Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AL445465.1-206ENST00000609544 528 ntTSL 5 BASIC6.52□□□□□ -1.37
COL4A4P53420 MIR6748-201ENST00000610433 71 ntBASIC6.52□□□□□ -1.37
COL4A4P53420 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC6.52□□□□□ -1.37
COL4A4P53420 AL445670.1-201ENST00000618889 801 ntBASIC6.52□□□□□ -1.37
COL4A4P53420 REG1CP-201ENST00000377435 1705 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
COL4A4P53420 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC6.51□□□□□ -1.37
COL4A4P53420 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC6.51□□□□□ -1.37
COL4A4P53420 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC6.51□□□□□ -1.37
COL4A4P53420 TRAF5-202ENST00000336184 3972 ntAPPRIS P1 TSL 5 BASIC6.51□□□□□ -1.37
COL4A4P53420 ALMS1-204ENST00000484298 12595 ntAPPRIS ALT2 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL4A4P53420 B4GALT4-207ENST00000467604 5794 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
COL4A4P53420 CU638689.4-201ENST00000623047 5990 ntTSL 5 BASIC6.51□□□□□ -1.37
COL4A4P53420 RGS4-203ENST00000367909 3200 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL4A4P53420 AC008467.1-201ENST00000512693 5471 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
COL4A4P53420 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
COL4A4P53420 MITF-203ENST00000328528 4680 ntTSL 5 BASIC6.51□□□□□ -1.37
COL4A4P53420 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL4A4P53420 RN7SKP115-201ENST00000363177 317 ntBASIC6.51□□□□□ -1.37
COL4A4P53420 RN7SKP160-201ENST00000363804 340 ntBASIC6.51□□□□□ -1.37
COL4A4P53420 OR2AT2P-201ENST00000413438 905 ntBASIC6.51□□□□□ -1.37
COL4A4P53420 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC6.51□□□□□ -1.37
COL4A4P53420 AC016027.4-201ENST00000450866 277 ntBASIC6.51□□□□□ -1.37
COL4A4P53420 PEX5L-AS2-201ENST00000462801 630 ntTSL 2 BASIC6.51□□□□□ -1.37
COL4A4P53420 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC6.51□□□□□ -1.37
COL4A4P53420 NDUFB5P1-201ENST00000508134 564 ntBASIC6.51□□□□□ -1.37
COL4A4P53420 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC6.51□□□□□ -1.37
COL4A4P53420 AC244502.2-201ENST00000543361 851 ntBASIC6.51□□□□□ -1.37
COL4A4P53420 GNG2-208ENST00000554875 430 ntTSL 5 BASIC6.51□□□□□ -1.37
COL4A4P53420 MIR1269B-201ENST00000580405 75 ntBASIC6.51□□□□□ -1.37
COL4A4P53420 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC6.51□□□□□ -1.37
COL4A4P53420 AL136359.1-201ENST00000625090 565 ntTSL 2 BASIC6.51□□□□□ -1.37
COL4A4P53420 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC6.51□□□□□ -1.37
COL4A4P53420 TLN2-211ENST00000636159 7441 ntTSL 5 BASIC6.51□□□□□ -1.37
COL4A4P53420 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC6.51□□□□□ -1.37
COL4A4P53420 SCAPER-202ENST00000324767 4707 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL4A4P53420 BRD7P6-201ENST00000431406 1860 ntBASIC6.51□□□□□ -1.37
COL4A4P53420 MLIP-206ENST00000502396 3102 ntAPPRIS ALT2 TSL 2 BASIC6.51□□□□□ -1.37
COL4A4P53420 AC119674.1-202ENST00000641333 1860 ntBASIC6.51□□□□□ -1.37
COL4A4P53420 AC127024.8-201ENST00000623719 2094 ntBASIC6.51□□□□□ -1.37
COL4A4P53420 SEPT14-201ENST00000388975 3785 ntAPPRIS P1 TSL 2 BASIC6.5□□□□□ -1.37
COL4A4P53420 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC6.5□□□□□ -1.37
COL4A4P53420 LGSN-204ENST00000622415 1612 ntTSL 2 BASIC6.5□□□□□ -1.37
COL4A4P53420 AL353763.1-201ENST00000624467 1628 ntBASIC6.5□□□□□ -1.37
COL4A4P53420 B3GALT1-201ENST00000392690 5094 ntAPPRIS P1 BASIC6.5□□□□□ -1.37
COL4A4P53420 FASTKD2-203ENST00000403094 2344 ntAPPRIS P1 TSL 5 BASIC6.5□□□□□ -1.37
COL4A4P53420 AL136531.3-201ENST00000624378 3658 ntBASIC6.5□□□□□ -1.37
COL4A4P53420 AC104162.1-201ENST00000430831 2382 ntBASIC6.5□□□□□ -1.37
COL4A4P53420 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL4A4P53420 SNORA70-201ENST00000384436 135 ntBASIC6.5□□□□□ -1.37
COL4A4P53420 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC6.5□□□□□ -1.37
COL4A4P53420 AL122020.1-201ENST00000472287 459 ntBASIC6.5□□□□□ -1.37
COL4A4P53420 AC096736.3-201ENST00000510753 993 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
COL4A4P53420 AC097537.1-201ENST00000514864 1213 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
COL4A4P53420 IGLV2-28-201ENST00000520681 304 ntBASIC6.5□□□□□ -1.37
COL4A4P53420 KLRD1-209ENST00000543420 802 ntTSL 5 BASIC6.5□□□□□ -1.37
COL4A4P53420 AC091193.1-201ENST00000604640 448 ntBASIC6.5□□□□□ -1.37
COL4A4P53420 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC6.5□□□□□ -1.37
COL4A4P53420 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC6.5□□□□□ -1.37
COL4A4P53420 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL4A4P53420 ROBO2-201ENST00000332191 5437 ntAPPRIS ALT2 TSL 5 BASIC6.5□□□□□ -1.37
COL4A4P53420 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC6.5□□□□□ -1.37
COL4A4P53420 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL4A4P53420 PTPRG-AS1-204ENST00000474795 2661 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
COL4A4P53420 PLD5-203ENST00000427495 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL4A4P53420 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL4A4P53420 AC105749.1-201ENST00000631338 2008 ntBASIC6.49□□□□□ -1.37
COL4A4P53420 DNM1L-201ENST00000266481 3101 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL4A4P53420 NAT1-209ENST00000541942 1948 ntAPPRIS P1 TSL 3 BASIC6.49□□□□□ -1.37
COL4A4P53420 RNA5SP350-201ENST00000363298 111 ntBASIC6.49□□□□□ -1.37
COL4A4P53420 TMBIM4-203ENST00000398033 844 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
COL4A4P53420 HMGB1P20-201ENST00000402555 677 ntBASIC6.49□□□□□ -1.37
COL4A4P53420 RNA5SP251-201ENST00000410614 137 ntBASIC6.49□□□□□ -1.37
COL4A4P53420 AC245096.1-201ENST00000413104 546 ntBASIC6.49□□□□□ -1.37
COL4A4P53420 SLC8A1-AS1-202ENST00000417875 344 ntTSL 2 BASIC6.49□□□□□ -1.37
COL4A4P53420 AC006455.6-201ENST00000426192 893 ntBASIC6.49□□□□□ -1.37
COL4A4P53420 LINC00390-201ENST00000432331 340 ntTSL 5 BASIC6.49□□□□□ -1.37
COL4A4P53420 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC6.49□□□□□ -1.37
COL4A4P53420 MORF4-201ENST00000447135 971 ntBASIC6.49□□□□□ -1.37
COL4A4P53420 AL445238.1-201ENST00000450029 712 ntTSL 2 BASIC6.49□□□□□ -1.37
COL4A4P53420 MORF4L1P4-201ENST00000450245 976 ntBASIC6.49□□□□□ -1.37
COL4A4P53420 RN7SL72P-201ENST00000460697 269 ntBASIC6.49□□□□□ -1.37
COL4A4P53420 AL035690.1-201ENST00000490892 383 ntBASIC6.49□□□□□ -1.37
COL4A4P53420 NDUFA5P12-201ENST00000503796 343 ntBASIC6.49□□□□□ -1.37
COL4A4P53420 AC105420.1-201ENST00000504389 582 ntBASIC6.49□□□□□ -1.37
COL4A4P53420 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
COL4A4P53420 OR8G3P-201ENST00000533406 921 ntBASIC6.49□□□□□ -1.37
COL4A4P53420 APPL2-203ENST00000546731 684 ntTSL 2 BASIC6.49□□□□□ -1.37
COL4A4P53420 HAUS8P1-201ENST00000549005 542 ntBASIC6.49□□□□□ -1.37
COL4A4P53420 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC6.49□□□□□ -1.37
COL4A4P53420 AC091078.2-201ENST00000557145 559 ntBASIC6.49□□□□□ -1.37
COL4A4P53420 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC6.49□□□□□ -1.37
COL4A4P53420 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC6.49□□□□□ -1.37
COL4A4P53420 AC116651.1-201ENST00000609724 556 ntBASIC6.49□□□□□ -1.37
COL4A4P53420 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL4A4P53420 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC6.49□□□□□ -1.37
COL4A4P53420 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC6.49□□□□□ -1.37
COL4A4P53420 CLASP1-202ENST00000397587 7915 ntTSL 5 BASIC6.49□□□□□ -1.37
COL4A4P53420 WDR95P-201ENST00000425638 1542 ntBASIC6.49□□□□□ -1.37
COL4A4P53420 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL4A4P53420 ZNF610-202ENST00000327920 1855 ntAPPRIS P3 TSL 2 BASIC6.49□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 136.3 ms