRIS P2 TSL 1 (best) BASIC6.58□□□□□ -1.36
CCDC42Q96M95 AC018628.1-201ENST00000624147 3819 ntBASIC6.58□□□□□ -1.36
CCDC42Q96M95 PAK3-202ENST00000360648 2241 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
CCDC42Q96M95 AC016583.1-201ENST00000624221 2431 ntBASIC6.58□□□□□ -1.36
CCDC42Q96M95 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC6.58□□□□□ -1.36
CCDC42Q96M95 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
CCDC42Q96M95 AC024651.2-201ENST00000562480 2098 ntBASIC6.57□□□□□ -1.36
CCDC42Q96M95 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC42Q96M95 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC6.57□□□□□ -1.36
CCDC42Q96M95 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC42Q96M95 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC42Q96M95 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC6.57□□□□□ -1.36
CCDC42Q96M95 DNAJA1P3-201ENST00000399417 1194 ntBASIC6.57□□□□□ -1.36
CCDC42Q96M95 DHFRP2-201ENST00000414224 547 ntBASIC6.57□□□□□ -1.36
CCDC42Q96M95 GPN3P1-201ENST00000423883 535 ntBASIC6.57□□□□□ -1.36
CCDC42Q96M95 PRH1-201ENST00000428168 603 ntAPPRIS ALT2 TSL 5 BASIC6.57□□□□□ -1.36
CCDC42Q96M95 AC112492.2-201ENST00000432774 1030 ntBASIC6.57□□□□□ -1.36
CCDC42Q96M95 FBXW12-203ENST00000436231 1117 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC42Q96M95 AL731544.1-201ENST00000436500 370 ntTSL 5 BASIC6.57□□□□□ -1.36
CCDC42Q96M95 AL590399.4-201ENST00000436561 601 ntBASIC6.57□□□□□ -1.36
CCDC42Q96M95 NPM1P23-201ENST00000440193 849 ntBASIC6.57□□□□□ -1.36
CCDC42Q96M95 KRTAP2-5P-201ENST00000446109 396 ntBASIC6.57□□□□□ -1.36
CCDC42Q96M95 MAGI2-AS3-210ENST00000448636 798 ntTSL 5 BASIC6.57□□□□□ -1.36
CCDC42Q96M95 RPL23AP40-201ENST00000487630 390 ntBASIC6.57□□□□□ -1.36
CCDC42Q96M95 AC139713.1-202ENST00000512366 460 ntBASIC6.57□□□□□ -1.36
CCDC42Q96M95 LINC01618-201ENST00000514957 727 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC42Q96M95 RNA5SP75-201ENST00000516841 111 ntBASIC6.57□□□□□ -1.36
CCDC42Q96M95 IGKV2-19-201ENST00000518132 283 ntBASIC6.57□□□□□ -1.36
CCDC42Q96M95 AC025871.2-201ENST00000522589 511 ntTSL 3 BASIC6.57□□□□□ -1.36
CCDC42Q96M95 AC016573.1-201ENST00000523205 539 ntTSL 3 BASIC6.57□□□□□ -1.36
CCDC42Q96M95 AC084851.2-201ENST00000530377 364 ntBASIC6.57□□□□□ -1.36
CCDC42Q96M95 AC079600.3-201ENST00000547898 447 ntTSL 5 BASIC6.57□□□□□ -1.36
CCDC42Q96M95 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC6.57□□□□□ -1.36
CCDC42Q96M95 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC6.57□□□□□ -1.36
CCDC42Q96M95 NIFKP4-201ENST00000567275 1192 ntBASIC6.57□□□□□ -1.36
CCDC42Q96M95 AC068408.1-201ENST00000577406 1144 ntBASIC6.57□□□□□ -1.36
CCDC42Q96M95 AC026898.1-201ENST00000586404 571 ntBASIC6.57□□□□□ -1.36
CCDC42Q96M95 AC008555.7-201ENST00000605008 583 ntBASIC6.57□□□□□ -1.36
CCDC42Q96M95 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC6.57□□□□□ -1.36
CCDC42Q96M95 AL591167.1-201ENST00000607321 456 ntBASIC6.57□□□□□ -1.36
CCDC42Q96M95 AL136097.3-201ENST00000611097 505 ntBASIC6.57□□□□□ -1.36
CCDC42Q96M95 AL031658.2-201ENST00000616850 651 ntBASIC6.57□□□□□ -1.36
CCDC42Q96M95 AC027506.1-201ENST00000621395 198 ntBASIC6.57□□□□□ -1.36
CCDC42Q96M95 LINC01676-209ENST00000623043 896 ntTSL 4 BASIC6.57□□□□□ -1.36
CCDC42Q96M95 LINC00293-204ENST00000521715 1498 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC42Q96M95 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC6.57□□□□□ -1.36
CCDC42Q96M95 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC6.57□□□□□ -1.36
CCDC42Q96M95 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC42Q96M95 AL133243.2-201ENST00000610331 1621 ntBASIC6.57□□□□□ -1.36
CCDC42Q96M95 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
CCDC42Q96M95 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC6.57□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms