Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 MTND2P8-201ENST00000450555 1025 ntBASIC6.83□□□□□ -1.32
USP39Q53GS9 CLIC4P1-201ENST00000453177 535 ntBASIC6.83□□□□□ -1.32
USP39Q53GS9 AC108751.3-201ENST00000461814 1020 ntBASIC6.83□□□□□ -1.32
USP39Q53GS9 GAPVD1-215ENST00000470056 8923 ntTSL 5 BASIC6.83□□□□□ -1.32
USP39Q53GS9 RPS14P8-201ENST00000478778 369 ntBASIC6.83□□□□□ -1.32
USP39Q53GS9 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
USP39Q53GS9 PTTG2-201ENST00000504686 691 ntAPPRIS P1 BASIC6.83□□□□□ -1.32
USP39Q53GS9 AC095057.1-201ENST00000507583 168 ntBASIC6.83□□□□□ -1.32
USP39Q53GS9 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC6.83□□□□□ -1.32
USP39Q53GS9 AC103718.1-201ENST00000522667 683 ntTSL 3 BASIC6.83□□□□□ -1.32
USP39Q53GS9 EEF1A1P37-201ENST00000522748 715 ntBASIC6.83□□□□□ -1.32
USP39Q53GS9 AC134349.2-201ENST00000535136 910 ntBASIC6.83□□□□□ -1.32
USP39Q53GS9 AC022075.2-201ENST00000535911 562 ntTSL 4 BASIC6.83□□□□□ -1.32
USP39Q53GS9 VEPH1-219ENST00000537559 992 ntTSL 5 BASIC6.83□□□□□ -1.32
USP39Q53GS9 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC6.83□□□□□ -1.32
USP39Q53GS9 RN7SL199P-201ENST00000578752 281 ntBASIC6.83□□□□□ -1.32
USP39Q53GS9 RN7SL656P-201ENST00000579044 281 ntBASIC6.83□□□□□ -1.32
USP39Q53GS9 RN7SL270P-201ENST00000579643 281 ntBASIC6.83□□□□□ -1.32
USP39Q53GS9 Metazoa_SRP.202-201ENST00000585071 281 ntBASIC6.83□□□□□ -1.32
USP39Q53GS9 AC020915.3-201ENST00000595301 550 ntTSL 5 BASIC6.83□□□□□ -1.32
USP39Q53GS9 AC073539.3-201ENST00000601905 386 ntTSL 3 BASIC6.83□□□□□ -1.32
USP39Q53GS9 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC6.83□□□□□ -1.32
USP39Q53GS9 FAM72A-208ENST00000607379 1139 ntBASIC6.83□□□□□ -1.32
USP39Q53GS9 AC241377.2-201ENST00000612313 553 ntTSL 4 BASIC6.83□□□□□ -1.32
USP39Q53GS9 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC6.83□□□□□ -1.32
USP39Q53GS9 AC061999.1-201ENST00000624454 177 ntBASIC6.83□□□□□ -1.32
USP39Q53GS9 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC6.83□□□□□ -1.32
USP39Q53GS9 C11orf72-201ENST00000333139 2431 ntTSL 2 BASIC6.83□□□□□ -1.32
USP39Q53GS9 AC122713.2-201ENST00000624942 3335 ntBASIC6.83□□□□□ -1.32
USP39Q53GS9 LEO1-201ENST00000299601 2193 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
USP39Q53GS9 OR2G6-202ENST00000641501 5840 ntAPPRIS P1 BASIC6.83□□□□□ -1.32
USP39Q53GS9 OVAAL-201ENST00000442621 1489 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
USP39Q53GS9 ZNF519-207ENST00000590202 2830 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
USP39Q53GS9 LRP2BP-202ENST00000505916 2302 ntAPPRIS P1 TSL 2 BASIC6.83□□□□□ -1.32
USP39Q53GS9 MME-203ENST00000460393 5622 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
USP39Q53GS9 TDP1-213ENST00000555880 1894 ntTSL 5 BASIC6.83□□□□□ -1.32
USP39Q53GS9 MAPK10-383ENST00000642032 3390 ntBASIC6.83□□□□□ -1.32
USP39Q53GS9 LINC02547-201ENST00000531559 3308 ntTSL 2 BASIC6.83□□□□□ -1.32
USP39Q53GS9 FAM160A1-203ENST00000505231 4156 ntAPPRIS P1 TSL 5 BASIC6.83□□□□□ -1.32
USP39Q53GS9 KIAA0040-206ENST00000619513 4340 ntTSL 2 BASIC6.82□□□□□ -1.32
USP39Q53GS9 SP110-201ENST00000258381 2426 ntAPPRIS P4 TSL 2 BASIC6.82□□□□□ -1.32
USP39Q53GS9 ESF1-201ENST00000202816 3216 ntAPPRIS P1 TSL 5 BASIC6.82□□□□□ -1.32
USP39Q53GS9 CYP2C8-212ENST00000623108 1962 ntTSL 2 BASIC6.82□□□□□ -1.32
USP39Q53GS9 SMG1P5-202ENST00000529428 4219 ntBASIC6.82□□□□□ -1.32
USP39Q53GS9 SMG1P2-201ENST00000566127 4221 ntBASIC6.82□□□□□ -1.32
USP39Q53GS9 MTHFD1P1-201ENST00000413059 2764 ntBASIC6.82□□□□□ -1.32
USP39Q53GS9 NBPF11-202ENST00000614015 4630 ntAPPRIS P2 TSL 2 BASIC6.82□□□□□ -1.32
USP39Q53GS9 CCR6-202ENST00000349984 2980 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
USP39Q53GS9 FAM197Y2-202ENST00000448006 2338 ntTSL 2 BASIC6.82□□□□□ -1.32
USP39Q53GS9 TCL6-203ENST00000459662 3307 ntTSL 2 BASIC6.82□□□□□ -1.32
USP39Q53GS9 FBXO43-201ENST00000428847 2886 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
USP39Q53GS9 OR5T2-202ENST00000641661 2062 ntAPPRIS ALT2 BASIC6.82□□□□□ -1.32
USP39Q53GS9 NOX4-211ENST00000528341 1899 ntTSL 2 BASIC6.82□□□□□ -1.32
USP39Q53GS9 OR7A2P-201ENST00000304105 930 ntBASIC6.82□□□□□ -1.32
USP39Q53GS9 FAM183A-201ENST00000335282 488 ntAPPRIS P1 TSL 2 BASIC6.82□□□□□ -1.32
USP39Q53GS9 RNA5SP321-201ENST00000362722 111 ntBASIC6.82□□□□□ -1.32
USP39Q53GS9 TINAG-203ENST00000370869 782 ntTSL 3 BASIC6.82□□□□□ -1.32
USP39Q53GS9 NOX1-203ENST00000372964 661 ntTSL 2 BASIC6.82□□□□□ -1.32
USP39Q53GS9 MIR640-201ENST00000385086 96 ntBASIC6.82□□□□□ -1.32
USP39Q53GS9 CFAP70-204ENST00000394865 1222 ntTSL 5 BASIC6.82□□□□□ -1.32
USP39Q53GS9 MTIF3-203ENST00000405591 889 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
USP39Q53GS9 STAT4-203ENST00000409995 709 ntTSL 5 BASIC6.82□□□□□ -1.32
USP39Q53GS9 AC009229.2-201ENST00000417213 351 ntTSL 3 BASIC6.82□□□□□ -1.32
USP39Q53GS9 AC106883.1-201ENST00000418805 562 ntBASIC6.82□□□□□ -1.32
USP39Q53GS9 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC6.82□□□□□ -1.32
USP39Q53GS9 AL358394.1-201ENST00000422807 535 ntTSL 2 BASIC6.82□□□□□ -1.32
USP39Q53GS9 AL590623.1-201ENST00000427864 105 ntBASIC6.82□□□□□ -1.32
USP39Q53GS9 BX119904.3-201ENST00000428194 957 ntBASIC6.82□□□□□ -1.32
USP39Q53GS9 AC009227.2-201ENST00000432599 511 ntTSL 3 BASIC6.82□□□□□ -1.32
USP39Q53GS9 AC092106.2-201ENST00000436597 487 ntBASIC6.82□□□□□ -1.32
USP39Q53GS9 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC6.82□□□□□ -1.32
USP39Q53GS9 COL11A2P1-205ENST00000441798 676 ntBASIC6.82□□□□□ -1.32
USP39Q53GS9 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC6.82□□□□□ -1.32
USP39Q53GS9 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC6.82□□□□□ -1.32
USP39Q53GS9 RN7SL362P-201ENST00000494228 267 ntBASIC6.82□□□□□ -1.32
USP39Q53GS9 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC6.82□□□□□ -1.32
USP39Q53GS9 AC091849.1-201ENST00000509920 121 ntBASIC6.82□□□□□ -1.32
USP39Q53GS9 MTND1P22-201ENST00000510572 951 ntBASIC6.82□□□□□ -1.32
USP39Q53GS9 AC018797.1-201ENST00000510791 255 ntBASIC6.82□□□□□ -1.32
USP39Q53GS9 SUMO2P7-201ENST00000511179 285 ntBASIC6.82□□□□□ -1.32
USP39Q53GS9 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC6.82□□□□□ -1.32
USP39Q53GS9 AC106800.2-201ENST00000514009 1103 ntBASIC6.82□□□□□ -1.32
USP39Q53GS9 MORF4L1P3-201ENST00000525966 950 ntBASIC6.82□□□□□ -1.32
USP39Q53GS9 AP002498.1-201ENST00000530190 568 ntTSL 3 BASIC6.82□□□□□ -1.32
USP39Q53GS9 AC127526.3-201ENST00000534291 450 ntTSL 3 BASIC6.82□□□□□ -1.32
USP39Q53GS9 AC068339.2-201ENST00000534395 618 ntBASIC6.82□□□□□ -1.32
USP39Q53GS9 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC6.82□□□□□ -1.32
USP39Q53GS9 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
USP39Q53GS9 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC6.82□□□□□ -1.32
USP39Q53GS9 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC6.82□□□□□ -1.32
USP39Q53GS9 AL845552.1-201ENST00000556820 323 ntBASIC6.82□□□□□ -1.32
USP39Q53GS9 DPPA3P2-202ENST00000557188 1219 ntBASIC6.82□□□□□ -1.32
USP39Q53GS9 AC013652.2-202ENST00000558948 910 ntTSL 3 BASIC6.82□□□□□ -1.32
USP39Q53GS9 AC093524.1-201ENST00000564266 1094 ntBASIC6.82□□□□□ -1.32
USP39Q53GS9 ANP32BP1-202ENST00000568553 737 ntBASIC6.82□□□□□ -1.32
USP39Q53GS9 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
USP39Q53GS9 AP005230.1-204ENST00000579097 779 ntTSL 2 BASIC6.82□□□□□ -1.32
USP39Q53GS9 AP000919.1-201ENST00000582850 985 ntBASIC6.82□□□□□ -1.32
USP39Q53GS9 ZNF790-AS1-201ENST00000587278 653 ntTSL 5 BASIC6.82□□□□□ -1.32
USP39Q53GS9 AC110760.3-201ENST00000598794 467 ntBASIC6.82□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 96.5 ms