Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL28A1Q2UY09 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC6.33□□□□□ -1.4
COL28A1Q2UY09 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL28A1Q2UY09 ATP13A5-201ENST00000342358 4027 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL28A1Q2UY09 ZNF790-206ENST00000613249 2183 ntAPPRIS P1 TSL 4 BASIC6.33□□□□□ -1.4
COL28A1Q2UY09 PROM1-219ENST00000539194 3884 ntAPPRIS ALT2 TSL 5 BASIC6.33□□□□□ -1.4
COL28A1Q2UY09 SP110-201ENST00000258381 2426 ntAPPRIS P4 TSL 2 BASIC6.33□□□□□ -1.4
COL28A1Q2UY09 CLEC7A-205ENST00000353231 2446 ntAPPRIS P3 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL28A1Q2UY09 U3.52-201ENST00000384034 216 ntBASIC6.33□□□□□ -1.4
COL28A1Q2UY09 LINC00437-201ENST00000414161 791 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
COL28A1Q2UY09 AL358394.1-201ENST00000422807 535 ntTSL 2 BASIC6.33□□□□□ -1.4
COL28A1Q2UY09 AC006455.6-201ENST00000426192 893 ntBASIC6.33□□□□□ -1.4
COL28A1Q2UY09 NIPA2P1-201ENST00000426223 976 ntBASIC6.33□□□□□ -1.4
COL28A1Q2UY09 PNKDP1-201ENST00000435914 430 ntBASIC6.33□□□□□ -1.4
COL28A1Q2UY09 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC6.33□□□□□ -1.4
COL28A1Q2UY09 AL035420.1-202ENST00000450129 357 ntTSL 3 BASIC6.33□□□□□ -1.4
COL28A1Q2UY09 TVP23CP1-201ENST00000450317 639 ntBASIC6.33□□□□□ -1.4
COL28A1Q2UY09 OR52Y1P-201ENST00000452418 828 ntBASIC6.33□□□□□ -1.4
COL28A1Q2UY09 AL354953.1-201ENST00000457852 479 ntTSL 5 BASIC6.33□□□□□ -1.4
COL28A1Q2UY09 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC6.33□□□□□ -1.4
COL28A1Q2UY09 GLYCTK-AS1-202ENST00000472761 109 ntTSL 5 BASIC6.33□□□□□ -1.4
COL28A1Q2UY09 AC007998.1-201ENST00000474156 672 ntBASIC6.33□□□□□ -1.4
COL28A1Q2UY09 FAM107B-217ENST00000478076 790 ntAPPRIS P1 TSL 4 BASIC6.33□□□□□ -1.4
COL28A1Q2UY09 PSMA2P2-201ENST00000504319 686 ntBASIC6.33□□□□□ -1.4
COL28A1Q2UY09 AC145141.1-201ENST00000510180 567 ntTSL 4 BASIC6.33□□□□□ -1.4
COL28A1Q2UY09 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC6.33□□□□□ -1.4
COL28A1Q2UY09 SNORD46.2-201ENST00000516021 102 ntBASIC6.33□□□□□ -1.4
COL28A1Q2UY09 TPT1-AS1-206ENST00000519454 709 ntTSL 5 BASIC6.33□□□□□ -1.4
COL28A1Q2UY09 SNRPCP6-201ENST00000528310 210 ntBASIC6.33□□□□□ -1.4
COL28A1Q2UY09 AC130364.2-201ENST00000528639 604 ntBASIC6.33□□□□□ -1.4
COL28A1Q2UY09 AC027544.3-201ENST00000535082 757 ntBASIC6.33□□□□□ -1.4
COL28A1Q2UY09 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC6.33□□□□□ -1.4
COL28A1Q2UY09 NXPE2P1-201ENST00000543705 726 ntBASIC6.33□□□□□ -1.4
COL28A1Q2UY09 LINC00944-204ENST00000544499 366 ntTSL 5 BASIC6.33□□□□□ -1.4
COL28A1Q2UY09 LINC02310-201ENST00000556762 572 ntTSL 4 BASIC6.33□□□□□ -1.4
COL28A1Q2UY09 OR7E18P-201ENST00000592589 702 ntBASIC6.33□□□□□ -1.4
COL28A1Q2UY09 ZNF682-208ENST00000596019 552 ntTSL 5 BASIC6.33□□□□□ -1.4
COL28A1Q2UY09 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC6.33□□□□□ -1.4
COL28A1Q2UY09 AC092944.2-201ENST00000605443 889 ntBASIC6.33□□□□□ -1.4
COL28A1Q2UY09 PCA3_2.1-201ENST00000612507 409 ntBASIC6.33□□□□□ -1.4
COL28A1Q2UY09 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC6.33□□□□□ -1.4
COL28A1Q2UY09 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL28A1Q2UY09 AL355306.2-201ENST00000635570 1542 ntTSL 5 BASIC6.33□□□□□ -1.4
COL28A1Q2UY09 PCDH18-201ENST00000344876 5906 ntAPPRIS P3 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL28A1Q2UY09 KCNJ15-201ENST00000328656 8399 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL28A1Q2UY09 CATSPER2-202ENST00000381761 1758 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
COL28A1Q2UY09 AL391261.1-201ENST00000555712 1479 ntBASIC6.33□□□□□ -1.4
COL28A1Q2UY09 LINC02183-201ENST00000637822 1732 ntTSL 5 BASIC6.33□□□□□ -1.4
COL28A1Q2UY09 RRS1-AS1-201ENST00000499642 4366 ntTSL 2 BASIC6.33□□□□□ -1.4
COL28A1Q2UY09 CTNNA1P1-201ENST00000515849 2728 ntBASIC6.33□□□□□ -1.4
COL28A1Q2UY09 AC093225.1-201ENST00000506867 1408 ntBASIC6.33□□□□□ -1.4
COL28A1Q2UY09 FBXO43-201ENST00000428847 2886 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL28A1Q2UY09 MLIP-206ENST00000502396 3102 ntAPPRIS ALT2 TSL 2 BASIC6.32□□□□□ -1.4
COL28A1Q2UY09 LINC02153-202ENST00000522604 1644 ntTSL 2 BASIC6.32□□□□□ -1.4
COL28A1Q2UY09 AC100858.3-201ENST00000533516 1605 ntTSL 5 BASIC6.32□□□□□ -1.4
COL28A1Q2UY09 PPP2R3A-201ENST00000264977 6795 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL28A1Q2UY09 ZNF675-201ENST00000359788 2301 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL28A1Q2UY09 SSX7-201ENST00000298181 1311 ntAPPRIS P1 TSL 5 BASIC6.32□□□□□ -1.4
COL28A1Q2UY09 SELE-201ENST00000333360 3857 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL28A1Q2UY09 MAT2B-201ENST00000280969 2226 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL28A1Q2UY09 ADH1B-201ENST00000305046 4072 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL28A1Q2UY09 GPR155-206ENST00000614352 7321 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL28A1Q2UY09 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL28A1Q2UY09 MEPE-201ENST00000361056 1986 ntAPPRIS P3 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL28A1Q2UY09 RNA5SP242-201ENST00000364171 118 ntBASIC6.32□□□□□ -1.4
COL28A1Q2UY09 RN7SKP47-201ENST00000365347 328 ntBASIC6.32□□□□□ -1.4
COL28A1Q2UY09 AL121835.1-201ENST00000404250 354 ntBASIC6.32□□□□□ -1.4
COL28A1Q2UY09 FAM183A-205ENST00000410048 500 ntTSL 3 BASIC6.32□□□□□ -1.4
COL28A1Q2UY09 RN7SKP286-201ENST00000410894 299 ntBASIC6.32□□□□□ -1.4
COL28A1Q2UY09 ZNF92P1Y-201ENST00000415010 1191 ntBASIC6.32□□□□□ -1.4
COL28A1Q2UY09 FAM204CP-201ENST00000424489 642 ntBASIC6.32□□□□□ -1.4
COL28A1Q2UY09 AL445218.1-202ENST00000427695 845 ntTSL 3 BASIC6.32□□□□□ -1.4
COL28A1Q2UY09 MTND6P12-201ENST00000428247 522 ntBASIC6.32□□□□□ -1.4
COL28A1Q2UY09 DNAJC19P5-201ENST00000443295 316 ntBASIC6.32□□□□□ -1.4
COL28A1Q2UY09 AL161636.2-201ENST00000445179 927 ntBASIC6.32□□□□□ -1.4
COL28A1Q2UY09 MTCYBP14-201ENST00000457471 715 ntBASIC6.32□□□□□ -1.4
COL28A1Q2UY09 RPL36A-206ENST00000471855 399 ntTSL 3 BASIC6.32□□□□□ -1.4
COL28A1Q2UY09 ZNF286A-205ENST00000472486 827 ntTSL 2 BASIC6.32□□□□□ -1.4
COL28A1Q2UY09 AC090589.1-201ENST00000473109 362 ntBASIC6.32□□□□□ -1.4
COL28A1Q2UY09 SEC62-AS1-201ENST00000479626 346 ntTSL 5 BASIC6.32□□□□□ -1.4
COL28A1Q2UY09 RN7SL379P-201ENST00000479912 293 ntBASIC6.32□□□□□ -1.4
COL28A1Q2UY09 SCG5-207ENST00000497208 949 ntTSL 5 BASIC6.32□□□□□ -1.4
COL28A1Q2UY09 AC023794.2-201ENST00000504891 528 ntTSL 3 BASIC6.32□□□□□ -1.4
COL28A1Q2UY09 AC112184.1-201ENST00000505179 312 ntBASIC6.32□□□□□ -1.4
COL28A1Q2UY09 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC6.32□□□□□ -1.4
COL28A1Q2UY09 AC013724.1-201ENST00000511962 783 ntTSL 2 BASIC6.32□□□□□ -1.4
COL28A1Q2UY09 RN7SKP5-201ENST00000517045 272 ntBASIC6.32□□□□□ -1.4
COL28A1Q2UY09 IGKV2-19-201ENST00000518132 283 ntBASIC6.32□□□□□ -1.4
COL28A1Q2UY09 RPL36A-209ENST00000553110 429 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL28A1Q2UY09 AC007333.2-201ENST00000569998 559 ntTSL 4 BASIC6.32□□□□□ -1.4
COL28A1Q2UY09 MIR5095-201ENST00000578844 88 ntBASIC6.32□□□□□ -1.4
COL28A1Q2UY09 AC008752.2-201ENST00000591174 750 ntTSL 3 BASIC6.32□□□□□ -1.4
COL28A1Q2UY09 AC007255.2-201ENST00000604053 631 ntBASIC6.32□□□□□ -1.4
COL28A1Q2UY09 AL590032.1-201ENST00000604920 252 ntBASIC6.32□□□□□ -1.4
COL28A1Q2UY09 AC012467.1-201ENST00000607740 256 ntBASIC6.32□□□□□ -1.4
COL28A1Q2UY09 BACH1-IT2-202ENST00000608072 691 ntTSL 5 BASIC6.32□□□□□ -1.4
COL28A1Q2UY09 AC211433.2-201ENST00000608433 387 ntBASIC6.32□□□□□ -1.4
COL28A1Q2UY09 Z98949.1-213ENST00000608921 856 ntTSL 5 BASIC6.32□□□□□ -1.4
COL28A1Q2UY09 Z98949.1-217ENST00000609275 994 ntTSL 5 BASIC6.32□□□□□ -1.4
COL28A1Q2UY09 AC026951.2-201ENST00000613847 241 ntBASIC6.32□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 119.5 ms