Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 IGHV1-14-201ENST00000523391 241 ntBASIC5.6□□□□□ -1.51
SKA3Q8IX90 AC135983.3-201ENST00000528049 1226 ntBASIC5.6□□□□□ -1.51
SKA3Q8IX90 ST3GAL3-232ENST00000531451 420 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SKA3Q8IX90 AC124891.1-201ENST00000536322 519 ntBASIC5.6□□□□□ -1.51
SKA3Q8IX90 AC008055.1-201ENST00000547032 609 ntBASIC5.6□□□□□ -1.51
SKA3Q8IX90 AC080011.1-201ENST00000552378 989 ntTSL 3 BASIC5.6□□□□□ -1.51
SKA3Q8IX90 DPPA3P2-202ENST00000557188 1219 ntBASIC5.6□□□□□ -1.51
SKA3Q8IX90 ARGFXP2-201ENST00000579304 949 ntBASIC5.6□□□□□ -1.51
SKA3Q8IX90 AC006305.2-201ENST00000589617 552 ntTSL 4 BASIC5.6□□□□□ -1.51
SKA3Q8IX90 AC012368.3-201ENST00000604190 219 ntBASIC5.6□□□□□ -1.51
SKA3Q8IX90 AL008723.3-201ENST00000608926 449 ntBASIC5.6□□□□□ -1.51
SKA3Q8IX90 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC5.6□□□□□ -1.51
SKA3Q8IX90 AC004656.1-201ENST00000568479 4951 ntBASIC5.6□□□□□ -1.51
SKA3Q8IX90 DAOA-AS1-201ENST00000448407 2482 ntTSL 2 BASIC5.6□□□□□ -1.51
SKA3Q8IX90 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
SKA3Q8IX90 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SKA3Q8IX90 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SKA3Q8IX90 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SKA3Q8IX90 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SKA3Q8IX90 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
SKA3Q8IX90 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
SKA3Q8IX90 KAT7-203ENST00000435742 3638 ntTSL 2 BASIC5.6□□□□□ -1.51
SKA3Q8IX90 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
SKA3Q8IX90 CXCL8-201ENST00000307407 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.6□□□□□ -1.51
SKA3Q8IX90 AL049634.1-201ENST00000453770 1720 ntBASIC5.6□□□□□ -1.51
SKA3Q8IX90 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.51
SKA3Q8IX90 ZNF329-201ENST00000358067 3290 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.51
SKA3Q8IX90 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
SKA3Q8IX90 AC015799.1-201ENST00000622996 3122 ntBASIC5.59□□□□□ -1.51
SKA3Q8IX90 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
SKA3Q8IX90 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC5.59□□□□□ -1.51
SKA3Q8IX90 AC010894.3-202ENST00000412835 1405 ntTSL 2 BASIC5.59□□□□□ -1.51
SKA3Q8IX90 OR1Q1-201ENST00000297913 945 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
SKA3Q8IX90 TRAV13-1-201ENST00000390436 360 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
SKA3Q8IX90 CCL20-202ENST00000409189 839 ntAPPRIS ALT1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SKA3Q8IX90 RN7SKP38-201ENST00000410782 309 ntBASIC5.59□□□□□ -1.51
SKA3Q8IX90 NUTM2A-AS1-203ENST00000413961 501 ntTSL 3 BASIC5.59□□□□□ -1.51
SKA3Q8IX90 AL034397.2-201ENST00000424241 857 ntTSL 2 BASIC5.59□□□□□ -1.51
SKA3Q8IX90 AL031846.1-202ENST00000424436 592 ntTSL 2 BASIC5.59□□□□□ -1.51
SKA3Q8IX90 HNRNPA1P18-201ENST00000433537 927 ntBASIC5.59□□□□□ -1.51
SKA3Q8IX90 MIR205HG-206ENST00000440276 539 ntTSL 5 BASIC5.59□□□□□ -1.51
SKA3Q8IX90 LINC02384-202ENST00000441255 567 ntTSL 4 BASIC5.59□□□□□ -1.51
SKA3Q8IX90 AL158835.1-204ENST00000449693 371 ntTSL 3 BASIC5.59□□□□□ -1.51
SKA3Q8IX90 LINC01072-201ENST00000455848 431 ntTSL 3 BASIC5.59□□□□□ -1.51
SKA3Q8IX90 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC5.59□□□□□ -1.51
SKA3Q8IX90 RARRES2P3-201ENST00000457739 473 ntBASIC5.59□□□□□ -1.51
SKA3Q8IX90 SNX18P26-201ENST00000458433 740 ntBASIC5.59□□□□□ -1.51
SKA3Q8IX90 RPS7P10-201ENST00000464254 603 ntBASIC5.59□□□□□ -1.51
SKA3Q8IX90 GM2AP2-201ENST00000491764 562 ntBASIC5.59□□□□□ -1.51
SKA3Q8IX90 WDFY3-AS1-201ENST00000510449 493 ntTSL 3 BASIC5.59□□□□□ -1.51
SKA3Q8IX90 AC026782.2-201ENST00000510845 636 ntBASIC5.59□□□□□ -1.51
SKA3Q8IX90 C5orf46-203ENST00000515291 573 ntAPPRIS ALT1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SKA3Q8IX90 COX6B1P4-201ENST00000519826 484 ntBASIC5.59□□□□□ -1.51
SKA3Q8IX90 OR5D2P-201ENST00000524390 911 ntBASIC5.59□□□□□ -1.51
SKA3Q8IX90 DEFB134-202ENST00000526438 1068 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SKA3Q8IX90 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC5.59□□□□□ -1.51
SKA3Q8IX90 LINC02454-201ENST00000539116 589 ntTSL 4 BASIC5.59□□□□□ -1.51
SKA3Q8IX90 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SKA3Q8IX90 LINC00944-204ENST00000544499 366 ntTSL 5 BASIC5.59□□□□□ -1.51
SKA3Q8IX90 AC090709.1-201ENST00000548384 716 ntTSL 3 BASIC5.59□□□□□ -1.51
SKA3Q8IX90 AC079793.1-201ENST00000553076 713 ntTSL 4 BASIC5.59□□□□□ -1.51
SKA3Q8IX90 AL357153.3-201ENST00000553982 611 ntTSL 3 BASIC5.59□□□□□ -1.51
SKA3Q8IX90 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC5.59□□□□□ -1.51
SKA3Q8IX90 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC5.59□□□□□ -1.51
SKA3Q8IX90 AC025809.1-201ENST00000585336 560 ntTSL 4 BASIC5.59□□□□□ -1.51
SKA3Q8IX90 BPIFA4P-204ENST00000605211 656 ntTSL 2 BASIC5.59□□□□□ -1.51
SKA3Q8IX90 AC015819.1-201ENST00000613588 663 ntBASIC5.59□□□□□ -1.51
SKA3Q8IX90 TCL6_3.1-201ENST00000619064 137 ntBASIC5.59□□□□□ -1.51
SKA3Q8IX90 ZNHIT3-208ENST00000619730 926 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
SKA3Q8IX90 MIR6823-201ENST00000622118 61 ntBASIC5.59□□□□□ -1.51
SKA3Q8IX90 SCRN1-210ENST00000631335 423 ntTSL 5 BASIC5.59□□□□□ -1.51
SKA3Q8IX90 LINC02341-201ENST00000637043 824 ntTSL 3 BASIC5.59□□□□□ -1.51
SKA3Q8IX90 SMCO1-201ENST00000397537 1812 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SKA3Q8IX90 AL359976.1-201ENST00000418655 3528 ntBASIC5.59□□□□□ -1.51
SKA3Q8IX90 IGIP-201ENST00000333305 3458 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
SKA3Q8IX90 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC5.59□□□□□ -1.52
SKA3Q8IX90 EIF5AL1-201ENST00000520547 3840 ntAPPRIS P1 BASIC5.59□□□□□ -1.52
SKA3Q8IX90 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SKA3Q8IX90 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SKA3Q8IX90 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
SKA3Q8IX90 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
SKA3Q8IX90 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC5.58□□□□□ -1.52
SKA3Q8IX90 SPATA6-202ENST00000371843 2297 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SKA3Q8IX90 AC124312.1-201ENST00000551312 1325 ntAPPRIS P5 TSL 5 BASIC5.58□□□□□ -1.52
SKA3Q8IX90 SERPINB7-206ENST00000540675 2193 ntTSL 2 BASIC5.58□□□□□ -1.52
SKA3Q8IX90 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC5.58□□□□□ -1.52
SKA3Q8IX90 STX19-201ENST00000315099 1158 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SKA3Q8IX90 PIH1D3-201ENST00000336387 993 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
SKA3Q8IX90 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SKA3Q8IX90 SDHAF3-201ENST00000360382 731 ntTSL 2 BASIC5.58□□□□□ -1.52
SKA3Q8IX90 RNA5SP478-201ENST00000364657 115 ntBASIC5.58□□□□□ -1.52
SKA3Q8IX90 MIR191-201ENST00000384873 92 ntBASIC5.58□□□□□ -1.52
SKA3Q8IX90 GNAT3-201ENST00000398291 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SKA3Q8IX90 RPS26P38-201ENST00000414476 348 ntBASIC5.58□□□□□ -1.52
SKA3Q8IX90 AC004012.1-201ENST00000416593 534 ntTSL 4 BASIC5.58□□□□□ -1.52
SKA3Q8IX90 AC106900.1-201ENST00000418620 456 ntTSL 5 BASIC5.58□□□□□ -1.52
SKA3Q8IX90 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC5.58□□□□□ -1.52
SKA3Q8IX90 QKI-206ENST00000424802 954 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SKA3Q8IX90 AL512363.1-201ENST00000425089 586 ntTSL 2 BASIC5.58□□□□□ -1.52
SKA3Q8IX90 AL606534.4-201ENST00000427176 792 ntTSL 5 BASIC5.58□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms