Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AP001636.2-201ENST00000525517 696 ntBASIC7.39□□□□□ -1.23
COL6A1P12109 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC7.39□□□□□ -1.23
COL6A1P12109 AC027216.1-201ENST00000577726 685 ntBASIC7.39□□□□□ -1.23
COL6A1P12109 AC008507.3-201ENST00000585753 472 ntBASIC7.39□□□□□ -1.23
COL6A1P12109 RPSAP75-201ENST00000605848 301 ntBASIC7.39□□□□□ -1.23
COL6A1P12109 CR589904.2-201ENST00000612533 440 ntBASIC7.39□□□□□ -1.23
COL6A1P12109 MIR6811-201ENST00000620409 58 ntBASIC7.39□□□□□ -1.23
COL6A1P12109 OFCC1-218ENST00000622909 754 ntAPPRIS ALT2 TSL 5 BASIC7.39□□□□□ -1.23
COL6A1P12109 AC129915.3-201ENST00000634128 948 ntBASIC7.39□□□□□ -1.23
COL6A1P12109 AC068620.4-201ENST00000636730 1182 ntBASIC7.39□□□□□ -1.23
COL6A1P12109 CD300E-201ENST00000392619 3501 ntAPPRIS P2 TSL 1 (best) BASIC7.39□□□□□ -1.23
COL6A1P12109 MAPK10-270ENST00000641102 3538 ntBASIC7.39□□□□□ -1.23
COL6A1P12109 AP000866.1-202ENST00000529392 2792 ntTSL 2 BASIC7.39□□□□□ -1.23
COL6A1P12109 PEX13-201ENST00000295030 4470 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
COL6A1P12109 VIRMA-202ENST00000421249 3924 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
COL6A1P12109 PPP2R3A-201ENST00000264977 6795 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
COL6A1P12109 FANCD2-201ENST00000287647 5219 ntAPPRIS P3 TSL 1 (best) BASIC7.39□□□□□ -1.23
COL6A1P12109 MEIS1-209ENST00000488550 5111 ntAPPRIS ALT1 TSL 1 (best) BASIC7.39□□□□□ -1.23
COL6A1P12109 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
COL6A1P12109 MAMDC2-AS1-202ENST00000414515 2097 ntTSL 5 BASIC7.39□□□□□ -1.23
COL6A1P12109 CARF-202ENST00000402905 5938 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
COL6A1P12109 ATM-201ENST00000278616 13147 ntAPPRIS P1 TSL 5 BASIC7.38□□□□□ -1.23
COL6A1P12109 CLUL1-201ENST00000338387 1897 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
COL6A1P12109 ZNF81-204ENST00000376954 7933 ntAPPRIS P1 TSL 5 BASIC7.38□□□□□ -1.23
COL6A1P12109 POLA1-201ENST00000379059 5440 ntAPPRIS P3 TSL 1 (best) BASIC7.38□□□□□ -1.23
COL6A1P12109 POLA1-206ENST00000611764 5434 ntAPPRIS ALT2 TSL 5 BASIC7.38□□□□□ -1.23
COL6A1P12109 AP002001.1-202ENST00000525797 1754 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
COL6A1P12109 AC093909.5-201ENST00000621839 1799 ntBASIC7.38□□□□□ -1.23
COL6A1P12109 DLG2-230ENST00000532653 2891 ntAPPRIS ALT2 TSL 1 (best) BASIC7.38□□□□□ -1.23
COL6A1P12109 AL353763.1-201ENST00000624467 1628 ntBASIC7.38□□□□□ -1.23
COL6A1P12109 IPO5-222ENST00000490680 3419 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
COL6A1P12109 NAPEPLD-209ENST00000465647 2380 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
COL6A1P12109 GCNT3-209ENST00000560585 2360 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
COL6A1P12109 ZNF300-204ENST00000427179 4155 ntTSL 2 BASIC7.38□□□□□ -1.23
COL6A1P12109 OR4Q3-202ENST00000642117 2165 ntAPPRIS P1 BASIC7.38□□□□□ -1.23
COL6A1P12109 NBPF12-203ENST00000611443 5594 ntTSL 5 BASIC7.38□□□□□ -1.23
COL6A1P12109 OR2B6-201ENST00000244623 942 ntAPPRIS P1 BASIC7.38□□□□□ -1.23
COL6A1P12109 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC7.38□□□□□ -1.23
COL6A1P12109 OR4F17-201ENST00000318050 1054 ntAPPRIS P1 BASIC7.38□□□□□ -1.23
COL6A1P12109 SNORA38B-201ENST00000363524 131 ntBASIC7.38□□□□□ -1.23
COL6A1P12109 C1orf194-204ENST00000369949 731 ntTSL 2 BASIC7.38□□□□□ -1.23
COL6A1P12109 MTND4P13-201ENST00000402078 1023 ntBASIC7.38□□□□□ -1.23
COL6A1P12109 AL929472.1-201ENST00000417484 429 ntBASIC7.38□□□□□ -1.23
COL6A1P12109 PVALB-204ENST00000417718 569 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
COL6A1P12109 KIF4CP-201ENST00000422742 1279 ntBASIC7.38□□□□□ -1.23
COL6A1P12109 MTCO2P1-201ENST00000424648 477 ntBASIC7.38□□□□□ -1.23
COL6A1P12109 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC7.38□□□□□ -1.23
COL6A1P12109 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC7.38□□□□□ -1.23
COL6A1P12109 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC7.38□□□□□ -1.23
COL6A1P12109 AP003774.2-202ENST00000449694 341 ntTSL 3 BASIC7.38□□□□□ -1.23
COL6A1P12109 OR52Y1P-201ENST00000452418 828 ntBASIC7.38□□□□□ -1.23
COL6A1P12109 AC069277.2-201ENST00000454211 432 ntBASIC7.38□□□□□ -1.23
COL6A1P12109 LINC02025-201ENST00000488348 360 ntTSL 3 BASIC7.38□□□□□ -1.23
COL6A1P12109 SUMO2P4-201ENST00000504193 276 ntBASIC7.38□□□□□ -1.23
COL6A1P12109 AC025458.1-201ENST00000506046 166 ntBASIC7.38□□□□□ -1.23
COL6A1P12109 AL158068.1-201ENST00000506116 616 ntBASIC7.38□□□□□ -1.23
COL6A1P12109 AC096571.1-202ENST00000506634 735 ntBASIC7.38□□□□□ -1.23
COL6A1P12109 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC7.38□□□□□ -1.23
COL6A1P12109 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC7.38□□□□□ -1.23
COL6A1P12109 AC021146.10-201ENST00000515628 706 ntBASIC7.38□□□□□ -1.23
COL6A1P12109 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC7.38□□□□□ -1.23
COL6A1P12109 IGHVIII-67-4-201ENST00000524281 296 ntBASIC7.38□□□□□ -1.23
COL6A1P12109 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC7.38□□□□□ -1.23
COL6A1P12109 AC139103.1-201ENST00000534696 1030 ntBASIC7.38□□□□□ -1.23
COL6A1P12109 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC7.38□□□□□ -1.23
COL6A1P12109 AC008055.1-201ENST00000547032 609 ntBASIC7.38□□□□□ -1.23
COL6A1P12109 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC7.38□□□□□ -1.23
COL6A1P12109 MTND3P12-201ENST00000559068 328 ntBASIC7.38□□□□□ -1.23
COL6A1P12109 ULK4P1-202ENST00000565174 503 ntBASIC7.38□□□□□ -1.23
COL6A1P12109 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC7.38□□□□□ -1.23
COL6A1P12109 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC7.38□□□□□ -1.23
COL6A1P12109 AC092944.2-201ENST00000605443 889 ntBASIC7.38□□□□□ -1.23
COL6A1P12109 AL356118.1-201ENST00000635272 1078 ntBASIC7.38□□□□□ -1.23
COL6A1P12109 CDH19-203ENST00000540086 1963 ntTSL 2 BASIC7.38□□□□□ -1.23
COL6A1P12109 MUM1L1-201ENST00000337685 4308 ntAPPRIS P1 TSL 3 BASIC7.38□□□□□ -1.23
COL6A1P12109 AC122713.2-201ENST00000624942 3335 ntBASIC7.38□□□□□ -1.23
COL6A1P12109 AL157831.2-201ENST00000564681 3095 ntBASIC7.38□□□□□ -1.23
COL6A1P12109 AC093752.1-213ENST00000503038 2376 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
COL6A1P12109 LINC02179-201ENST00000561523 3673 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
COL6A1P12109 ZNF585B-204ENST00000531805 2971 ntTSL 2 BASIC7.38□□□□□ -1.23
COL6A1P12109 RBM25-201ENST00000261973 6910 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
COL6A1P12109 APOL3-203ENST00000397287 3626 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
COL6A1P12109 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC7.37□□□□□ -1.23
COL6A1P12109 IFT74-204ENST00000443698 2163 ntAPPRIS P1 TSL 5 BASIC7.37□□□□□ -1.23
COL6A1P12109 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC7.37□□□□□ -1.23
COL6A1P12109 NFAT5-201ENST00000349945 13362 ntAPPRIS ALT1 TSL 1 (best) BASIC7.37□□□□□ -1.23
COL6A1P12109 AL391262.1-201ENST00000556558 1992 ntBASIC7.37□□□□□ -1.23
COL6A1P12109 EZH1-222ENST00000592743 2501 ntAPPRIS P1 TSL 2 BASIC7.37□□□□□ -1.23
COL6A1P12109 UTY-216ENST00000624098 3636 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
COL6A1P12109 MAPKAPK5P1-201ENST00000431810 1376 ntBASIC7.37□□□□□ -1.23
COL6A1P12109 TMBIM6-209ENST00000547798 2494 ntAPPRIS ALT2 TSL 2 BASIC7.37□□□□□ -1.23
COL6A1P12109 PDE6A-205ENST00000617647 4039 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
COL6A1P12109 C4orf26-201ENST00000311623 1874 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
COL6A1P12109 GFPT1-202ENST00000361060 8632 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
COL6A1P12109 ADTRP-201ENST00000229583 891 ntTSL 2 BASIC7.37□□□□□ -1.23
COL6A1P12109 SNORA63.3-201ENST00000362682 132 ntBASIC7.37□□□□□ -1.23
COL6A1P12109 RN7SKP74-201ENST00000362849 309 ntBASIC7.37□□□□□ -1.23
COL6A1P12109 RNA5SP510-201ENST00000364697 99 ntBASIC7.37□□□□□ -1.23
COL6A1P12109 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
COL6A1P12109 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC7.37□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 78.7 ms